Experiment set21IT032 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS24975		+3.7	3.9	RNA polymerase sigma24 factor
BPHYT_RS08380		+3.6	12.0	multidrug MFS transporter
BPHYT_RS12060		+3.0	2.4	hypothetical protein
BPHYT_RS16665		+2.8	1.4	peroxiredoxin
BPHYT_RS26560		+2.5	4.6	murein hydrolase transporter LrgA
BPHYT_RS11755		+2.3	2.5	spermidine/putrescine ABC transporter substrate-binding protein
BPHYT_RS11395		+2.3	1.7	hypothetical protein
BPHYT_RS26380		+2.1	4.9	cobalamin biosynthesis protein CobT
BPHYT_RS33035		+2.0	2.9	murein transglycosylase
BPHYT_RS23865		+1.9	2.8	2OG-Fe(II) oxygenase
BPHYT_RS01240		+1.9	1.6	hypothetical protein
BPHYT_RS31285		+1.8	5.9	universal stress protein A
BPHYT_RS17165		+1.7	5.1	cell division protein ZapD
BPHYT_RS20380		+1.7	3.5	LysR family transcriptional regulator
BPHYT_RS23495		+1.6	1.6	thioredoxin reductase
BPHYT_RS09155		+1.6	6.7	3-ketoacyl-ACP reductase
BPHYT_RS17835		+1.6	3.9	protein tyrosine phosphatase
BPHYT_RS17890		+1.6	2.1	shikimate kinase
BPHYT_RS18835		+1.6	2.8	flagellar biosynthesis protein FliR
BPHYT_RS26470		+1.6	2.2	MFS transporter
BPHYT_RS30830		+1.5	1.2	MFS transporter
BPHYT_RS34155		+1.5	2.7	3-hydroxybutyryl-CoA dehydrogenase
BPHYT_RS23610		+1.5	1.4	alpha/beta hydrolase
BPHYT_RS01180		+1.5	1.3	AraC family transcriptional regulator
BPHYT_RS22340		+1.5	1.1	methionine sulfoxide reductase A
BPHYT_RS31575		+1.4	2.0	hypothetical protein
BPHYT_RS08185		+1.4	3.3	pilus assembly protein CpaF
BPHYT_RS21905		+1.4	1.5	IclR family transcriptional regulator
BPHYT_RS25345		+1.4	1.8	arylsulfatase
BPHYT_RS25780		+1.4	0.9	DeoR faimly transcriptional regulator
BPHYT_RS11385		+1.4	1.4	lipid A biosynthesis lauroyl acyltransferase
BPHYT_RS14550		+1.3	1.4	tRNA-Asn
BPHYT_RS23950		+1.3	1.2	DMT family permease
BPHYT_RS30775		+1.3	0.8	gluconate 2-dehydrogenase
BPHYT_RS09650		+1.3	1.8	hypothetical protein
BPHYT_RS08210		+1.3	2.6	membrane protein
BPHYT_RS22100		+1.3	3.1	ribonuclease BN
BPHYT_RS10850		+1.3	1.5	LysR family transcriptional regulator
BPHYT_RS33260		+1.2	3.0	hypothetical protein
BPHYT_RS09745		+1.2	2.8	glucose-6-phosphate isomerase
BPHYT_RS29385		+1.2	1.2	acetyl-CoA acetyltransferase
BPHYT_RS35610		+1.2	1.4	diguanylate cyclase
BPHYT_RS03015		+1.2	1.1	aldolase
BPHYT_RS33555		+1.2	1.3	30S ribosomal protein S21
BPHYT_RS13430		+1.2	1.5	radical SAM protein
BPHYT_RS20845		+1.2	1.9	peroxidase
BPHYT_RS32880		+1.2	1.2	alanine acetyltransferase
BPHYT_RS08405		+1.2	1.4	hypothetical protein
BPHYT_RS26160		+1.2	1.7	membrane protein
BPHYT_RS16210		+1.2	3.3	peptidase
BPHYT_RS22875		+1.1	2.6	hypothetical protein
BPHYT_RS35770		+1.1	1.1	glyoxalase
BPHYT_RS23855		+1.1	3.4	hypothetical protein
BPHYT_RS34490		+1.1	1.1	hypothetical protein
BPHYT_RS03150		+1.1	7.3	Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data)
BPHYT_RS33990		+1.1	1.0	ATPase
BPHYT_RS14390		+1.1	2.0	peptidase
BPHYT_RS07350		+1.1	1.4	ABC transporter ATP-binding protein
BPHYT_RS20515		+1.1	1.1	alpha/beta hydrolase
BPHYT_RS08750		+1.1	1.6	LysR family transcriptional regulator
BPHYT_RS10175		+1.1	2.2	membrane protein
BPHYT_RS09185		+1.1	1.1	hypothetical protein
BPHYT_RS05530		+1.1	1.4	hypothetical protein
BPHYT_RS20725		+1.1	1.4	histidine kinase
BPHYT_RS35655		+1.1	2.3	hypothetical protein
BPHYT_RS28535		+1.1	1.1	response regulator receiver
BPHYT_RS28995		+1.1	1.4	histidine kinase
BPHYT_RS01210		+1.1	1.7	hypothetical protein
BPHYT_RS10695		+1.1	1.5	aromatic-ring-hydroxylating dioxygenase subunit beta
BPHYT_RS20590		+1.1	1.0	methionine sulfoxide reductase A
BPHYT_RS36215		+1.1	4.4	hypothetical protein
BPHYT_RS16445		+1.1	1.2	RNA helicase
BPHYT_RS16500		+1.1	2.6	MIP family channel protein
BPHYT_RS11500		+1.1	1.6	ABC transporter permease
BPHYT_RS23445		+1.0	1.6	hexuronate transporter
BPHYT_RS25000		+1.0	1.8	MFS transporter
BPHYT_RS05620		+1.0	1.1	CsbD family protein
BPHYT_RS30230		+1.0	2.0	LysR family transcriptional regulator
BPHYT_RS29250		+1.0	2.3	dihydrodipicolinate synthase
BPHYT_RS35500		+1.0	1.3	major facilitator transporter
BPHYT_RS30255		+1.0	0.9	hypothetical protein
BPHYT_RS10435		+1.0	3.2	ThiJ/PfpI domain-containing protein
BPHYT_RS21620		+1.0	1.5	GCN5 family acetyltransferase
BPHYT_RS32920		+1.0	1.1	alpha/beta hydrolase
BPHYT_RS00420		+1.0	1.8	LysR family transcriptional regulator
BPHYT_RS02425		+1.0	2.0	hypothetical protein
BPHYT_RS31060		+1.0	0.7	capsular polysaccharide biosynthesis protein
BPHYT_RS27100		+1.0	2.8	RNase II stability modulator
BPHYT_RS27230		+1.0	1.7	hypothetical protein
BPHYT_RS32395		+1.0	1.0	hypothetical protein
BPHYT_RS25065		+1.0	1.3	glycine/betaine ABC transporter ATPase
BPHYT_RS10260		+1.0	1.5	hypothetical protein
BPHYT_RS10900		+1.0	2.0	histidine kinase
BPHYT_RS13420		+1.0	2.6	hypothetical protein
BPHYT_RS01985		+1.0	1.0	hypothetical protein
BPHYT_RS20850		+1.0	1.9	multidrug DMT transporter permease
BPHYT_RS09750		+1.0	1.5	glycosyl transferase
BPHYT_RS02135		+1.0	1.0	glyoxylate reductase
BPHYT_RS27715		+1.0	1.9	UspA domain-containing protein
BPHYT_RS31395		+1.0	1.4	thiamine pyrophosphate-binding protein
BPHYT_RS33465		+1.0	1.3	D-alanyl-D-alanine carboxypeptidase
BPHYT_RS13315		+1.0	1.9	dihydropyrimidine dehydrogenase subunit A
BPHYT_RS07900		+1.0	1.6	hypothetical protein
BPHYT_RS30795		+1.0	1.1	short-chain dehydrogenase
BPHYT_RS10650		+1.0	1.2	membrane protein
BPHYT_RS10590		+1.0	2.8	hypothetical protein
BPHYT_RS04430		+0.9	1.5	amino acid ABC transporter ATPase
BPHYT_RS05435		+0.9	1.5	ABC transporter substrate-binding protein
BPHYT_RS24010		+0.9	1.7	L-histidine ABC transporter, permease component 2 (from data)
BPHYT_RS22325		+0.9	2.7	histidine kinase
BPHYT_RS22250		+0.9	1.6	D-amino acid dehydrogenase
BPHYT_RS11075		+0.9	1.7	membrane protein
BPHYT_RS21725		+0.9	0.9	taurine ABC transporter substrate-binding protein
BPHYT_RS02070		+0.9	2.9	hypothetical protein
BPHYT_RS10040		+0.9	0.8	hypothetical protein
BPHYT_RS03100		+0.9	1.1	peptidase
BPHYT_RS31065		+0.9	3.3	polysaccharide biosynthesis protein
BPHYT_RS10750		+0.9	1.1	LysR family transcriptional regulator
BPHYT_RS07690		+0.9	0.8	AraC family transcriptional regulator
BPHYT_RS16590		+0.9	2.8	Fis family transcriptional regulator
BPHYT_RS28265		+0.9	2.6	hypothetical protein
BPHYT_RS09810		+0.9	3.6	hypothetical protein
BPHYT_RS01395		+0.9	2.7	tRNA-Arg
BPHYT_RS24585		+0.9	1.1	NUDIX hydrolase
BPHYT_RS17400		+0.9	5.5	anthranilate phosphoribosyltransferase
BPHYT_RS32045		+0.9	1.4	RNA helicase
BPHYT_RS09465		+0.9	1.4	transcriptional regulator
BPHYT_RS26190		+0.9	1.0	lysine transporter LysE
BPHYT_RS21855		+0.9	1.5	hypothetical protein
BPHYT_RS25220		+0.9	1.2	ferredoxin oxidoreductase
BPHYT_RS22710		+0.9	1.0	XRE family transcriptional regulator
BPHYT_RS23215		+0.9	2.6	transcriptional regulator
BPHYT_RS30785		+0.9	1.8	alcohol dehydrogenase
BPHYT_RS05235		+0.9	1.1	bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase
BPHYT_RS00795		+0.9	2.7	conjugal transfer protein TraJ
BPHYT_RS33030		+0.9	0.7	hypothetical protein
BPHYT_RS10185		+0.9	1.9	MarR family transcriptional regulator
BPHYT_RS32115		+0.9	1.2	hypothetical protein
BPHYT_RS23460		+0.9	0.6	AraC family transcriptional regulator
BPHYT_RS28350		+0.9	1.6	fatty acid desaturase
BPHYT_RS26355		+0.9	1.4	hypothetical protein
BPHYT_RS15190		+0.9	0.9	acyl carrier protein
BPHYT_RS13705		+0.8	2.2	chorismate synthase
BPHYT_RS29805		+0.8	1.7	lysine transporter LysE
BPHYT_RS05940		+0.8	0.7	membrane protein
BPHYT_RS08400		+0.8	2.4	hypothetical protein
BPHYT_RS05190		+0.8	1.8	ADP-heptose--LPS heptosyltransferase
BPHYT_RS30930		+0.8	2.0	PAS/PAC sensor signal transduction histidine kinase
BPHYT_RS03920		+0.8	1.4	lysine transporter LysE
BPHYT_RS12550		+0.8	0.8	GTP-binding protein HflX
BPHYT_RS17590		+0.8	2.2	hypothetical protein
BPHYT_RS28190		+0.8	1.7	porin
BPHYT_RS31890		+0.8	1.0	transposase
BPHYT_RS28145		+0.8	1.7	diguanylate cyclase
BPHYT_RS00145		+0.8	1.7	hypothetical protein
BPHYT_RS15625		+0.8	1.7	hypothetical protein
BPHYT_RS25285		+0.8	1.7	AraC family transcriptional regulator
BPHYT_RS33880		+0.8	2.0	N-(5'-phosphoribosyl)anthranilate isomerase
BPHYT_RS01795		+0.8	4.6	histidine kinase
BPHYT_RS12650		+0.8	1.5	hypothetical protein
BPHYT_RS13490		+0.8	1.8	hypothetical protein
BPHYT_RS22030		+0.8	2.0	peptide ABC transporter ATP-binding protein
BPHYT_RS28790		+0.8	1.7	membrane protein
BPHYT_RS07265		+0.8	2.0	3-hydroxyanthranilate 3,4-dioxygenase
BPHYT_RS34160		+0.8	2.2	hypothetical protein
BPHYT_RS23210		+0.8	1.2	MFS transporter
BPHYT_RS22015		+0.8	3.1	spermidine/putrescine ABC transporter ATPase
BPHYT_RS33600		+0.8	2.5	carboxymethylenebutenolidase
BPHYT_RS17030		+0.8	1.0	lipid hydroperoxide peroxidase
BPHYT_RS05470		+0.8	2.3	excinuclease ABC subunit C
BPHYT_RS15775		+0.8	1.6	peptide ABC transporter permease
BPHYT_RS21130		+0.8	1.1	F420-dependent oxidoreductase
BPHYT_RS06510		+0.8	1.6	DeoR faimly transcriptional regulator
BPHYT_RS03830		+0.8	1.3	hypothetical protein
BPHYT_RS05040		+0.8	2.1	sugar ABC transporter ATPase
BPHYT_RS09730		+0.8	2.4	exopolysaccharide biosynthesis protein
BPHYT_RS02760		+0.8	0.8	cytochrome BD oxidase subunit II
BPHYT_RS14905		+0.8	2.2	Aromatic-amino-acid transaminase (EC 2.6.1.57) (from data)
BPHYT_RS23535		+0.8	2.0	ABC transporter substrate-binding protein
BPHYT_RS27330		+0.8	0.9	hypothetical protein
BPHYT_RS15455		+0.8	2.5	hypothetical protein
BPHYT_RS32640		+0.8	4.2	2-aminoadipate aminotransferase
BPHYT_RS16065		+0.8	0.7	LacI family transcriptional regulator
BPHYT_RS13915		+0.8	1.6	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase
BPHYT_RS07515		+0.8	0.9	photosystem reaction center subunit H
BPHYT_RS10465		+0.8	2.4	hypothetical protein
BPHYT_RS25325		+0.8	1.7	SARP family transcriptional regulator
BPHYT_RS27115		+0.8	1.5	peptidase M20
BPHYT_RS18365		+0.8	0.8	oxidoreductase
BPHYT_RS21060		+0.8	1.6	hypothetical protein
BPHYT_RS36000		+0.8	1.6	hypothetical protein
BPHYT_RS32525		+0.8	0.9	hypothetical protein
BPHYT_RS15755		+0.8	2.2	mannose-6-phosphate isomerase
BPHYT_RS28075		+0.8	0.8	cytochrome B561
BPHYT_RS21080		+0.8	2.3	(2Fe-2S)-binding protein
BPHYT_RS02205		+0.8	2.9	hypothetical protein
BPHYT_RS01235		+0.8	1.2	hypothetical protein
BPHYT_RS21215		+0.8	3.0	Crp/Fnr family transcriptional regulator
BPHYT_RS33965		+0.8	1.3	methylcitrate synthase
BPHYT_RS31250		+0.8	2.2	ABC transporter

Specific Phenotypes

For 2 genes in this experiment