Experiment set21IT027 for Burkholderia phytofirmans PsJN

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Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS17890 +2.9 3.6 shikimate kinase compare
BPHYT_RS20270 +2.9 4.6 L-ornithine 5-monooxygenase compare
BPHYT_RS25780 +2.4 1.6 DeoR faimly transcriptional regulator compare
BPHYT_RS33875 +2.3 9.4 tryptophan synthase subunit alpha compare
BPHYT_RS14915 +2.3 9.4 phosphoserine aminotransferase compare
BPHYT_RS21215 +2.3 7.6 Crp/Fnr family transcriptional regulator compare
BPHYT_RS16495 +2.3 14.0 glycerol kinase compare
BPHYT_RS03150 +2.2 14.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS16490 +2.2 12.1 glycerol-3-phosphate dehydrogenase compare
BPHYT_RS14910 +2.1 11.2 chorismate mutase compare
BPHYT_RS17405 +2.1 2.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS21025 +2.1 2.7 cation-binding protein compare
BPHYT_RS05225 +2.1 12.2 phosphoenolpyruvate carboxylase compare
BPHYT_RS16500 +2.0 5.9 MIP family channel protein compare
BPHYT_RS17390 +2.0 14.2 anthranilate synthase subunit I compare
BPHYT_RS03375 +2.0 3.4 NAD(P) transhydrogenase compare
BPHYT_RS14900 +2.0 4.9 prephenate dehydrogenase compare
BPHYT_RS17400 +2.0 7.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS02880 +1.9 2.3 ATP-dependent protease compare
BPHYT_RS20260 +1.9 14.1 cytochrome C551 peroxidase compare
BPHYT_RS20265 +1.9 11.7 amino acid adenylation protein compare
BPHYT_RS33880 +1.9 8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS13705 +1.9 6.7 chorismate synthase compare
BPHYT_RS02770 +1.9 2.1 membrane protein compare
BPHYT_RS12295 +1.9 4.2 LysR family transcriptional regulator compare
BPHYT_RS20215 +1.9 4.7 RNA polymerase sigma 70 compare
BPHYT_RS17395 +1.8 4.1 anthranilate synthase subunit II compare
BPHYT_RS13540 +1.8 9.2 LysR family transcriptional regulator compare
BPHYT_RS04875 +1.8 3.6 alpha-ribazole phosphatase compare
BPHYT_RS21765 +1.8 3.4 IclR family transcriptional regulator compare
BPHYT_RS20280 +1.8 3.4 hypothetical protein compare
BPHYT_RS14070 +1.8 1.9 hypothetical protein compare
BPHYT_RS13470 +1.8 1.5 arylsulfate sulfotransferase compare
BPHYT_RS29540 +1.8 2.1 aldolase compare
BPHYT_RS17165 +1.7 4.5 cell division protein ZapD compare
BPHYT_RS12060 +1.7 2.8 hypothetical protein compare
BPHYT_RS30915 +1.7 3.3 hypothetical protein compare
BPHYT_RS02710 +1.6 1.9 hypothetical protein compare
BPHYT_RS21625 +1.6 1.9 LysR family transcriptional regulator compare
BPHYT_RS25080 +1.6 2.7 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS03470 +1.6 5.5 LysR family transcriptional regulator compare
BPHYT_RS33870 +1.6 6.3 DNA methylase N-4 compare
BPHYT_RS02760 +1.6 1.3 cytochrome BD oxidase subunit II compare
BPHYT_RS02755 +1.6 1.8 cyd operon protein YbgT compare
BPHYT_RS30990 +1.5 2.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS17680 +1.5 5.8 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06045 +1.5 7.7 transaldolase compare
BPHYT_RS35945 +1.5 1.4 response regulator receiver compare
BPHYT_RS25970 +1.5 1.4 urea amidolyase compare
BPHYT_RS17675 +1.5 3.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS29100 +1.5 2.3 ketosteroid isomerase compare
BPHYT_RS04595 +1.5 2.2 cytoplasmic protein compare
BPHYT_RS29835 +1.4 3.0 glycosyltransferase compare
BPHYT_RS28000 +1.4 2.3 permease compare
BPHYT_RS17885 +1.4 5.3 3-dehydroquinate synthase compare
BPHYT_RS14895 +1.4 3.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS30795 +1.4 1.5 short-chain dehydrogenase compare
BPHYT_RS06930 +1.4 2.9 hypothetical protein compare
BPHYT_RS26965 +1.4 1.6 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS11795 +1.4 1.5 membrane protein compare
BPHYT_RS10065 +1.4 1.5 cytochrome C oxidase subunit I compare
BPHYT_RS33865 +1.4 5.3 tryptophan synthase alpha chain compare
BPHYT_RS25470 +1.3 1.8 alkylhydroperoxidase compare
BPHYT_RS02070 +1.3 1.2 hypothetical protein compare
BPHYT_RS30890 +1.3 1.9 hypothetical protein compare
BPHYT_RS01985 +1.3 1.1 hypothetical protein compare
BPHYT_RS17685 +1.3 5.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS14150 +1.3 3.2 transposase compare
BPHYT_RS16975 +1.3 3.5 shikimate 5-dehydrogenase compare
BPHYT_RS08525 +1.3 1.3 SAM-dependent methyltransferase compare
BPHYT_RS28680 +1.3 3.1 porin compare
BPHYT_RS10345 +1.3 0.9 flagellar motor protein MotB compare
BPHYT_RS26775 +1.2 1.5 chemotaxis protein CheB compare
BPHYT_RS17700 +1.2 4.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS29695 +1.2 2.3 hypothetical protein compare
BPHYT_RS17670 +1.2 3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17590 +1.2 2.4 hypothetical protein compare
BPHYT_RS21075 +1.2 2.9 (2Fe-2S)-binding protein compare
BPHYT_RS25560 +1.2 1.9 RNA polymerase sigma factor compare
BPHYT_RS25845 +1.2 1.1 RND transporter MFP subunit compare
BPHYT_RS03830 +1.2 1.7 hypothetical protein compare
BPHYT_RS01795 +1.2 6.6 histidine kinase compare
BPHYT_RS30085 +1.2 1.0 hypothetical protein compare
BPHYT_RS13915 +1.2 1.4 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase compare
BPHYT_RS26515 +1.2 1.9 HAD family hydrolase compare
BPHYT_RS35230 +1.2 1.5 type 11 methyltransferase compare
BPHYT_RS28955 +1.2 2.0 hypothetical protein compare
BPHYT_RS06975 +1.2 1.1 glutamate racemase compare
BPHYT_RS25980 +1.2 1.0 urea carboxylase compare
BPHYT_RS09490 +1.1 3.8 arylesterase compare
BPHYT_RS09280 +1.1 1.2 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS28965 +1.1 0.9 hypothetical protein compare
BPHYT_RS09765 +1.1 1.8 G-D-S-L family lipolytic protein compare
BPHYT_RS36400 +1.1 1.4 hypothetical protein compare
BPHYT_RS25165 +1.1 1.9 HTH-type transcriptional regulator BetI compare
BPHYT_RS14340 +1.1 5.4 Fis family transcriptional regulator compare
BPHYT_RS14500 +1.1 1.3 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS36245 +1.1 2.5 hypothetical protein compare
BPHYT_RS33905 +1.1 1.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS05570 +1.1 2.0 hypothetical protein compare
BPHYT_RS05905 +1.1 0.9 hypothetical protein compare
BPHYT_RS03100 +1.1 1.4 peptidase compare
BPHYT_RS20275 +1.1 4.8 TonB-denpendent receptor compare
BPHYT_RS31040 +1.1 2.8 sugar transporter compare
BPHYT_RS05085 +1.1 3.0 LysR family transcriptional regulator compare
BPHYT_RS10115 +1.1 1.8 hypothetical protein compare
BPHYT_RS28920 +1.1 1.4 cellulose synthase compare
BPHYT_RS13105 +1.1 1.4 LacI family transcription regulator compare
BPHYT_RS32120 +1.0 1.6 hypothetical protein compare
BPHYT_RS23225 +1.0 1.4 hypothetical protein compare
BPHYT_RS22030 +1.0 2.7 peptide ABC transporter ATP-binding protein compare
BPHYT_RS30635 +1.0 2.0 D-aminopeptidase compare
BPHYT_RS28255 +1.0 1.5 hypothetical protein compare
BPHYT_RS16735 +1.0 4.2 phosphogluconate dehydratase compare
BPHYT_RS27330 +1.0 1.1 hypothetical protein compare
BPHYT_RS17505 +1.0 2.4 transcriptional regulator compare
BPHYT_RS14880 +1.0 1.8 integration host factor subunit beta compare
BPHYT_RS34400 +1.0 2.2 hypothetical protein compare
BPHYT_RS01950 +1.0 3.0 phosphoheptose isomerase compare
BPHYT_RS10850 +1.0 1.2 LysR family transcriptional regulator compare
BPHYT_RS31320 +1.0 1.6 hypothetical protein compare
BPHYT_RS36570 +1.0 1.5 histone compare
BPHYT_RS15715 +1.0 2.7 ATP-dependent Clp protease adapter protein ClpS compare
BPHYT_RS02470 +1.0 2.0 phosphoserine phosphatase compare
BPHYT_RS00590 +1.0 2.1 hypothetical protein compare
BPHYT_RS24045 +1.0 1.8 amino acid ABC transporter compare
BPHYT_RS15490 +1.0 3.2 coproporphyrinogen III oxidase compare
BPHYT_RS25500 +1.0 1.1 hypothetical protein compare
BPHYT_RS34700 +1.0 1.5 arsenate reductase compare
BPHYT_RS33805 +1.0 0.9 hypothetical protein compare
BPHYT_RS05515 +1.0 1.9 hypothetical protein compare
BPHYT_RS03185 +1.0 3.6 thiopurine S-methyltransferase compare
BPHYT_RS02940 +1.0 4.8 adenine phosphoribosyltransferase compare
BPHYT_RS25875 +1.0 0.9 type III secretion protein compare
BPHYT_RS20520 +0.9 1.2 transcriptional regulator compare
BPHYT_RS08595 +0.9 1.8 multidrug transporter compare
BPHYT_RS02995 +0.9 1.2 2-methylcitrate dehydratase compare
BPHYT_RS03920 +0.9 2.7 lysine transporter LysE compare
BPHYT_RS07310 +0.9 2.2 glyoxalase compare
BPHYT_RS33345 +0.9 2.9 hypothetical protein compare
BPHYT_RS04430 +0.9 1.3 amino acid ABC transporter ATPase compare
BPHYT_RS19890 +0.9 1.0 hypothetical protein compare
BPHYT_RS10875 +0.9 2.2 transporter compare
BPHYT_RS20180 +0.9 1.2 sugar ABC transporter substrate-binding protein compare
BPHYT_RS26910 +0.9 1.5 hypothetical protein compare
BPHYT_RS13555 +0.9 1.7 acyl-CoA dehydrogenase compare
BPHYT_RS23430 +0.9 0.9 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS04255 +0.9 1.8 diadenosine tetraphosphatase compare
BPHYT_RS10040 +0.9 0.7 hypothetical protein compare
BPHYT_RS27270 +0.9 1.5 photosystem reaction center subunit H compare
BPHYT_RS10690 +0.9 1.2 Rieske (2Fe-2S) protein compare
BPHYT_RS02765 +0.9 0.9 cytochrome BD oxidase subunit I compare
BPHYT_RS11425 +0.9 1.2 chemotaxis protein compare
BPHYT_RS24140 +0.9 1.8 2,5-dioxovalerate dehydrogenase compare
BPHYT_RS26890 +0.9 2.5 LysR family transcriptional regulator compare
BPHYT_RS01725 +0.9 2.7 hypothetical protein compare
BPHYT_RS26160 +0.9 1.5 membrane protein compare
BPHYT_RS26715 +0.9 2.1 GTP-binding protein compare
BPHYT_RS19490 +0.9 2.9 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS12510 +0.9 0.6 RNA-binding protein compare
BPHYT_RS26675 +0.9 1.3 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS33850 +0.9 1.1 sporulation protein compare
BPHYT_RS06485 +0.9 1.8 globin compare
BPHYT_RS10255 +0.9 1.6 LysR family transcriptional regulator compare
BPHYT_RS21235 +0.9 1.2 hypothetical protein compare
BPHYT_RS32605 +0.8 1.4 hypothetical protein compare
BPHYT_RS28535 +0.8 0.8 response regulator receiver compare
BPHYT_RS19020 +0.8 4.2 transcriptional regulator compare
BPHYT_RS09265 +0.8 1.5 chemotaxis protein CheY compare
BPHYT_RS23395 +0.8 1.1 glycosyl transferase compare
BPHYT_RS26200 +0.8 1.6 acetate kinase compare
BPHYT_RS14595 +0.8 1.5 RNA-binding protein compare
BPHYT_RS01790 +0.8 5.2 LuxR family transcriptional regulator compare
BPHYT_RS00690 +0.8 0.7 transcriptional regulator compare
BPHYT_RS10560 +0.8 2.6 hypothetical protein compare
BPHYT_RS21870 +0.8 1.4 hypothetical protein compare
BPHYT_RS26385 +0.8 1.4 glutamine amidotransferase compare
BPHYT_RS36060 +0.8 1.2 hypothetical protein compare
BPHYT_RS22810 +0.8 1.4 biopolymer transporter ExbB compare
BPHYT_RS10940 +0.8 1.3 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase compare
BPHYT_RS19935 +0.8 1.2 protein serine/threonine phosphatase compare
BPHYT_RS32730 +0.8 0.9 histidine phosphatase compare
BPHYT_RS17855 +0.8 5.5 glutamate synthase compare
BPHYT_RS13505 +0.8 1.7 2,4-dienoyl-CoA reductase compare
BPHYT_RS13835 +0.8 0.7 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS17185 +0.8 3.1 N-acetylglutamate synthase compare
BPHYT_RS01475 +0.8 3.1 16S rRNA methyltransferase compare
BPHYT_RS22135 +0.8 1.2 3-ketoacyl-ACP reductase compare
BPHYT_RS36150 +0.8 1.8 hypothetical protein compare
BPHYT_RS13920 +0.8 2.5 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
BPHYT_RS13320 +0.8 0.8 allantoate amidohydrolase compare
BPHYT_RS02120 +0.8 1.9 hypothetical protein compare
BPHYT_RS09155 +0.8 2.1 3-ketoacyl-ACP reductase compare
BPHYT_RS11215 +0.8 3.4 ribose ABC transporter ATPase compare
BPHYT_RS10400 +0.8 0.6 taurine ABC transporter permease compare
BPHYT_RS31305 +0.8 1.0 alcohol dehydrogenase compare
BPHYT_RS17030 +0.8 0.9 lipid hydroperoxide peroxidase compare
BPHYT_RS12815 +0.8 3.0 IclR family transcriptional regulator compare
BPHYT_RS05525 +0.8 1.2 sensor histidine kinase compare
BPHYT_RS12500 +0.8 2.0 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment