Experiment set21IT027 for Burkholderia phytofirmans PsJN

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Group: agar plate interaction
Media: LB
Culturing: BFirm_ML3a, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 1-Feb-22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 7 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Glycerol and Glycerol-3-phosphate Uptake and Utilization	3
Glycerolipid and Glycerophospholipid Metabolism in Bacteria	2
Siderophore Pyoverdine	2
Glycerol fermenation to 1,3-propanediol	1
MLST	1
Oxidative stress	1
Photorespiration (oxidative C2 cycle)	1
Respiratory dehydrogenases 1	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Tryptophan metabolism
• Glycerolipid metabolism
• Glycerophospholipid metabolism
• Methane metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
glycerol degradation I	3	2	2
superoxide radicals degradation	2	2	1
glycerol-3-phosphate shuttle	2	2	1
glycerol-3-phosphate to cytochrome bo oxidase electron transfer	2	2	1
glycerophosphodiester degradation	2	2	1
glycerol and glycerophosphodiester degradation	4	3	2
glycerol 3-phosphate to cytochrome aa3 oxidase electron transfer	2	1	1
glycerol-3-phosphate to fumarate electron transfer	2	1	1
methanol oxidation to formaldehyde IV	2	1	1
glycerol-3-phosphate to hydrogen peroxide electron transport	2	1	1
nitrate reduction IX (dissimilatory)	2	1	1
ethanol degradation IV	3	3	1
sn-glycerol 3-phosphate anaerobic respiration	3	1	1
reactive oxygen species degradation	4	4	1
erythritol degradation I	6	1	1