Experiment set21IT026 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03480 -4.7 -6.0 ferritin compare
BPHYT_RS02570 -4.7 -3.7 phosphocarrier protein HPr compare
BPHYT_RS28575 -4.6 -1.1 transcriptional regulator compare
BPHYT_RS08975 -4.6 -4.9 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS17620 -4.5 -9.1 cytochrome C compare
BPHYT_RS12925 -4.4 -1.0 exodeoxyribonuclease III compare
BPHYT_RS33805 -4.3 -1.0 hypothetical protein compare
BPHYT_RS17625 -4.1 -12.6 cytochrome B compare
BPHYT_RS25500 -4.0 -1.6 hypothetical protein compare
BPHYT_RS29920 -4.0 -0.9 hypothetical protein compare
BPHYT_RS16270 -3.8 -3.5 phosphoglycerate kinase compare
BPHYT_RS02860 -3.6 -0.8 membrane protein compare
BPHYT_RS33695 -3.5 -3.8 molybdenum ABC transporter ATPase compare
BPHYT_RS33920 -3.4 -6.9 type II citrate synthase compare
BPHYT_RS08965 -3.4 -3.5 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS31910 -3.4 -1.6 hypothetical protein compare
BPHYT_RS04965 -3.3 -8.2 ATP-binding protein compare
BPHYT_RS16290 -3.1 -1.0 hypothetical protein compare
BPHYT_RS04890 -3.1 -1.0 cobalamin biosynthesis protein CobD compare
BPHYT_RS09620 -3.1 -3.1 aminodeoxychorismate lyase compare
BPHYT_RS11795 -3.1 -1.0 membrane protein compare
BPHYT_RS27720 -3.0 -1.2 hypothetical protein compare
BPHYT_RS35720 -3.0 -6.0 phosphopantetheinyl transferase compare
BPHYT_RS17630 -3.0 -5.4 ubiquinol-cytochrome C reductase compare
BPHYT_RS17945 -3.0 -1.8 cytochrome C biogenesis protein compare
BPHYT_RS24095 -2.9 -3.9 membrane protein compare
BPHYT_RS15710 -2.9 -1.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS34490 -2.8 -0.9 hypothetical protein compare
BPHYT_RS01620 -2.8 -5.7 sensor histidine kinase compare
BPHYT_RS12465 -2.8 -2.2 inositol monophosphatase compare
BPHYT_RS20235 -2.7 -6.2 iron ABC transporter compare
BPHYT_RS33690 -2.7 -1.3 molybdate ABC transporter permease compare
BPHYT_RS26840 -2.5 -3.0 NADH dehydrogenase compare
BPHYT_RS00980 -2.5 -1.0 GCN5 family acetyltransferase compare
BPHYT_RS16255 -2.5 -3.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS05365 -2.5 -1.0 3-ketoacyl-ACP reductase compare
BPHYT_RS14715 -2.5 -5.5 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS35955 -2.5 -1.3 hypothetical protein compare
BPHYT_RS35770 -2.5 -0.8 glyoxalase compare
BPHYT_RS04095 -2.5 -1.1 SAM-dependent methyltransferase PhcB compare
BPHYT_RS14485 -2.4 -4.5 ribonuclease E compare
BPHYT_RS30040 -2.3 -0.9 hypothetical protein compare
BPHYT_RS14490 -2.3 -12.7 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS26435 -2.3 -1.0 hypothetical protein compare
BPHYT_RS11745 -2.3 -1.2 (2Fe-2S)-binding protein compare
BPHYT_RS16880 -2.3 -1.2 malic enzyme compare
BPHYT_RS12615 -2.3 -1.1 dihydrodipicolinate synthase compare
BPHYT_RS15620 -2.2 -2.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS00115 -2.2 -1.2 acetaldehyde dehydrogenase compare
BPHYT_RS33535 -2.2 -13.5 RNA polymerase sigma factor RpoD compare
BPHYT_RS06600 -2.2 -1.6 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS06685 -2.2 -1.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS03400 -2.1 -0.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS16345 -2.1 -3.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS30265 -2.1 -1.0 hypothetical protein compare
BPHYT_RS32260 -2.1 -1.3 hypothetical protein compare
BPHYT_RS33685 -2.1 -7.4 molybdate ABC transporter substrate-binding protein compare
BPHYT_RS17095 -2.1 -2.1 proline--tRNA ligase compare
BPHYT_RS17955 -2.1 -3.7 cytochrome C compare
BPHYT_RS12055 -2.1 -13.3 phosphoenolpyruvate synthase compare
BPHYT_RS28600 -2.0 -1.4 ArsC family transcriptional regulator compare
BPHYT_RS11960 -2.0 -0.9 MarR family transcriptional regulator compare
BPHYT_RS10165 -2.0 -1.4 transcriptional regulator compare
BPHYT_RS16835 -2.0 -4.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06990 -2.0 -1.1 membrane protein compare
BPHYT_RS12845 -2.0 -9.8 ATPase compare
BPHYT_RS14190 -2.0 -5.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12985 -2.0 -1.2 amino acid acetyltransferase compare
BPHYT_RS12990 -2.0 -1.5 iron transporter compare
BPHYT_RS20880 -1.9 -0.9 polyketide cyclase compare
BPHYT_RS01240 -1.9 -1.5 hypothetical protein compare
BPHYT_RS26465 -1.9 -0.9 metallophosphoesterase compare
BPHYT_RS09355 -1.9 -1.4 LysR family transcriptional regulator compare
BPHYT_RS26390 -1.9 -0.8 antibiotic resistance protein compare
BPHYT_RS03570 -1.8 -5.0 heat-inducible transcription repressor HrcA compare
BPHYT_RS02525 -1.8 -7.3 membrane protein compare
BPHYT_RS08850 -1.8 -1.1 transcriptional regulator compare
BPHYT_RS02590 -1.8 -4.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS08235 -1.8 -0.7 nucleoprotein, Hfg, host factor I compare
BPHYT_RS09480 -1.8 -0.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS26525 -1.8 -1.1 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS23475 -1.8 -0.9 luciferase compare
BPHYT_RS05235 -1.8 -1.0 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS31400 -1.8 -1.0 methyl-accepting chemotaxis protein compare
BPHYT_RS28065 -1.8 -1.2 hypothetical protein compare
BPHYT_RS06405 -1.7 -3.8 phosphoribosylamine--glycine ligase compare
BPHYT_RS22295 -1.7 -1.0 LysR family transcriptional regulator compare
BPHYT_RS16710 -1.7 -0.7 LysR family transcriptional regulator compare
BPHYT_RS34780 -1.7 -3.5 phytoene synthase compare
BPHYT_RS19890 -1.7 -0.9 hypothetical protein compare
BPHYT_RS11635 -1.7 -0.8 RNA polymerase subunit sigma-24 compare
BPHYT_RS26490 -1.7 -0.8 hypothetical protein compare
BPHYT_RS02005 -1.7 -1.4 diguanylate phosphodiesterase compare
BPHYT_RS14865 -1.7 -1.2 UDP-glucose 6-dehydrogenase compare
BPHYT_RS12280 -1.7 -1.0 RNA helicase compare
BPHYT_RS12725 -1.7 -8.9 regulator compare
BPHYT_RS09690 -1.7 -1.0 phosphate starvation-inducible protein PsiF compare
BPHYT_RS29320 -1.7 -1.6 histidine kinase compare
BPHYT_RS36470 -1.7 -1.4 hypothetical protein compare
BPHYT_RS05610 -1.7 -4.9 DNA-cytosine methyltransferase compare
BPHYT_RS35735 -1.6 -1.1 nitroreductase compare
BPHYT_RS03640 -1.6 -2.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS13130 -1.6 -1.2 metallophosphatase compare
BPHYT_RS34280 -1.6 -1.3 hypothetical protein compare
BPHYT_RS18910 -1.6 -0.8 FlgN compare
BPHYT_RS14195 -1.6 -1.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS09515 -1.6 -3.3 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS02575 -1.6 -5.1 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS30610 -1.6 -1.3 major facilitator transporter compare
BPHYT_RS26285 -1.6 -2.4 glycogen debranching protein compare
BPHYT_RS20220 -1.6 -0.9 antibiotic synthesis protein MbtH compare
BPHYT_RS22265 -1.6 -1.0 hypothetical protein compare
BPHYT_RS02865 -1.6 -1.6 hypothetical protein compare
BPHYT_RS17075 -1.6 -2.4 ABC transporter permease compare
BPHYT_RS26855 -1.6 -2.4 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS30795 -1.6 -0.9 short-chain dehydrogenase compare
BPHYT_RS14135 -1.6 -2.3 phosphate transporter permease subunit PtsA compare
BPHYT_RS23955 -1.6 -2.3 LysR family transcriptional regulator compare
BPHYT_RS00380 -1.6 -2.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS03730 -1.5 -1.9 transcriptional repressor NrdR compare
BPHYT_RS30750 -1.5 -1.2 GntR family transcriptional regulator compare
BPHYT_RS05405 -1.5 -1.5 GCN5 family acetyltransferase compare
BPHYT_RS21905 -1.5 -0.7 IclR family transcriptional regulator compare
BPHYT_RS08415 -1.5 -1.6 hypothetical protein compare
BPHYT_RS15285 -1.5 -2.9 transcription elongation factor GreB compare
BPHYT_RS33515 -1.5 -6.9 porin compare
BPHYT_RS33580 -1.5 -3.2 geranyltranstransferase compare
BPHYT_RS12590 -1.5 -1.3 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS36140 -1.5 -1.8 hypothetical protein compare
BPHYT_RS20245 -1.5 -2.7 iron ABC transporter substrate-binding protein compare
BPHYT_RS30145 -1.5 -4.5 aconitate hydratase compare
BPHYT_RS09585 -1.5 -1.1 hypothetical protein compare
BPHYT_RS17445 -1.4 -2.3 GTP-binding protein YchF compare
BPHYT_RS28705 -1.4 -0.8 IclR family transcriptional regulator compare
BPHYT_RS22870 -1.4 -1.5 copper transporter compare
BPHYT_RS16740 -1.4 -4.8 transcriptional regulator compare
BPHYT_RS10830 -1.4 -1.2 carbon monoxide dehydrogenase compare
BPHYT_RS04895 -1.4 -2.3 adenosylcobinamide kinase compare
BPHYT_RS31305 -1.4 -1.2 alcohol dehydrogenase compare
BPHYT_RS36130 -1.4 -1.1 hypothetical protein compare
BPHYT_RS16250 -1.4 -0.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS06765 -1.4 -3.7 glutathione S-transferase compare
BPHYT_RS25210 -1.4 -0.9 drug:proton antiporter compare
BPHYT_RS27030 -1.4 -1.0 transcriptional regulator compare
BPHYT_RS06985 -1.4 -4.5 fumarate hydratase compare
BPHYT_RS32395 -1.4 -0.7 hypothetical protein compare
BPHYT_RS14400 -1.4 -1.8 anti-sigma factor compare
BPHYT_RS23255 -1.4 -1.7 TetR family transcriptional regulator compare
BPHYT_RS10810 -1.3 -2.6 glucose-methanol-choline oxidoreductase compare
BPHYT_RS06375 -1.3 -3.7 ribonuclease compare
BPHYT_RS35885 -1.3 -3.2 hypothetical protein compare
BPHYT_RS22505 -1.3 -1.9 alpha/beta hydrolase compare
BPHYT_RS30990 -1.3 -0.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS33540 -1.3 -1.9 hypothetical protein compare
BPHYT_RS31125 -1.3 -2.0 hypothetical protein compare
BPHYT_RS28300 -1.3 -0.9 histone nucleoid-structuring protein H-NS compare
BPHYT_RS20725 -1.3 -0.8 histidine kinase compare
BPHYT_RS23990 -1.3 -0.9 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS28090 -1.3 -2.3 ferredoxin compare
BPHYT_RS25560 -1.3 -1.1 RNA polymerase sigma factor compare
BPHYT_RS03215 -1.3 -1.1 TetR family transcriptional regulator compare
BPHYT_RS34295 -1.3 -0.6 fimbrial protein compare
BPHYT_RS27655 -1.3 -1.1 potassium transporter compare
BPHYT_RS10540 -1.3 -0.9 secretion protein compare
BPHYT_RS21385 -1.3 -1.1 short-chain dehydrogenase compare
BPHYT_RS34815 -1.3 -1.1 ABC transporter compare
BPHYT_RS28350 -1.3 -1.5 fatty acid desaturase compare
BPHYT_RS13645 -1.3 -8.6 threonine--tRNA ligase compare
BPHYT_RS28255 -1.3 -1.0 hypothetical protein compare
BPHYT_RS34810 -1.2 -2.7 RND transporter compare
BPHYT_RS28075 -1.2 -0.7 cytochrome B561 compare
BPHYT_RS25335 -1.2 -0.7 hypothetical protein compare
BPHYT_RS13935 -1.2 -1.0 mannosyltransferase compare
BPHYT_RS26750 -1.2 -1.5 aldolase compare
BPHYT_RS03475 -1.2 -4.4 catalase compare
BPHYT_RS03740 -1.2 -1.5 hypothetical protein compare
BPHYT_RS17520 -1.2 -2.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS25135 -1.2 -1.1 hypothetical protein compare
BPHYT_RS18270 -1.2 -4.7 phenylacetic acid degradation protein compare
BPHYT_RS33655 -1.2 -2.8 MarR family transcriptional regulator compare
BPHYT_RS06155 -1.2 -3.9 DEAD/DEAH box helicase compare
BPHYT_RS22500 -1.2 -1.9 transcriptional regulator compare
BPHYT_RS13250 -1.2 -2.1 hypothetical protein compare
BPHYT_RS01435 -1.2 -9.3 LysR family transcriptional regulator compare
BPHYT_RS31065 -1.2 -2.3 polysaccharide biosynthesis protein compare
BPHYT_RS28280 -1.2 -1.3 hypothetical protein compare
BPHYT_RS03090 -1.2 -0.8 hypothetical protein compare
BPHYT_RS10095 -1.2 -1.2 integrase compare
BPHYT_RS12785 -1.1 -2.0 Rrf2 family transcriptional regulator compare
BPHYT_RS16085 -1.1 -2.9 DeoR faimly transcriptional regulator compare
BPHYT_RS07690 -1.1 -1.3 AraC family transcriptional regulator compare
BPHYT_RS28535 -1.1 -0.6 response regulator receiver compare
BPHYT_RS09330 -1.1 -5.7 phytoene synthase compare
BPHYT_RS11075 -1.1 -1.6 membrane protein compare
BPHYT_RS29855 -1.1 -0.6 protein-tyrosine-phosphatase compare
BPHYT_RS28840 -1.1 -1.3 oxidoreductase compare
BPHYT_RS11260 -1.1 -2.3 LysR family transcriptional regulator compare
BPHYT_RS22060 -1.1 -6.8 amino acid transporter compare
BPHYT_RS01425 -1.1 -2.1 3-phosphoglycerate dehydrogenase compare
BPHYT_RS15305 -1.1 -3.6 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare


Specific Phenotypes

For 9 genes in this experiment