Experiment set21IT026 for Burkholderia phytofirmans PsJN

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Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Group: agar plate interaction
Media: LB
Culturing: BFirm_ML3a, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 1-Feb-22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 9 genes in this experiment

SEED Subsystems

Subsystem #Specific
Glycerol and Glycerol-3-phosphate Uptake and Utilization 3
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 2
Siderophore Pyoverdine 2
Experimental tye 1
Glycerol fermenation to 1,3-propanediol 1
Heme and Siroheme Biosynthesis 1
Iron acquisition in Vibrio 1
MLST 1
Respiratory dehydrogenases 1 1
Transport of Iron 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
glycerol degradation I 3 2 2
glycerol-3-phosphate shuttle 2 2 1
glycerol-3-phosphate to cytochrome bo oxidase electron transfer 2 2 1
glycerophosphodiester degradation 2 2 1
glycerol and glycerophosphodiester degradation 4 3 2
glycerol 3-phosphate to cytochrome aa3 oxidase electron transfer 2 1 1
nitrate reduction IX (dissimilatory) 2 1 1
glycerol-3-phosphate to hydrogen peroxide electron transport 2 1 1
glycerol-3-phosphate to fumarate electron transfer 2 1 1
sn-glycerol 3-phosphate anaerobic respiration 3 1 1
heme b biosynthesis II (oxygen-independent) 4 3 1
superpathway of heme b biosynthesis from uroporphyrinogen-III 6 4 1
erythritol degradation I 6 1 1
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic) 9 3 1
superpathway of bacteriochlorophyll a biosynthesis 26 6 1