Experiment set21IT024 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most important genes:

  gene name fitness t score description  
BPHYT_RS24095 -5.1 -4.2 membrane protein compare
BPHYT_RS11825 -5.0 -1.4 cytosine deaminase compare
BPHYT_RS17945 -4.9 -1.9 cytochrome C biogenesis protein compare
BPHYT_RS20245 -4.5 -4.6 iron ABC transporter substrate-binding protein compare
BPHYT_RS15620 -4.5 -3.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS05650 -4.4 -2.0 hypothetical protein compare
BPHYT_RS30995 -4.4 -1.2 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS04335 -4.3 -2.0 membrane protein compare
BPHYT_RS16270 -4.1 -3.2 phosphoglycerate kinase compare
BPHYT_RS14855 -4.1 -1.9 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS36385 -4.1 -1.1 TetR family transcriptional regulator compare
BPHYT_RS04965 -4.1 -6.7 ATP-binding protein compare
BPHYT_RS17620 -4.0 -8.2 cytochrome C compare
BPHYT_RS17625 -3.7 -12.3 cytochrome B compare
BPHYT_RS12845 -3.7 -12.8 ATPase compare
BPHYT_RS08960 -3.7 -1.7 threonine synthase compare
BPHYT_RS06175 -3.6 -3.6 LPS biosynthesis compare
BPHYT_RS20235 -3.5 -6.0 iron ABC transporter compare
BPHYT_RS17630 -3.5 -7.0 ubiquinol-cytochrome C reductase compare
BPHYT_RS11705 -3.5 -1.3 hypothetical protein compare
BPHYT_RS06530 -3.4 -1.2 membrane protein compare
BPHYT_RS17955 -3.4 -5.2 cytochrome C compare
BPHYT_RS02525 -3.3 -7.6 membrane protein compare
BPHYT_RS33920 -3.3 -6.4 type II citrate synthase compare
BPHYT_RS02595 -3.2 -1.2 sulfurtransferase compare
BPHYT_RS14060 -3.2 -2.1 peptidase M23 compare
BPHYT_RS04095 -3.2 -1.2 SAM-dependent methyltransferase PhcB compare
BPHYT_RS16245 -3.2 -4.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06190 -3.1 -2.6 heptosyltransferase compare
BPHYT_RS06990 -3.1 -1.2 membrane protein compare
BPHYT_RS04890 -3.1 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS16255 -3.0 -2.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS12465 -3.0 -2.3 inositol monophosphatase compare
BPHYT_RS22265 -3.0 -1.1 hypothetical protein compare
BPHYT_RS33580 -3.0 -6.1 geranyltranstransferase compare
BPHYT_RS29085 -3.0 -2.2 LysR family transcriptional regulator compare
BPHYT_RS09330 -3.0 -9.2 phytoene synthase compare
BPHYT_RS12615 -2.9 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS25875 -2.9 -1.1 type III secretion protein compare
BPHYT_RS09515 -2.8 -3.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16340 -2.8 -4.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS06685 -2.8 -1.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS14190 -2.8 -7.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS08150 -2.7 -1.0 membrane protein compare
BPHYT_RS17525 -2.7 -2.3 glutaredoxin compare
BPHYT_RS03645 -2.7 -1.9 tRNA dimethylallyltransferase compare
BPHYT_RS08850 -2.6 -1.4 transcriptional regulator compare
BPHYT_RS06610 -2.6 -1.0 triosephosphate isomerase compare
BPHYT_RS16835 -2.6 -6.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS24285 -2.6 -1.7 TetR family transcriptional regulator compare
BPHYT_RS07705 -2.5 -2.2 arginine succinyltransferase compare
BPHYT_RS23155 -2.5 -1.2 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS06075 -2.5 -5.9 hypothetical protein compare
BPHYT_RS03725 -2.5 -1.1 serine hydroxymethyltransferase compare
BPHYT_RS17530 -2.5 -4.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS16345 -2.4 -3.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS02975 -2.4 -2.2 membrane protein compare
BPHYT_RS20665 -2.4 -1.1 LysR family transcriptional regulator compare
BPHYT_RS18265 -2.3 -2.8 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS16840 -2.3 -1.6 transketolase compare
BPHYT_RS17490 -2.3 -2.2 haloacid dehalogenase compare
BPHYT_RS01620 -2.3 -6.4 sensor histidine kinase compare
BPHYT_RS16905 -2.3 -4.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS14755 -2.3 -2.8 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS16710 -2.3 -0.9 LysR family transcriptional regulator compare
BPHYT_RS02100 -2.3 -1.4 AsnC family transcriptional regulator compare
BPHYT_RS17095 -2.2 -2.5 proline--tRNA ligase compare
BPHYT_RS22420 -2.2 -1.2 membrane protein compare
BPHYT_RS22360 -2.2 -2.3 response regulator receiver compare
BPHYT_RS23910 -2.2 -1.5 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS17100 -2.2 -5.2 RNA pyrophosphohydrolase compare
BPHYT_RS12990 -2.2 -1.8 iron transporter compare
BPHYT_RS22870 -2.1 -1.7 copper transporter compare
BPHYT_RS06985 -2.1 -6.7 fumarate hydratase compare
BPHYT_RS09500 -2.1 -4.6 glucose-6-phosphate isomerase compare
BPHYT_RS23265 -2.1 -3.5 methylcrotonoyl-CoA carboxylase compare
BPHYT_RS06405 -2.1 -3.1 phosphoribosylamine--glycine ligase compare
BPHYT_RS28255 -2.0 -1.3 hypothetical protein compare
BPHYT_RS03640 -2.0 -2.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS02765 -2.0 -1.2 cytochrome BD oxidase subunit I compare
BPHYT_RS32395 -2.0 -0.9 hypothetical protein compare
BPHYT_RS20060 -2.0 -1.2 hypothetical protein compare
BPHYT_RS04290 -2.0 -1.3 glycosyl transferase family 2 compare
BPHYT_RS30425 -2.0 -1.3 LysR family transcriptional regulator compare
BPHYT_RS30610 -1.9 -2.0 major facilitator transporter compare
BPHYT_RS14670 -1.9 -1.1 hypothetical protein compare
BPHYT_RS18250 -1.9 -6.0 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS14245 -1.9 -1.2 membrane protein compare
BPHYT_RS15415 -1.9 -8.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS33845 -1.9 -2.2 bacteriocin production protein compare
BPHYT_RS06550 -1.8 -2.1 acetolactate synthase compare
BPHYT_RS30465 -1.8 -1.1 short-chain dehydrogenase compare
BPHYT_RS28065 -1.8 -1.3 hypothetical protein compare
BPHYT_RS15075 -1.8 -1.0 dihydrokaempferol 4-reductase compare
BPHYT_RS09620 -1.8 -2.2 aminodeoxychorismate lyase compare
BPHYT_RS25210 -1.8 -1.1 drug:proton antiporter compare
BPHYT_RS14865 -1.8 -1.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS31320 -1.8 -1.4 hypothetical protein compare
BPHYT_RS12985 -1.8 -1.2 amino acid acetyltransferase compare
BPHYT_RS06600 -1.8 -1.6 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS33840 -1.8 -6.4 amidophosphoribosyltransferase compare
BPHYT_RS12055 -1.8 -10.1 phosphoenolpyruvate synthase compare
BPHYT_RS04285 -1.8 -0.9 rhamnosyltransferase compare
BPHYT_RS18340 -1.8 -1.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS13605 -1.8 -0.8 tRNA-Pro compare
BPHYT_RS11765 -1.8 -0.9 polyamine ABC transporter permease compare
BPHYT_RS22500 -1.7 -2.2 transcriptional regulator compare
BPHYT_RS10165 -1.7 -1.4 transcriptional regulator compare
BPHYT_RS00225 -1.7 -1.8 hypothetical protein compare
BPHYT_RS10720 -1.7 -1.1 hypothetical protein compare
BPHYT_RS09895 -1.7 -1.0 LysR family transcriptional regulator compare
BPHYT_RS26840 -1.7 -3.2 NADH dehydrogenase compare
BPHYT_RS14485 -1.7 -4.0 ribonuclease E compare
BPHYT_RS33850 -1.7 -1.1 sporulation protein compare
BPHYT_RS18270 -1.7 -5.8 phenylacetic acid degradation protein compare
BPHYT_RS02865 -1.7 -1.9 hypothetical protein compare
BPHYT_RS16180 -1.7 -0.8 TetR family transcriptional regulator compare
BPHYT_RS33610 -1.6 -1.0 DNA polymerase I compare
BPHYT_RS02885 -1.6 -6.5 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS11535 -1.6 -2.4 membrane protein compare
BPHYT_RS34815 -1.6 -1.5 ABC transporter compare
BPHYT_RS17030 -1.6 -1.1 lipid hydroperoxide peroxidase compare
BPHYT_RS23270 -1.6 -0.8 enoyl-CoA hydratase compare
BPHYT_RS06350 -1.6 -1.7 chemotaxis protein CheY compare
BPHYT_RS21335 -1.6 -1.8 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS35245 -1.6 -1.9 hypothetical protein compare
BPHYT_RS12725 -1.6 -7.3 regulator compare
BPHYT_RS27030 -1.6 -1.2 transcriptional regulator compare
BPHYT_RS02590 -1.5 -3.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS30590 -1.5 -2.0 transcriptional regulator compare
BPHYT_RS26135 -1.5 -1.5 ABC transporter permease compare
BPHYT_RS06940 -1.5 -2.6 peroxiredoxin compare
BPHYT_RS08125 -1.5 -6.2 ATPase compare
BPHYT_RS33460 -1.5 -0.8 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS12065 -1.5 -2.3 RNA methyltransferase compare
BPHYT_RS34745 -1.5 -0.9 hypothetical protein compare
BPHYT_RS03570 -1.5 -3.7 heat-inducible transcription repressor HrcA compare
BPHYT_RS00955 -1.5 -2.0 DNA polymerase compare
BPHYT_RS18705 -1.5 -1.2 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS02570 -1.5 -1.9 phosphocarrier protein HPr compare
BPHYT_RS33515 -1.5 -5.6 porin compare
BPHYT_RS14195 -1.4 -1.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS14140 -1.4 -3.0 phosphate transporter permease subunit PstC compare
BPHYT_RS02300 -1.4 -1.1 acid shock protein compare
BPHYT_RS05155 -1.4 -2.9 acetyltransferase GCN5 compare
BPHYT_RS31050 -1.4 -0.7 epimerase compare
BPHYT_RS19610 -1.4 -1.2 general secretion pathway protein GspC compare
BPHYT_RS33385 -1.4 -1.2 major facilitator superfamily protein compare
BPHYT_RS31510 -1.4 -2.2 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS01095 -1.4 -0.8 hypothetical protein compare
BPHYT_RS20225 -1.4 -3.0 taurine catabolism dioxygenase tauD/tfdA compare
BPHYT_RS21045 -1.4 -2.4 bis(5'-nucleosyl)-tetraphosphatase compare
BPHYT_RS23275 -1.4 -1.5 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS26750 -1.4 -1.6 aldolase compare
BPHYT_RS18320 -1.3 -3.9 orotate phosphoribosyltransferase compare
BPHYT_RS06345 -1.3 -5.2 sensor histidine kinase compare
BPHYT_RS31385 -1.3 -1.6 ketoacyl reductase compare
BPHYT_RS33905 -1.3 -1.2 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS18260 -1.3 -4.4 phenylacetic acid degradation protein compare
BPHYT_RS20220 -1.3 -1.1 antibiotic synthesis protein MbtH compare
BPHYT_RS10750 -1.3 -0.9 LysR family transcriptional regulator compare
BPHYT_RS21505 -1.3 -1.3 amidohydrolase compare
BPHYT_RS07900 -1.3 -1.3 hypothetical protein compare
BPHYT_RS25110 -1.3 -1.6 sarcosine oxidase subunit delta compare
BPHYT_RS03090 -1.3 -1.0 hypothetical protein compare
BPHYT_RS34780 -1.3 -2.7 phytoene synthase compare
BPHYT_RS08335 -1.3 -0.9 hypothetical protein compare
BPHYT_RS31060 -1.3 -0.9 capsular polysaccharide biosynthesis protein compare
BPHYT_RS30265 -1.3 -0.8 hypothetical protein compare
BPHYT_RS36340 -1.3 -1.7 hypothetical protein compare
BPHYT_RS10710 -1.3 -1.4 sensor histidine kinase compare
BPHYT_RS19570 -1.3 -6.7 sodium/hydrogen exchanger compare
BPHYT_RS06710 -1.3 -0.9 hypothetical protein compare
BPHYT_RS35885 -1.3 -2.4 hypothetical protein compare
BPHYT_RS24315 -1.2 -1.2 phosphoribosyltransferase compare
BPHYT_RS26450 -1.2 -1.7 transcriptional regulator compare
BPHYT_RS16175 -1.2 -1.4 hemolysin D compare
BPHYT_RS08765 -1.2 -0.6 ABC transporter ATP-binding protein compare
BPHYT_RS10945 -1.2 -1.2 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS09445 -1.2 -3.7 trigger factor compare
BPHYT_RS12785 -1.2 -2.4 Rrf2 family transcriptional regulator compare
BPHYT_RS26390 -1.2 -0.7 antibiotic resistance protein compare
BPHYT_RS07760 -1.2 -1.5 diguanylate phosphodiesterase compare
BPHYT_RS06325 -1.2 -3.0 ATPase compare
BPHYT_RS36460 -1.2 -1.9 hypothetical protein compare
BPHYT_RS07050 -1.2 -1.0 membrane protein compare
BPHYT_RS12290 -1.2 -1.6 universal stress protein UspA compare
BPHYT_RS04670 -1.2 -1.7 sulfurtransferase compare
BPHYT_RS04455 -1.2 -0.9 glycosyl transferase compare
BPHYT_RS11745 -1.2 -0.9 (2Fe-2S)-binding protein compare
BPHYT_RS06900 -1.2 -3.0 aspartate aminotransferase compare
BPHYT_RS13245 -1.2 -4.1 hypothetical protein compare
BPHYT_RS31760 -1.2 -1.1 aryldialkylphosphatase compare
BPHYT_RS17520 -1.2 -2.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS18255 -1.2 -1.3 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS04955 -1.2 -1.2 methionyl-tRNA synthetase compare
BPHYT_RS16675 -1.2 -0.7 dihydroorotase compare
BPHYT_RS03480 -1.2 -4.0 ferritin compare
BPHYT_RS32415 -1.2 -1.7 translation elongation factor compare
BPHYT_RS28705 -1.2 -0.8 IclR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in agar plate interaction experiments