Experiment set21IT018 for Burkholderia phytofirmans PsJN

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Group: agar plate interaction
Media: LB
Culturing: BFirm_ML3a, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 1-Feb-22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 5 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Carboxysome	1
Fatty Acid Biosynthesis FASII	1
NAD and NADP cofactor biosynthesis global	1
Quinolinic acid and its derivatives	1
Respiratory dehydrogenases 1	1
Transcription initiation, bacterial sigma factors	1
mycolic acid synthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Fatty acid biosynthesis
• Oxidative phosphorylation
• Tryptophan metabolism
• Biosynthesis of unsaturated fatty acids

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
NADH to cytochrome bo oxidase electron transfer I	2	2	1
NADH to cytochrome bd oxidase electron transfer I	2	2	1
aerobic respiration III (alternative oxidase pathway)	3	3	1
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)	12	12	3
gondoate biosynthesis (anaerobic)	4	4	1
NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde	4	4	1
aerobic respiration I (cytochrome c)	4	3	1
palmitate biosynthesis III	29	28	7
tetradecanoate biosynthesis (mitochondria)	25	23	6
palmitate biosynthesis II (type II fatty acid synthase)	31	29	7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)	9	9	2
NAD de novo biosynthesis II (from tryptophan)	9	8	2
oleate biosynthesis IV (anaerobic)	14	13	3
superpathway of fatty acids biosynthesis (E. coli)	53	50	11
cis-vaccenate biosynthesis	5	5	1
fatty acid elongation -- saturated	5	5	1
superpathway of unsaturated fatty acids biosynthesis (E. coli)	20	19	4
L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde	5	4	1
8-amino-7-oxononanoate biosynthesis IV	5	4	1
superpathway of fatty acid biosynthesis II (plant)	43	38	8
8-amino-7-oxononanoate biosynthesis I	11	9	2
anteiso-branched-chain fatty acid biosynthesis	34	30	6
odd iso-branched-chain fatty acid biosynthesis	34	30	6
even iso-branched-chain fatty acid biosynthesis	34	30	6
stearate biosynthesis II (bacteria and plants)	6	5	1
(5Z)-dodecenoate biosynthesis I	6	5	1
(5Z)-dodecenoate biosynthesis II	6	4	1
stearate biosynthesis IV	6	4	1
NAD(P)/NADPH interconversion	6	3	1
Fe(II) oxidation	6	2	1
petroselinate biosynthesis	6	2	1
streptorubin B biosynthesis	34	20	5
2-nitrobenzoate degradation I	7	7	1
superpathway of NAD biosynthesis in eukaryotes	14	9	2
biotin biosynthesis I	15	13	2
superpathway of fatty acid biosynthesis I (E. coli)	16	14	2
2-allylmalonyl-CoA biosynthesis	8	2	1
benzoyl-CoA degradation III (anaerobic)	9	3	1
L-tryptophan degradation IX	12	11	1
L-tryptophan degradation XII (Geobacillus)	12	11	1
L-tryptophan degradation III (eukaryotic)	15	10	1
L-tryptophan degradation XI (mammalian, via kynurenine)	23	11	1
mycolate biosynthesis	205	25	5
superpathway of mycolate biosynthesis	239	26	5