Experiment set21IT013 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
BPHYT_RS20235 -4.4 -6.9 iron ABC transporter compare
BPHYT_RS15075 -4.1 -1.9 dihydrokaempferol 4-reductase compare
BPHYT_RS16245 -4.0 -4.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16710 -3.9 -1.1 LysR family transcriptional regulator compare
BPHYT_RS09515 -3.8 -3.7 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06190 -3.7 -3.6 heptosyltransferase compare
BPHYT_RS12590 -3.7 -2.4 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS08960 -3.6 -1.7 threonine synthase compare
BPHYT_RS04955 -3.4 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS12845 -3.4 -14.4 ATPase compare
BPHYT_RS16175 -3.3 -2.0 hemolysin D compare
BPHYT_RS26840 -3.3 -6.8 NADH dehydrogenase compare
BPHYT_RS04965 -3.3 -8.1 ATP-binding protein compare
BPHYT_RS18590 -3.1 -0.8 hypothetical protein compare
BPHYT_RS04290 -3.1 -1.7 glycosyl transferase family 2 compare
BPHYT_RS17240 -3.0 -1.2 cell division protein FtsW compare
BPHYT_RS09330 -3.0 -11.6 phytoene synthase compare
BPHYT_RS12465 -3.0 -2.3 inositol monophosphatase compare
BPHYT_RS06075 -3.0 -6.1 hypothetical protein compare
BPHYT_RS12615 -2.9 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS12985 -2.9 -1.6 amino acid acetyltransferase compare
BPHYT_RS02525 -2.9 -9.6 membrane protein compare
BPHYT_RS06175 -2.8 -5.9 LPS biosynthesis compare
BPHYT_RS15710 -2.8 -1.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS01630 -2.8 -2.5 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS33920 -2.8 -6.9 type II citrate synthase compare
BPHYT_RS20245 -2.7 -5.5 iron ABC transporter substrate-binding protein compare
BPHYT_RS03410 -2.7 -2.4 queuine tRNA-ribosyltransferase compare
BPHYT_RS24315 -2.7 -2.1 phosphoribosyltransferase compare
BPHYT_RS16255 -2.7 -3.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS14190 -2.7 -7.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS06610 -2.6 -1.0 triosephosphate isomerase compare
BPHYT_RS34780 -2.6 -3.9 phytoene synthase compare
BPHYT_RS16340 -2.6 -5.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS08850 -2.6 -1.4 transcriptional regulator compare
BPHYT_RS33580 -2.5 -5.8 geranyltranstransferase compare
BPHYT_RS15620 -2.5 -2.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08765 -2.5 -1.0 ABC transporter ATP-binding protein compare
BPHYT_RS03640 -2.5 -3.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS36275 -2.4 -1.5 hypothetical protein compare
BPHYT_RS02130 -2.4 -2.9 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS09160 -2.3 -4.1 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS14195 -2.3 -2.2 carbamoyl phosphate synthase small subunit compare
BPHYT_RS10165 -2.3 -1.4 transcriptional regulator compare
BPHYT_RS16345 -2.3 -4.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS06405 -2.3 -4.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS17620 -2.3 -7.1 cytochrome C compare
BPHYT_RS22265 -2.3 -1.3 hypothetical protein compare
BPHYT_RS17945 -2.3 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS11765 -2.3 -1.1 polyamine ABC transporter permease compare
BPHYT_RS34815 -2.2 -1.9 ABC transporter compare
BPHYT_RS36525 -2.2 -3.9 hypothetical protein compare
BPHYT_RS20220 -2.2 -1.5 antibiotic synthesis protein MbtH compare
BPHYT_RS20225 -2.2 -5.3 taurine catabolism dioxygenase tauD/tfdA compare
BPHYT_RS21335 -2.1 -2.2 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS28705 -2.1 -1.2 IclR family transcriptional regulator compare
BPHYT_RS16835 -2.1 -6.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06400 -2.1 -3.7 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS03400 -2.1 -0.8 ATP-dependent DNA helicase RecG compare
BPHYT_RS33155 -2.1 -1.8 hypothetical protein compare
BPHYT_RS27175 -2.1 -1.0 DNA-binding protein compare
BPHYT_RS17625 -2.1 -9.7 cytochrome B compare
BPHYT_RS06530 -2.1 -1.6 membrane protein compare
BPHYT_RS16270 -2.0 -2.8 phosphoglycerate kinase compare
BPHYT_RS33840 -2.0 -6.4 amidophosphoribosyltransferase compare
BPHYT_RS03480 -2.0 -6.1 ferritin compare
BPHYT_RS06325 -2.0 -3.6 ATPase compare
BPHYT_RS03730 -2.0 -2.6 transcriptional repressor NrdR compare
BPHYT_RS11705 -1.9 -1.2 hypothetical protein compare
BPHYT_RS28930 -1.9 -1.1 chromosome partitioning protein ParA compare
BPHYT_RS17095 -1.9 -2.2 proline--tRNA ligase compare
BPHYT_RS12990 -1.9 -2.0 iron transporter compare
BPHYT_RS04720 -1.9 -5.0 transcriptional regulator compare
BPHYT_RS12280 -1.9 -1.2 RNA helicase compare
BPHYT_RS21905 -1.9 -0.9 IclR family transcriptional regulator compare
BPHYT_RS01660 -1.9 -2.5 hypothetical protein compare
BPHYT_RS30610 -1.8 -1.8 major facilitator transporter compare
BPHYT_RS17035 -1.8 -2.7 sugar kinase compare
BPHYT_RS05155 -1.8 -3.7 acetyltransferase GCN5 compare
BPHYT_RS04285 -1.8 -0.9 rhamnosyltransferase compare
BPHYT_RS18340 -1.8 -1.4 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS08130 -1.8 -1.4 transposase compare
BPHYT_RS02590 -1.8 -5.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS23410 -1.8 -2.0 hypothetical protein compare
BPHYT_RS18250 -1.7 -6.2 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS17955 -1.7 -5.5 cytochrome C compare
BPHYT_RS14855 -1.7 -1.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS33645 -1.7 -5.9 homoserine kinase compare
BPHYT_RS02975 -1.7 -1.8 membrane protein compare
BPHYT_RS17530 -1.7 -4.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS10850 -1.7 -1.1 LysR family transcriptional regulator compare
BPHYT_RS23275 -1.7 -2.2 3-methylcrotonyl-CoA carboxylase subunit alpha compare
BPHYT_RS18705 -1.7 -1.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS31260 -1.7 -1.4 histidine kinase compare
BPHYT_RS20155 -1.7 -1.3 hypothetical protein compare
BPHYT_RS35720 -1.7 -6.0 phosphopantetheinyl transferase compare
BPHYT_RS13450 -1.7 -1.2 GntR family transcriptional regulator compare
BPHYT_RS06685 -1.7 -1.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS09480 -1.7 -0.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS36435 -1.6 -2.3 hypothetical protein compare
BPHYT_RS08410 -1.6 -1.0 dehydrogenase compare
BPHYT_RS27560 -1.6 -1.2 histidine kinase compare
BPHYT_RS33135 -1.6 -1.8 LysR family transcriptional regulator compare
BPHYT_RS05395 -1.6 -1.3 hypothetical protein compare
BPHYT_RS19565 -1.6 -6.5 gamma-glutamyl:cysteine ligase compare
BPHYT_RS04455 -1.6 -1.0 glycosyl transferase compare
BPHYT_RS11745 -1.6 -1.1 (2Fe-2S)-binding protein compare
BPHYT_RS06470 -1.6 -1.1 membrane protein compare
BPHYT_RS34805 -1.6 -5.2 ABC transporter compare
BPHYT_RS00705 -1.6 -1.3 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS27295 -1.6 -1.5 hypothetical protein compare
BPHYT_RS17630 -1.6 -4.3 ubiquinol-cytochrome C reductase compare
BPHYT_RS18265 -1.6 -1.8 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS04015 -1.6 -1.6 glycosyl transferase compare
BPHYT_RS23445 -1.6 -1.4 hexuronate transporter compare
BPHYT_RS17920 -1.6 -0.9 protein CyaY compare
BPHYT_RS07515 -1.6 -1.3 photosystem reaction center subunit H compare
BPHYT_RS04340 -1.5 -3.0 hypothetical protein compare
BPHYT_RS12925 -1.5 -0.8 exodeoxyribonuclease III compare
BPHYT_RS22360 -1.5 -1.7 response regulator receiver compare
BPHYT_RS06375 -1.5 -3.4 ribonuclease compare
BPHYT_RS12840 -1.5 -2.7 pyruvate dehydrogenase compare
BPHYT_RS30775 -1.5 -1.5 gluconate 2-dehydrogenase compare
BPHYT_RS32150 -1.5 -1.1 hypothetical protein compare
BPHYT_RS22860 -1.5 -0.8 chemotaxis protein CheY compare
BPHYT_RS28280 -1.5 -1.8 hypothetical protein compare
BPHYT_RS19570 -1.5 -7.3 sodium/hydrogen exchanger compare
BPHYT_RS14865 -1.5 -1.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS04630 -1.5 -2.3 amino acid ABC transporter permease compare
BPHYT_RS14585 -1.5 -1.6 hypothetical protein compare
BPHYT_RS09500 -1.5 -4.8 glucose-6-phosphate isomerase compare
BPHYT_RS32260 -1.5 -1.1 hypothetical protein compare
BPHYT_RS06985 -1.5 -4.4 fumarate hydratase compare
BPHYT_RS18270 -1.5 -7.2 phenylacetic acid degradation protein compare
BPHYT_RS21330 -1.5 -1.3 hypothetical protein compare
BPHYT_RS14670 -1.5 -1.0 hypothetical protein compare
BPHYT_RS08125 -1.4 -6.1 ATPase compare
BPHYT_RS18260 -1.4 -4.7 phenylacetic acid degradation protein compare
BPHYT_RS31840 -1.4 -1.0 anhydrase compare
BPHYT_RS16840 -1.4 -1.9 transketolase compare
BPHYT_RS22455 -1.4 -0.9 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS09105 -1.4 -4.5 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS35675 -1.4 -1.6 short-chain dehydrogenase compare
BPHYT_RS08245 -1.4 -4.3 anti-sigma factor compare
BPHYT_RS16065 -1.4 -0.7 LacI family transcriptional regulator compare
BPHYT_RS26025 -1.4 -0.7 hypothetical protein compare
BPHYT_RS18320 -1.4 -5.2 orotate phosphoribosyltransferase compare
BPHYT_RS24590 -1.4 -0.7 DeoR faimly transcriptional regulator compare
BPHYT_RS24285 -1.4 -1.2 TetR family transcriptional regulator compare
BPHYT_RS08965 -1.4 -3.5 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS23265 -1.4 -2.8 methylcrotonoyl-CoA carboxylase compare
BPHYT_RS00915 -1.4 -7.4 IclR family transcriptional regulator compare
BPHYT_RS17445 -1.4 -2.7 GTP-binding protein YchF compare
BPHYT_RS31815 -1.4 -2.8 hypothetical protein compare
BPHYT_RS28870 -1.4 -1.6 MarR family transcriptional regulator compare
BPHYT_RS30995 -1.4 -0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS21130 -1.4 -1.9 F420-dependent oxidoreductase compare
BPHYT_RS14400 -1.4 -2.2 anti-sigma factor compare
BPHYT_RS14345 -1.4 -2.9 beta-hexosaminidase compare
BPHYT_RS30040 -1.3 -0.8 hypothetical protein compare
BPHYT_RS08955 -1.3 -2.7 homoserine dehydrogenase compare
BPHYT_RS05175 -1.3 -2.6 hypothetical protein compare
BPHYT_RS24565 -1.3 -3.0 membrane protein compare
BPHYT_RS04385 -1.3 -2.0 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS29085 -1.3 -1.6 LysR family transcriptional regulator compare
BPHYT_RS20475 -1.3 -1.6 hypothetical protein compare
BPHYT_RS30505 -1.3 -1.6 ABC transporter permease compare
BPHYT_RS21170 -1.3 -1.4 LysR family transcriptional regulator compare
BPHYT_RS35310 -1.3 -1.2 GCN5 family N-acetyltransferase compare
BPHYT_RS11155 -1.3 -0.9 hypothetical protein compare
BPHYT_RS27495 -1.3 -0.7 hypothetical protein compare
BPHYT_RS36130 -1.3 -1.2 hypothetical protein compare
BPHYT_RS20715 -1.3 -1.3 peptidase compare
BPHYT_RS14140 -1.3 -2.6 phosphate transporter permease subunit PstC compare
BPHYT_RS27060 -1.3 -1.5 photosystem reaction center subunit H compare
BPHYT_RS06600 -1.3 -1.4 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS29065 -1.3 -2.2 hypothetical protein compare
BPHYT_RS16905 -1.3 -2.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS25470 -1.3 -1.1 alkylhydroperoxidase compare
BPHYT_RS31400 -1.3 -0.9 methyl-accepting chemotaxis protein compare
BPHYT_RS26305 -1.3 -2.3 exonuclease compare
BPHYT_RS25935 -1.3 -1.7 type III secretion protein compare
BPHYT_RS16085 -1.3 -1.6 DeoR faimly transcriptional regulator compare
BPHYT_RS08385 -1.3 -1.1 secretion protein compare
BPHYT_RS14245 -1.3 -0.9 membrane protein compare
BPHYT_RS23675 -1.3 -1.2 lysine transporter LysE compare
BPHYT_RS23270 -1.2 -0.8 enoyl-CoA hydratase compare
BPHYT_RS27890 -1.2 -0.7 hypothetical protein compare
BPHYT_RS33845 -1.2 -2.2 bacteriocin production protein compare
BPHYT_RS02860 -1.2 -0.6 membrane protein compare
BPHYT_RS32475 -1.2 -1.3 dihydroxyacetone kinase compare
BPHYT_RS33690 -1.2 -1.1 molybdate ABC transporter permease compare
BPHYT_RS14180 -1.2 -1.6 membrane protein compare
BPHYT_RS16320 -1.2 -2.6 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS36370 -1.2 -3.8 integrase compare
BPHYT_RS02330 -1.2 -1.3 IclR family transcriptional regulator compare
BPHYT_RS25780 -1.2 -0.5 DeoR faimly transcriptional regulator compare
BPHYT_RS14755 -1.2 -1.4 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS35885 -1.2 -2.1 hypothetical protein compare
BPHYT_RS11635 -1.2 -0.7 RNA polymerase subunit sigma-24 compare


Specific Phenotypes

For 2 genes in this experiment