Experiment set21IT011 for Burkholderia phytofirmans PsJN

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Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03480 -5.6 -7.7 ferritin compare
BPHYT_RS15620 -4.8 -3.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS04370 -4.7 -1.3 glycosyl transferase compare
BPHYT_RS14855 -4.3 -2.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS02570 -4.3 -4.6 phosphocarrier protein HPr compare
BPHYT_RS09515 -4.0 -3.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS16710 -4.0 -1.1 LysR family transcriptional regulator compare
BPHYT_RS08960 -3.8 -1.8 threonine synthase compare
BPHYT_RS26470 -3.5 -1.4 MFS transporter compare
BPHYT_RS28705 -3.5 -1.3 IclR family transcriptional regulator compare
BPHYT_RS09825 -3.3 -1.9 Fe-S protein compare
BPHYT_RS27295 -3.2 -1.6 hypothetical protein compare
BPHYT_RS26840 -3.2 -5.2 NADH dehydrogenase compare
BPHYT_RS28485 -3.0 -1.2 GntR family transcriptional regulator compare
BPHYT_RS17945 -3.0 -2.1 cytochrome C biogenesis protein compare
BPHYT_RS06190 -3.0 -3.8 heptosyltransferase compare
BPHYT_RS20235 -2.9 -7.1 iron ABC transporter compare
BPHYT_RS26855 -2.9 -2.7 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS04335 -2.8 -1.7 membrane protein compare
BPHYT_RS32260 -2.8 -1.4 hypothetical protein compare
BPHYT_RS08850 -2.8 -1.5 transcriptional regulator compare
BPHYT_RS16270 -2.8 -2.5 phosphoglycerate kinase compare
BPHYT_RS09480 -2.8 -1.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03090 -2.7 -2.1 hypothetical protein compare
BPHYT_RS31910 -2.7 -1.7 hypothetical protein compare
BPHYT_RS26465 -2.7 -1.2 metallophosphoesterase compare
BPHYT_RS16255 -2.7 -4.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS29620 -2.6 -1.0 hypothetical protein compare
BPHYT_RS36385 -2.6 -1.0 TetR family transcriptional regulator compare
BPHYT_RS16175 -2.6 -2.4 hemolysin D compare
BPHYT_RS02525 -2.5 -6.8 membrane protein compare
BPHYT_RS29695 -2.5 -1.9 hypothetical protein compare
BPHYT_RS06975 -2.4 -2.1 glutamate racemase compare
BPHYT_RS33535 -2.4 -14.9 RNA polymerase sigma factor RpoD compare
BPHYT_RS08995 -2.4 -1.2 hypothetical protein compare
BPHYT_RS04890 -2.3 -1.2 cobalamin biosynthesis protein CobD compare
BPHYT_RS33920 -2.3 -6.3 type II citrate synthase compare
BPHYT_RS17520 -2.3 -4.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS06400 -2.3 -4.9 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS26080 -2.3 -1.2 ABC transporter ATPase compare
BPHYT_RS04965 -2.3 -8.0 ATP-binding protein compare
BPHYT_RS14550 -2.3 -1.0 tRNA-Asn compare
BPHYT_RS13610 -2.3 -4.2 MerR family transcriptional regulator compare
BPHYT_RS04095 -2.3 -1.1 SAM-dependent methyltransferase PhcB compare
BPHYT_RS08975 -2.2 -3.5 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS35720 -2.2 -4.5 phosphopantetheinyl transferase compare
BPHYT_RS16245 -2.2 -4.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS15710 -2.2 -1.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS02660 -2.2 -1.3 membrane protein compare
BPHYT_RS04290 -2.2 -1.4 glycosyl transferase family 2 compare
BPHYT_RS02860 -2.1 -0.8 membrane protein compare
BPHYT_RS24665 -2.1 -1.5 ABC transporter permease compare
BPHYT_RS05320 -2.0 -1.3 beta-lactamase compare
BPHYT_RS33580 -2.0 -5.8 geranyltranstransferase compare
BPHYT_RS35205 -2.0 -2.2 hypothetical protein compare
BPHYT_RS02965 -2.0 -2.9 membrane protein compare
BPHYT_RS34780 -2.0 -4.3 phytoene synthase compare
BPHYT_RS07165 -2.0 -1.6 peptide ABC transporter permease compare
BPHYT_RS18340 -2.0 -1.4 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS08965 -2.0 -4.0 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS34655 -2.0 -1.5 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS16320 -1.9 -3.3 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS14490 -1.9 -9.8 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS06375 -1.9 -4.5 ribonuclease compare
BPHYT_RS33685 -1.9 -8.2 molybdate ABC transporter substrate-binding protein compare
BPHYT_RS14715 -1.9 -6.1 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS20220 -1.9 -1.4 antibiotic synthesis protein MbtH compare
BPHYT_RS30140 -1.9 -1.0 3-methylitaconate isomerase compare
BPHYT_RS10135 -1.9 -1.0 hypothetical protein compare
BPHYT_RS20715 -1.9 -1.4 peptidase compare
BPHYT_RS07935 -1.9 -1.5 Rrf2 family transcriptional regulator compare
BPHYT_RS12845 -1.8 -10.7 ATPase compare
BPHYT_RS34810 -1.8 -3.5 RND transporter compare
BPHYT_RS25270 -1.8 -2.3 multidrug MFS transporter compare
BPHYT_RS09620 -1.8 -2.6 aminodeoxychorismate lyase compare
BPHYT_RS06325 -1.8 -5.4 ATPase compare
BPHYT_RS14190 -1.8 -5.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12510 -1.8 -2.1 RNA-binding protein compare
BPHYT_RS04455 -1.7 -1.0 glycosyl transferase compare
BPHYT_RS06600 -1.7 -1.6 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS16470 -1.7 -3.2 DeoR faimly transcriptional regulator compare
BPHYT_RS12925 -1.7 -0.9 exodeoxyribonuclease III compare
BPHYT_RS12465 -1.7 -2.1 inositol monophosphatase compare
BPHYT_RS33845 -1.7 -1.5 bacteriocin production protein compare
BPHYT_RS25800 -1.7 -1.3 sugar ABC transporter permease compare
BPHYT_RS25140 -1.7 -3.0 hypothetical protein compare
BPHYT_RS31305 -1.7 -1.7 alcohol dehydrogenase compare
BPHYT_RS24500 -1.7 -1.3 histidine kinase compare
BPHYT_RS33045 -1.6 -1.3 response regulator receiver protein compare
BPHYT_RS10095 -1.6 -1.7 integrase compare
BPHYT_RS04285 -1.6 -0.9 rhamnosyltransferase compare
BPHYT_RS17630 -1.6 -4.5 ubiquinol-cytochrome C reductase compare
BPHYT_RS06410 -1.6 -1.9 transcriptional regulator compare
BPHYT_RS36525 -1.6 -3.2 hypothetical protein compare
BPHYT_RS20245 -1.6 -4.0 iron ABC transporter substrate-binding protein compare
BPHYT_RS33695 -1.6 -3.5 molybdenum ABC transporter ATPase compare
BPHYT_RS33690 -1.6 -1.6 molybdate ABC transporter permease compare
BPHYT_RS09330 -1.5 -8.1 phytoene synthase compare
BPHYT_RS05610 -1.5 -6.8 DNA-cytosine methyltransferase compare
BPHYT_RS05980 -1.5 -4.1 heat shock protein 90 compare
BPHYT_RS23515 -1.5 -2.9 porin compare
BPHYT_RS33655 -1.5 -4.3 MarR family transcriptional regulator compare
BPHYT_RS03640 -1.5 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06175 -1.5 -3.1 LPS biosynthesis compare
BPHYT_RS21335 -1.5 -1.9 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS04720 -1.5 -4.9 transcriptional regulator compare
BPHYT_RS25340 -1.5 -2.0 sulfatase compare
BPHYT_RS16340 -1.5 -3.8 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS13605 -1.5 -0.8 tRNA-Pro compare
BPHYT_RS22910 -1.5 -0.8 hypothetical protein compare
BPHYT_RS03570 -1.4 -4.6 heat-inducible transcription repressor HrcA compare
BPHYT_RS17620 -1.4 -5.9 cytochrome C compare
BPHYT_RS07325 -1.4 -0.6 GntR family transcriptional regulator compare
BPHYT_RS33075 -1.4 -3.6 sulfatase maturase compare
BPHYT_RS03170 -1.4 -1.9 membrane protein compare
BPHYT_RS17075 -1.4 -2.3 ABC transporter permease compare
BPHYT_RS25370 -1.4 -1.4 acyl-CoA dehydrogenase compare
BPHYT_RS02865 -1.4 -1.5 hypothetical protein compare
BPHYT_RS02005 -1.4 -1.3 diguanylate phosphodiesterase compare
BPHYT_RS03400 -1.4 -0.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS34085 -1.4 -1.6 polyamine ABC transporter permease compare
BPHYT_RS23455 -1.4 -0.8 phosphorylase compare
BPHYT_RS06405 -1.4 -4.8 phosphoribosylamine--glycine ligase compare
BPHYT_RS36360 -1.4 -2.0 hypothetical protein compare
BPHYT_RS12840 -1.4 -2.3 pyruvate dehydrogenase compare
BPHYT_RS28100 -1.4 -2.7 hypothetical protein compare
BPHYT_RS16740 -1.3 -4.6 transcriptional regulator compare
BPHYT_RS25500 -1.3 -1.1 hypothetical protein compare
BPHYT_RS16345 -1.3 -2.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS03475 -1.3 -6.4 catalase compare
BPHYT_RS31545 -1.3 -2.1 membrane protein compare
BPHYT_RS14180 -1.3 -2.2 membrane protein compare
BPHYT_RS17625 -1.3 -9.2 cytochrome B compare
BPHYT_RS12725 -1.3 -7.9 regulator compare
BPHYT_RS29085 -1.3 -1.7 LysR family transcriptional regulator compare
BPHYT_RS35215 -1.3 -1.0 dehydrogenase compare
BPHYT_RS18630 -1.3 -2.9 allophanate hydrolase compare
BPHYT_RS08385 -1.3 -1.1 secretion protein compare
BPHYT_RS17490 -1.3 -1.8 haloacid dehalogenase compare
BPHYT_RS18270 -1.3 -5.9 phenylacetic acid degradation protein compare
BPHYT_RS16835 -1.3 -4.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06320 -1.3 -1.2 chemotaxis protein CheY compare
BPHYT_RS27865 -1.3 -2.0 ATPase compare
BPHYT_RS22300 -1.3 -1.4 hypothetical protein compare
BPHYT_RS28360 -1.3 -1.0 carboxymuconolactone decarboxylase compare
BPHYT_RS18635 -1.3 -1.8 LamB/YcsF family protein compare
BPHYT_RS26135 -1.3 -1.4 ABC transporter permease compare
BPHYT_RS31260 -1.3 -1.2 histidine kinase compare
BPHYT_RS24590 -1.3 -0.7 DeoR faimly transcriptional regulator compare
BPHYT_RS30145 -1.3 -3.8 aconitate hydratase compare
BPHYT_RS04220 -1.3 -4.7 hypothetical protein compare
BPHYT_RS18265 -1.3 -1.3 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS06530 -1.3 -1.3 membrane protein compare
BPHYT_RS17955 -1.3 -3.9 cytochrome C compare
BPHYT_RS15320 -1.2 -1.5 hypothetical protein compare
BPHYT_RS18255 -1.2 -1.8 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS20665 -1.2 -0.8 LysR family transcriptional regulator compare
BPHYT_RS33610 -1.2 -0.8 DNA polymerase I compare
BPHYT_RS18260 -1.2 -4.2 phenylacetic acid degradation protein compare
BPHYT_RS12615 -1.2 -1.0 dihydrodipicolinate synthase compare
BPHYT_RS30810 -1.2 -1.3 transcriptional regulator compare
BPHYT_RS26305 -1.2 -2.0 exonuclease compare
BPHYT_RS36185 -1.2 -2.1 hypothetical protein compare
BPHYT_RS16880 -1.2 -1.1 malic enzyme compare
BPHYT_RS16645 -1.2 -3.5 anhydro-N-acetylmuramic acid kinase compare
BPHYT_RS02575 -1.2 -3.5 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS35945 -1.2 -1.7 response regulator receiver compare
BPHYT_RS31905 -1.2 -1.3 hypothetical protein compare
BPHYT_RS14525 -1.2 -6.5 sodium:proton antiporter compare
BPHYT_RS14485 -1.2 -3.0 ribonuclease E compare
BPHYT_RS29015 -1.2 -1.1 RND transporter compare
BPHYT_RS35165 -1.2 -1.7 peptidase compare
BPHYT_RS20725 -1.2 -0.9 histidine kinase compare
BPHYT_RS34805 -1.1 -4.3 ABC transporter compare
BPHYT_RS36090 -1.1 -1.4 hypothetical protein compare
BPHYT_RS33515 -1.1 -3.8 porin compare
BPHYT_RS10830 -1.1 -1.2 carbon monoxide dehydrogenase compare
BPHYT_RS17635 -1.1 -2.6 metal-binding protein compare
BPHYT_RS04340 -1.1 -2.1 hypothetical protein compare
BPHYT_RS32845 -1.1 -2.6 ABC transporter substrate-binding protein compare
BPHYT_RS16420 -1.1 -3.0 copper resistance protein CopD compare
BPHYT_RS04955 -1.1 -1.3 methionyl-tRNA synthetase compare
BPHYT_RS24760 -1.1 -1.6 cytochrome B561 compare
BPHYT_RS20155 -1.1 -0.9 hypothetical protein compare
BPHYT_RS24175 -1.1 -1.5 C4-dicarboxylate ABC transporter compare
BPHYT_RS33540 -1.1 -1.2 hypothetical protein compare
BPHYT_RS29320 -1.1 -1.5 histidine kinase compare
BPHYT_RS01435 -1.1 -9.3 LysR family transcriptional regulator compare
BPHYT_RS11810 -1.1 -1.0 LysR family transcriptional regulator compare
BPHYT_RS33980 -1.1 -5.1 aconitate hydratase compare
BPHYT_RS05650 -1.1 -1.0 hypothetical protein compare
BPHYT_RS22060 -1.1 -7.8 amino acid transporter compare
BPHYT_RS15325 -1.1 -1.6 ribonuclease PH compare
BPHYT_RS06195 -1.1 -1.3 membrane protein compare
BPHYT_RS06075 -1.1 -4.2 hypothetical protein compare
BPHYT_RS23570 -1.1 -2.8 chemotaxis protein CheY compare
BPHYT_RS16475 -1.1 -1.4 hypothetical protein compare
BPHYT_RS14195 -1.1 -1.1 carbamoyl phosphate synthase small subunit compare
BPHYT_RS30465 -1.1 -0.9 short-chain dehydrogenase compare
BPHYT_RS18250 -1.1 -4.4 phenylacetate-CoA oxygenase subunit PaaA compare


Specific Phenotypes

For 9 genes in this experiment