Experiment set21IT011 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with no fungus

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS10345 +2.5 2.5 flagellar motor protein MotB compare
BPHYT_RS14900 +2.4 6.9 prephenate dehydrogenase compare
BPHYT_RS25780 +2.3 1.8 DeoR faimly transcriptional regulator compare
BPHYT_RS21215 +2.2 6.5 Crp/Fnr family transcriptional regulator compare
BPHYT_RS17395 +2.0 5.1 anthranilate synthase subunit II compare
BPHYT_RS19890 +2.0 2.8 hypothetical protein compare
BPHYT_RS14915 +1.9 10.5 phosphoserine aminotransferase compare
BPHYT_RS03150 +1.9 15.1 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS01455 +1.9 2.2 peptide deformylase compare
BPHYT_RS16495 +1.9 9.4 glycerol kinase compare
BPHYT_RS30085 +1.9 1.4 hypothetical protein compare
BPHYT_RS35230 +1.9 3.1 type 11 methyltransferase compare
BPHYT_RS20270 +1.8 3.6 L-ornithine 5-monooxygenase compare
BPHYT_RS17400 +1.8 12.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS17390 +1.8 10.5 anthranilate synthase subunit I compare
BPHYT_RS16490 +1.8 7.8 glycerol-3-phosphate dehydrogenase compare
BPHYT_RS16500 +1.7 7.0 MIP family channel protein compare
BPHYT_RS33880 +1.7 11.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS15490 +1.7 6.0 coproporphyrinogen III oxidase compare
BPHYT_RS33875 +1.7 6.3 tryptophan synthase subunit alpha compare
BPHYT_RS20280 +1.7 2.8 hypothetical protein compare
BPHYT_RS13705 +1.6 4.6 chorismate synthase compare
BPHYT_RS14910 +1.6 8.3 chorismate mutase compare
BPHYT_RS20260 +1.6 11.7 cytochrome C551 peroxidase compare
BPHYT_RS20265 +1.6 11.3 amino acid adenylation protein compare
BPHYT_RS05225 +1.6 9.3 phosphoenolpyruvate carboxylase compare
BPHYT_RS21725 +1.6 0.8 taurine ABC transporter substrate-binding protein compare
BPHYT_RS33865 +1.5 7.8 tryptophan synthase alpha chain compare
BPHYT_RS07900 +1.5 2.3 hypothetical protein compare
BPHYT_RS06510 +1.5 1.6 DeoR faimly transcriptional regulator compare
BPHYT_RS20095 +1.4 1.0 transcriptional regulator compare
BPHYT_RS30795 +1.4 2.0 short-chain dehydrogenase compare
BPHYT_RS02755 +1.4 1.8 cyd operon protein YbgT compare
BPHYT_RS17405 +1.4 1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS13540 +1.4 7.1 LysR family transcriptional regulator compare
BPHYT_RS23230 +1.4 0.8 histidine kinase compare
BPHYT_RS33870 +1.4 5.6 DNA methylase N-4 compare
BPHYT_RS23460 +1.4 1.2 AraC family transcriptional regulator compare
BPHYT_RS16335 +1.4 2.0 membrane protein compare
BPHYT_RS33030 +1.4 1.3 hypothetical protein compare
BPHYT_RS17680 +1.4 3.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS03470 +1.4 5.8 LysR family transcriptional regulator compare
BPHYT_RS06045 +1.3 6.1 transaldolase compare
BPHYT_RS19260 +1.3 1.5 hypothetical protein compare
BPHYT_RS17685 +1.3 6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS01115 +1.3 3.0 hypothetical protein compare
BPHYT_RS17640 +1.3 2.6 2-alkenal reductase compare
BPHYT_RS13565 +1.2 3.0 bacterioferritin compare
BPHYT_RS25980 +1.2 1.2 urea carboxylase compare
BPHYT_RS22040 +1.2 2.2 peptide ABC transporter permease compare
BPHYT_RS26685 +1.2 1.1 precorrin-8X methylmutase compare
BPHYT_RS26390 +1.2 1.4 antibiotic resistance protein compare
BPHYT_RS11405 +1.2 2.0 hypothetical protein compare
BPHYT_RS06930 +1.2 3.1 hypothetical protein compare
BPHYT_RS28605 +1.2 2.3 NADPH-dependent FMN reductase compare
BPHYT_RS28535 +1.2 1.3 response regulator receiver compare
BPHYT_RS20275 +1.2 5.3 TonB-denpendent receptor compare
BPHYT_RS11805 +1.1 1.6 hypothetical protein compare
BPHYT_RS16975 +1.1 4.4 shikimate 5-dehydrogenase compare
BPHYT_RS15550 +1.1 3.0 transcriptional regulator compare
BPHYT_RS10260 +1.1 1.9 hypothetical protein compare
BPHYT_RS17675 +1.1 2.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS01630 +1.1 2.4 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS03620 +1.1 6.3 poly(A) polymerase compare
BPHYT_RS26045 +1.1 3.9 ABC transporter permease compare
BPHYT_RS04945 +1.1 8.9 membrane protein compare
BPHYT_RS05970 +1.1 3.2 glyoxalase compare
BPHYT_RS05255 +1.1 2.1 phage abortive infection protein compare
BPHYT_RS07705 +1.1 1.9 arginine succinyltransferase compare
BPHYT_RS23445 +1.0 1.4 hexuronate transporter compare
BPHYT_RS12060 +1.0 1.7 hypothetical protein compare
BPHYT_RS12230 +1.0 3.0 hypothetical protein compare
BPHYT_RS03625 +1.0 5.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS09155 +1.0 3.1 3-ketoacyl-ACP reductase compare
BPHYT_RS30635 +1.0 1.6 D-aminopeptidase compare
BPHYT_RS23350 +1.0 1.9 NAD-dependent epimerase/dehydratase compare
BPHYT_RS20215 +1.0 1.8 RNA polymerase sigma 70 compare
BPHYT_RS05585 +1.0 2.0 hypothetical protein compare
BPHYT_RS04950 +1.0 6.9 hypothetical protein compare
BPHYT_RS28440 +1.0 1.4 heat shock Hsp20 compare
BPHYT_RS09280 +1.0 1.1 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS34560 +1.0 2.1 hypothetical protein compare
BPHYT_RS17725 +1.0 3.9 BolA family transcriptional regulator compare
BPHYT_RS17855 +1.0 6.4 glutamate synthase compare
BPHYT_RS11050 +1.0 1.6 molecular chaperone compare
BPHYT_RS35120 +1.0 1.7 hypothetical protein compare
BPHYT_RS05065 +1.0 1.8 DNA mismatch repair protein MutS compare
BPHYT_RS36400 +1.0 1.2 hypothetical protein compare
BPHYT_RS16735 +0.9 3.5 phosphogluconate dehydratase compare
BPHYT_RS19935 +0.9 2.1 protein serine/threonine phosphatase compare
BPHYT_RS19125 +0.9 3.2 short-chain dehydrogenase compare
BPHYT_RS24350 +0.9 1.9 hypothetical protein compare
BPHYT_RS36230 +0.9 1.2 hypothetical protein compare
BPHYT_RS26670 +0.9 2.1 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS18765 +0.9 3.8 flagellar biosynthesis protein FliS compare
BPHYT_RS30990 +0.9 1.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS33965 +0.9 1.1 methylcitrate synthase compare
BPHYT_RS03015 +0.9 0.8 aldolase compare
BPHYT_RS14340 +0.9 5.4 Fis family transcriptional regulator compare
BPHYT_RS29630 +0.9 1.7 SAM-dependent methyltransferase compare
BPHYT_RS34680 +0.9 3.2 hypothetical protein compare
BPHYT_RS30865 +0.9 1.7 sugar ABC transporter ATP-binding protein compare
BPHYT_RS09395 +0.9 2.1 ABC transporter permease compare
BPHYT_RS15515 +0.9 1.0 D-aminopeptidase compare
BPHYT_RS24580 +0.9 1.1 hypothetical protein compare
BPHYT_RS20630 +0.9 1.6 patatin compare
BPHYT_RS00815 +0.9 1.1 hypothetical protein compare
BPHYT_RS15890 +0.9 1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS13885 +0.9 1.3 myo-inositol 2-dehydrogenase compare
BPHYT_RS08135 +0.9 0.8 hypothetical protein compare
BPHYT_RS23760 +0.9 2.0 phosphonate ABC transporter permease compare
BPHYT_RS17670 +0.9 2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS01485 +0.9 0.8 histidine kinase compare
BPHYT_RS07925 +0.9 1.7 glutamine amidotransferase compare
BPHYT_RS13320 +0.9 1.0 allantoate amidohydrolase compare
BPHYT_RS02505 +0.9 1.6 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS03945 +0.9 1.2 hypothetical protein compare
BPHYT_RS35935 +0.8 2.3 hypothetical protein compare
BPHYT_RS17920 +0.8 1.0 protein CyaY compare
BPHYT_RS29605 +0.8 2.2 hypothetical protein compare
BPHYT_RS21805 +0.8 1.7 transcriptional regulator compare
BPHYT_RS09115 +0.8 1.2 RNA polymerase sigma factor RpoS compare
BPHYT_RS35615 +0.8 1.9 hypothetical protein compare
BPHYT_RS12215 +0.8 2.1 glutathione peroxidase compare
BPHYT_RS05530 +0.8 1.3 hypothetical protein compare
BPHYT_RS30400 +0.8 2.1 amidohydrolase compare
BPHYT_RS27860 +0.8 1.6 membrane protein compare
BPHYT_RS25235 +0.8 2.1 LysR family transcriptional regulator compare
BPHYT_RS22420 +0.8 1.1 membrane protein compare
BPHYT_RS22030 +0.8 1.4 peptide ABC transporter ATP-binding protein compare
BPHYT_RS23205 +0.8 2.0 alkylhydroperoxidase compare
BPHYT_RS02425 +0.8 1.7 hypothetical protein compare
BPHYT_RS10435 +0.8 2.2 ThiJ/PfpI domain-containing protein compare
BPHYT_RS30915 +0.8 1.5 hypothetical protein compare
BPHYT_RS17890 +0.8 0.7 shikimate kinase compare
BPHYT_RS29800 +0.8 1.4 hypothetical protein compare
BPHYT_RS31400 +0.8 1.0 methyl-accepting chemotaxis protein compare
BPHYT_RS17240 +0.8 0.9 cell division protein FtsW compare
BPHYT_RS08190 +0.8 1.3 type II secretion system protein compare
BPHYT_RS23065 +0.8 2.4 MFS transporter compare
BPHYT_RS11100 +0.8 1.6 methyltransferase compare
BPHYT_RS07055 +0.8 1.0 sulfotransferase compare
BPHYT_RS23910 +0.8 1.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS17265 +0.8 0.9 cell division protein compare
BPHYT_RS32750 +0.8 1.1 lipoprotein compare
BPHYT_RS02770 +0.8 1.7 membrane protein compare
BPHYT_RS20505 +0.8 0.9 carboxymethylenebutenolidase compare
BPHYT_RS25000 +0.8 2.3 MFS transporter compare
BPHYT_RS24690 +0.8 4.4 ionic transporter y4hA compare
BPHYT_RS29540 +0.8 0.9 aldolase compare
BPHYT_RS22780 +0.8 2.2 sugar ABC transporter permease compare
BPHYT_RS10670 +0.8 1.1 catechol 1,2-dioxygenase compare
BPHYT_RS36540 +0.8 1.5 hypothetical protein compare
BPHYT_RS30415 +0.8 1.2 AraC family transcriptional regulator compare
BPHYT_RS25585 +0.8 1.3 membrane protein compare
BPHYT_RS30610 +0.8 1.3 major facilitator transporter compare
BPHYT_RS17050 +0.8 1.5 hypothetical protein compare
BPHYT_RS29640 +0.8 2.0 NAD-dependent deacetylase compare
BPHYT_RS10115 +0.8 1.4 hypothetical protein compare
BPHYT_RS23615 +0.8 1.5 XRE family transcriptional regulator compare
BPHYT_RS10465 +0.8 1.8 hypothetical protein compare
BPHYT_RS29175 +0.8 1.0 ABC transporter ATP-binding protein compare
BPHYT_RS24170 +0.8 1.7 gluconolactonase compare
BPHYT_RS04910 +0.8 1.0 phenylacetic acid degradation protein compare
BPHYT_RS26690 +0.8 2.3 precorrin-2 C20-methyltransferase compare
BPHYT_RS16985 +0.8 3.1 esterase compare
BPHYT_RS14895 +0.8 1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS25470 +0.8 1.3 alkylhydroperoxidase compare
BPHYT_RS21635 +0.8 2.3 extradiol dioxygenase compare
BPHYT_RS31300 +0.8 2.2 Crp/Fnr family transcriptional regulator compare
BPHYT_RS01790 +0.7 4.9 LuxR family transcriptional regulator compare
BPHYT_RS02010 +0.7 1.1 copper homeostasis protein CutC compare
BPHYT_RS27345 +0.7 2.0 aldehyde dehydrogenase compare
BPHYT_RS17825 +0.7 1.9 transcriptional regulator compare
BPHYT_RS17185 +0.7 3.6 N-acetylglutamate synthase compare
BPHYT_RS32395 +0.7 0.7 hypothetical protein compare
BPHYT_RS36320 +0.7 1.4 type IV secretion system family protein compare
BPHYT_RS32540 +0.7 1.6 hypothetical protein compare
BPHYT_RS36515 +0.7 1.9 hypothetical protein compare
BPHYT_RS11625 +0.7 2.6 cupin compare
BPHYT_RS30920 +0.7 2.4 hypothetical protein compare
BPHYT_RS28910 +0.7 0.6 diguanylate phosphodiesterase compare
BPHYT_RS23510 +0.7 1.5 AMP-dependent synthetase compare
BPHYT_RS25450 +0.7 1.0 membrane protein compare
BPHYT_RS05515 +0.7 1.3 hypothetical protein compare
BPHYT_RS19920 +0.7 0.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS24600 +0.7 2.1 (2Fe-2S)-binding protein compare
BPHYT_RS01795 +0.7 4.2 histidine kinase compare
BPHYT_RS11235 +0.7 0.7 hypothetical protein compare
BPHYT_RS28595 +0.7 0.6 glyoxalase compare
BPHYT_RS11255 +0.7 1.6 AsnC family transcriptional regulator compare
BPHYT_RS06900 +0.7 2.6 aspartate aminotransferase compare
BPHYT_RS22100 +0.7 2.1 ribonuclease BN compare
BPHYT_RS22390 +0.7 1.8 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS06385 +0.7 1.6 ribosomal RNA large subunit methyltransferase H compare
BPHYT_RS22815 +0.7 1.4 TonB-denpendent receptor compare
BPHYT_RS36590 +0.7 0.9 hypothetical protein compare
BPHYT_RS06290 +0.7 1.6 hypothetical protein compare
BPHYT_RS05410 +0.7 2.1 beta-lactamase compare
BPHYT_RS35125 +0.7 2.5 glycogen-debranching protein compare


Specific Phenotypes

For 9 genes in this experiment