Experiment set21IT011 for Burkholderia phytofirmans PsJN

Parafilmed volatile agar plate with no fungus

Group: agar plate interaction control
Media: LB
Culturing: BFirm_ML3a, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 1-Feb-22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 9 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Glycerol and Glycerol-3-phosphate Uptake and Utilization	3
Glycerolipid and Glycerophospholipid Metabolism in Bacteria	2
Siderophore Pyoverdine	2
Experimental tye	1
Glycerol fermenation to 1,3-propanediol	1
Heme and Siroheme Biosynthesis	1
Iron acquisition in Vibrio	1
MLST	1
Respiratory dehydrogenases 1	1
Transport of Iron	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycerolipid metabolism
• Glycerophospholipid metabolism
• Porphyrin and chlorophyll metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
glycerol degradation I	3	2	2
glycerol-3-phosphate to cytochrome bo oxidase electron transfer	2	2	1
glycerol-3-phosphate shuttle	2	2	1
glycerophosphodiester degradation	2	2	1
glycerol and glycerophosphodiester degradation	4	3	2
glycerol-3-phosphate to hydrogen peroxide electron transport	2	1	1
nitrate reduction IX (dissimilatory)	2	1	1
glycerol 3-phosphate to cytochrome aa3 oxidase electron transfer	2	1	1
glycerol-3-phosphate to fumarate electron transfer	2	1	1
sn-glycerol 3-phosphate anaerobic respiration	3	1	1
heme b biosynthesis II (oxygen-independent)	4	3	1
superpathway of heme b biosynthesis from uroporphyrinogen-III	6	4	1
erythritol degradation I	6	1	1
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)	9	3	1
superpathway of bacteriochlorophyll a biosynthesis	26	6	1