Experiment set21IT009 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
BPHYT_RS08975 -5.1 -4.4 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS17920 -4.6 -1.1 protein CyaY compare
BPHYT_RS20235 -4.4 -5.7 iron ABC transporter compare
BPHYT_RS36385 -4.4 -1.1 TetR family transcriptional regulator compare
BPHYT_RS33460 -4.3 -1.0 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS33920 -4.2 -5.0 type II citrate synthase compare
BPHYT_RS15620 -4.0 -3.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS14855 -4.0 -1.7 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS33765 -3.9 -0.9 membrane protein compare
BPHYT_RS16710 -3.9 -0.9 LysR family transcriptional regulator compare
BPHYT_RS09515 -3.6 -3.4 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS14190 -3.6 -6.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS08960 -3.6 -1.5 threonine synthase compare
BPHYT_RS04965 -3.3 -6.0 ATP-binding protein compare
BPHYT_RS24500 -3.3 -1.1 histidine kinase compare
BPHYT_RS03480 -3.3 -8.2 ferritin compare
BPHYT_RS32240 -3.2 -1.1 chromosome replication initiation inhibitor protein compare
BPHYT_RS30610 -3.1 -2.4 major facilitator transporter compare
BPHYT_RS09620 -3.1 -2.9 aminodeoxychorismate lyase compare
BPHYT_RS13160 -3.1 -1.3 membrane protein compare
BPHYT_RS17945 -3.0 -1.8 cytochrome C biogenesis protein compare
BPHYT_RS16245 -2.9 -4.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS12845 -2.9 -13.0 ATPase compare
BPHYT_RS22765 -2.9 -3.3 beta-galactosidase compare
BPHYT_RS35720 -2.9 -5.5 phosphopantetheinyl transferase compare
BPHYT_RS31910 -2.9 -1.2 hypothetical protein compare
BPHYT_RS06350 -2.9 -2.0 chemotaxis protein CheY compare
BPHYT_RS35205 -2.9 -2.0 hypothetical protein compare
BPHYT_RS27720 -2.8 -1.2 hypothetical protein compare
BPHYT_RS02975 -2.8 -1.8 membrane protein compare
BPHYT_RS15710 -2.8 -1.2 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06685 -2.7 -1.3 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS05895 -2.7 -1.3 hypothetical protein compare
BPHYT_RS14195 -2.7 -1.9 carbamoyl phosphate synthase small subunit compare
BPHYT_RS09850 -2.7 -1.6 molybdopterin oxidoreductase compare
BPHYT_RS02525 -2.6 -5.9 membrane protein compare
BPHYT_RS09330 -2.6 -8.6 phytoene synthase compare
BPHYT_RS09480 -2.6 -0.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS04285 -2.6 -1.0 rhamnosyltransferase compare
BPHYT_RS16255 -2.6 -3.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS28705 -2.5 -1.1 IclR family transcriptional regulator compare
BPHYT_RS20245 -2.5 -3.7 iron ABC transporter substrate-binding protein compare
BPHYT_RS16320 -2.5 -3.3 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS08850 -2.5 -1.2 transcriptional regulator compare
BPHYT_RS23355 -2.5 -2.3 membrane protein compare
BPHYT_RS31205 -2.4 -2.0 peptide ABC transporter ATP-binding protein compare
BPHYT_RS02965 -2.4 -2.2 membrane protein compare
BPHYT_RS17630 -2.4 -5.0 ubiquinol-cytochrome C reductase compare
BPHYT_RS18340 -2.4 -1.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS30745 -2.4 -1.8 hypothetical protein compare
BPHYT_RS25980 -2.3 -0.8 urea carboxylase compare
BPHYT_RS02865 -2.3 -1.6 hypothetical protein compare
BPHYT_RS16345 -2.3 -3.3 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS05365 -2.3 -1.0 3-ketoacyl-ACP reductase compare
BPHYT_RS04370 -2.3 -1.0 glycosyl transferase compare
BPHYT_RS28930 -2.3 -1.0 chromosome partitioning protein ParA compare
BPHYT_RS06400 -2.3 -3.9 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS12465 -2.3 -2.2 inositol monophosphatase compare
BPHYT_RS11655 -2.3 -1.4 chromosome partitioning protein ParB compare
BPHYT_RS20845 -2.2 -1.2 peroxidase compare
BPHYT_RS18705 -2.2 -1.4 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS33610 -2.2 -1.1 DNA polymerase I compare
BPHYT_RS10095 -2.2 -1.1 integrase compare
BPHYT_RS34565 -2.2 -1.8 chemotaxis protein compare
BPHYT_RS19335 -2.2 -3.8 hypothetical protein compare
BPHYT_RS14865 -2.1 -1.5 UDP-glucose 6-dehydrogenase compare
BPHYT_RS16340 -2.1 -4.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS10165 -2.1 -1.4 transcriptional regulator compare
BPHYT_RS26390 -2.1 -0.9 antibiotic resistance protein compare
BPHYT_RS16175 -2.0 -1.8 hemolysin D compare
BPHYT_RS30750 -2.0 -1.3 GntR family transcriptional regulator compare
BPHYT_RS22910 -2.0 -0.8 hypothetical protein compare
BPHYT_RS26840 -2.0 -2.9 NADH dehydrogenase compare
BPHYT_RS30265 -2.0 -0.9 hypothetical protein compare
BPHYT_RS34445 -1.9 -2.5 GntR family transcriptional regulator compare
BPHYT_RS18635 -1.9 -1.5 LamB/YcsF family protein compare
BPHYT_RS06075 -1.9 -4.3 hypothetical protein compare
BPHYT_RS13130 -1.9 -1.2 metallophosphatase compare
BPHYT_RS23455 -1.9 -0.8 phosphorylase compare
BPHYT_RS08965 -1.9 -3.5 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS06405 -1.9 -5.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS20665 -1.9 -0.9 LysR family transcriptional regulator compare
BPHYT_RS02570 -1.9 -3.0 phosphocarrier protein HPr compare
BPHYT_RS08340 -1.9 -0.4 chemotaxis protein CheY compare
BPHYT_RS06600 -1.9 -1.4 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS06990 -1.9 -0.8 membrane protein compare
BPHYT_RS02860 -1.9 -0.6 membrane protein compare
BPHYT_RS18250 -1.9 -4.8 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS29300 -1.9 -1.8 endoribonuclease L-PSP compare
BPHYT_RS04385 -1.8 -2.0 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS01620 -1.8 -6.1 sensor histidine kinase compare
BPHYT_RS17085 -1.8 -5.9 hypoxanthine phosphoribosyltransferase compare
BPHYT_RS01340 -1.8 -2.3 ChrB domain-containing protein compare
BPHYT_RS11555 -1.8 -1.9 allantoinase compare
BPHYT_RS25005 -1.8 -1.1 FMN reductase compare
BPHYT_RS33615 -1.8 -2.3 decarboxylase compare
BPHYT_RS18630 -1.8 -2.9 allophanate hydrolase compare
BPHYT_RS03640 -1.8 -2.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS27495 -1.8 -0.7 hypothetical protein compare
BPHYT_RS33360 -1.8 -1.6 formyl-CoA transferase compare
BPHYT_RS04720 -1.7 -4.8 transcriptional regulator compare
BPHYT_RS04335 -1.7 -1.2 membrane protein compare
BPHYT_RS36525 -1.7 -3.2 hypothetical protein compare
BPHYT_RS28595 -1.7 -1.0 glyoxalase compare
BPHYT_RS13605 -1.7 -0.7 tRNA-Pro compare
BPHYT_RS10470 -1.7 -1.6 hypothetical protein compare
BPHYT_RS17035 -1.7 -2.2 sugar kinase compare
BPHYT_RS18260 -1.7 -4.4 phenylacetic acid degradation protein compare
BPHYT_RS34470 -1.7 -2.9 ABC transporter compare
BPHYT_RS08525 -1.6 -0.8 SAM-dependent methyltransferase compare
BPHYT_RS08135 -1.6 -0.8 hypothetical protein compare
BPHYT_RS12840 -1.6 -2.8 pyruvate dehydrogenase compare
BPHYT_RS09160 -1.6 -4.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS02010 -1.6 -1.1 copper homeostasis protein CutC compare
BPHYT_RS24955 -1.6 -1.3 cytochrome C peroxidase compare
BPHYT_RS33580 -1.6 -3.2 geranyltranstransferase compare
BPHYT_RS04455 -1.6 -0.9 glycosyl transferase compare
BPHYT_RS25335 -1.6 -0.8 hypothetical protein compare
BPHYT_RS17625 -1.6 -8.6 cytochrome B compare
BPHYT_RS33685 -1.6 -4.1 molybdate ABC transporter substrate-binding protein compare
BPHYT_RS34805 -1.6 -4.1 ABC transporter compare
BPHYT_RS12725 -1.6 -8.1 regulator compare
BPHYT_RS08410 -1.6 -0.8 dehydrogenase compare
BPHYT_RS17520 -1.6 -2.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS25270 -1.6 -1.7 multidrug MFS transporter compare
BPHYT_RS06375 -1.6 -2.8 ribonuclease compare
BPHYT_RS17620 -1.6 -5.5 cytochrome C compare
BPHYT_RS04290 -1.6 -1.2 glycosyl transferase family 2 compare
BPHYT_RS33845 -1.6 -2.0 bacteriocin production protein compare
BPHYT_RS24350 -1.5 -1.6 hypothetical protein compare
BPHYT_RS33535 -1.5 -8.9 RNA polymerase sigma factor RpoD compare
BPHYT_RS31440 -1.5 -1.4 hypothetical protein compare
BPHYT_RS25845 -1.5 -0.7 RND transporter MFP subunit compare
BPHYT_RS21335 -1.5 -1.6 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS02135 -1.5 -1.2 glyoxylate reductase compare
BPHYT_RS14490 -1.5 -5.7 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS12925 -1.5 -0.7 exodeoxyribonuclease III compare
BPHYT_RS27060 -1.5 -1.2 photosystem reaction center subunit H compare
BPHYT_RS21110 -1.5 -1.8 FO synthase compare
BPHYT_RS16475 -1.5 -1.8 hypothetical protein compare
BPHYT_RS35735 -1.5 -0.6 nitroreductase compare
BPHYT_RS17955 -1.4 -4.1 cytochrome C compare
BPHYT_RS17860 -1.4 -2.5 transposase compare
BPHYT_RS28370 -1.4 -0.8 peroxidase compare
BPHYT_RS34085 -1.4 -1.4 polyamine ABC transporter permease compare
BPHYT_RS18320 -1.4 -5.8 orotate phosphoribosyltransferase compare
BPHYT_RS34645 -1.4 -3.5 hypothetical protein compare
BPHYT_RS12990 -1.4 -0.9 iron transporter compare
BPHYT_RS16085 -1.4 -3.1 DeoR faimly transcriptional regulator compare
BPHYT_RS14140 -1.4 -2.5 phosphate transporter permease subunit PstC compare
BPHYT_RS14735 -1.4 -0.8 hypothetical protein compare
BPHYT_RS07960 -1.4 -1.2 hypothetical protein compare
BPHYT_RS18265 -1.4 -2.1 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS12785 -1.4 -2.1 Rrf2 family transcriptional regulator compare
BPHYT_RS04955 -1.4 -1.2 methionyl-tRNA synthetase compare
BPHYT_RS28575 -1.4 -0.7 transcriptional regulator compare
BPHYT_RS11705 -1.4 -0.6 hypothetical protein compare
BPHYT_RS01630 -1.4 -1.4 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS28300 -1.4 -0.9 histone nucleoid-structuring protein H-NS compare
BPHYT_RS33645 -1.4 -4.0 homoserine kinase compare
BPHYT_RS33630 -1.4 -1.3 chromate transporter compare
BPHYT_RS32335 -1.4 -1.2 AsnC family transcriptional regulator compare
BPHYT_RS03570 -1.3 -4.1 heat-inducible transcription repressor HrcA compare
BPHYT_RS27690 -1.3 -1.3 carbamate kinase compare
BPHYT_RS21150 -1.3 -1.4 NAD(P) transhydrogenase subunit alpha compare
BPHYT_RS26855 -1.3 -1.8 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS23570 -1.3 -2.9 chemotaxis protein CheY compare
BPHYT_RS08125 -1.3 -4.8 ATPase compare
BPHYT_RS03215 -1.3 -1.6 TetR family transcriptional regulator compare
BPHYT_RS16905 -1.3 -2.9 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06325 -1.3 -3.3 ATPase compare
BPHYT_RS14505 -1.3 -1.3 membrane protein compare
BPHYT_RS14715 -1.3 -3.1 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS11020 -1.3 -1.6 transporter compare
BPHYT_RS16470 -1.3 -2.5 DeoR faimly transcriptional regulator compare
BPHYT_RS13200 -1.3 -1.1 molybdopterin binding oxidoreductase compare
BPHYT_RS16645 -1.3 -2.9 anhydro-N-acetylmuramic acid kinase compare
BPHYT_RS04890 -1.3 -0.6 cobalamin biosynthesis protein CobD compare
BPHYT_RS17975 -1.3 -1.8 cytochrome C biogenesis protein compare
BPHYT_RS01530 -1.3 -1.8 penicillin-binding protein 2 compare
BPHYT_RS02590 -1.3 -3.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS29870 -1.3 -1.1 2-dehydropantoate 2-reductase compare
BPHYT_RS18270 -1.3 -4.3 phenylacetic acid degradation protein compare
BPHYT_RS09825 -1.3 -0.8 Fe-S protein compare
BPHYT_RS35955 -1.3 -1.0 hypothetical protein compare
BPHYT_RS25970 -1.3 -0.6 urea amidolyase compare
BPHYT_RS04340 -1.3 -2.3 hypothetical protein compare
BPHYT_RS16740 -1.3 -4.4 transcriptional regulator compare
BPHYT_RS13610 -1.2 -2.5 MerR family transcriptional regulator compare
BPHYT_RS06550 -1.2 -1.3 acetolactate synthase compare
BPHYT_RS02595 -1.2 -0.8 sulfurtransferase compare
BPHYT_RS15320 -1.2 -1.4 hypothetical protein compare
BPHYT_RS02005 -1.2 -1.2 diguanylate phosphodiesterase compare
BPHYT_RS13935 -1.2 -1.0 mannosyltransferase compare
BPHYT_RS10270 -1.2 -2.1 D-amino acid dehydrogenase compare
BPHYT_RS33695 -1.2 -2.3 molybdenum ABC transporter ATPase compare
BPHYT_RS30720 -1.2 -1.1 hypothetical protein compare
BPHYT_RS08245 -1.2 -3.7 anti-sigma factor compare
BPHYT_RS04630 -1.2 -2.0 amino acid ABC transporter permease compare
BPHYT_RS33840 -1.2 -4.0 amidophosphoribosyltransferase compare


Specific Phenotypes

For 2 genes in this experiment