Experiment set21IT008 for Burkholderia phytofirmans PsJN

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
BPHYT_RS03090 -5.3 -2.5 hypothetical protein compare
BPHYT_RS16710 -4.0 -1.1 LysR family transcriptional regulator compare
BPHYT_RS08960 -3.9 -1.9 threonine synthase compare
BPHYT_RS12615 -3.9 -1.5 dihydrodipicolinate synthase compare
BPHYT_RS35720 -3.7 -7.5 phosphopantetheinyl transferase compare
BPHYT_RS03640 -3.6 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06190 -3.5 -4.1 heptosyltransferase compare
BPHYT_RS03480 -3.2 -11.2 ferritin compare
BPHYT_RS04965 -3.1 -7.2 ATP-binding protein compare
BPHYT_RS15710 -3.0 -1.4 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06530 -3.0 -1.6 membrane protein compare
BPHYT_RS08850 -2.8 -1.6 transcriptional regulator compare
BPHYT_RS02570 -2.7 -7.3 phosphocarrier protein HPr compare
BPHYT_RS20245 -2.7 -6.1 iron ABC transporter substrate-binding protein compare
BPHYT_RS17945 -2.7 -2.2 cytochrome C biogenesis protein compare
BPHYT_RS14190 -2.7 -8.3 carbamoyl phosphate synthase large subunit compare
BPHYT_RS14245 -2.7 -1.8 membrane protein compare
BPHYT_RS16245 -2.6 -4.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16255 -2.6 -4.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS33920 -2.6 -7.3 type II citrate synthase compare
BPHYT_RS17240 -2.6 -1.2 cell division protein FtsW compare
BPHYT_RS04095 -2.6 -1.4 SAM-dependent methyltransferase PhcB compare
BPHYT_RS09330 -2.6 -8.7 phytoene synthase compare
BPHYT_RS12845 -2.5 -13.2 ATPase compare
BPHYT_RS26840 -2.5 -6.2 NADH dehydrogenase compare
BPHYT_RS06400 -2.5 -4.5 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS15620 -2.5 -2.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS20235 -2.4 -5.1 iron ABC transporter compare
BPHYT_RS08975 -2.4 -4.0 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS33685 -2.4 -6.6 molybdate ABC transporter substrate-binding protein compare
BPHYT_RS26855 -2.3 -2.3 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS12840 -2.3 -3.4 pyruvate dehydrogenase compare
BPHYT_RS34780 -2.3 -4.2 phytoene synthase compare
BPHYT_RS30140 -2.3 -1.5 3-methylitaconate isomerase compare
BPHYT_RS12985 -2.2 -1.6 amino acid acetyltransferase compare
BPHYT_RS27295 -2.2 -1.8 hypothetical protein compare
BPHYT_RS14060 -2.2 -1.9 peptidase M23 compare
BPHYT_RS10670 -2.2 -1.4 catechol 1,2-dioxygenase compare
BPHYT_RS09515 -2.1 -3.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS27495 -2.1 -1.0 hypothetical protein compare
BPHYT_RS09620 -2.1 -3.0 aminodeoxychorismate lyase compare
BPHYT_RS33535 -2.1 -15.1 RNA polymerase sigma factor RpoD compare
BPHYT_RS10650 -2.0 -1.4 membrane protein compare
BPHYT_RS06410 -2.0 -3.1 transcriptional regulator compare
BPHYT_RS14490 -2.0 -8.8 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS16340 -2.0 -4.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS14715 -2.0 -5.8 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS33655 -2.0 -4.8 MarR family transcriptional regulator compare
BPHYT_RS02525 -2.0 -7.1 membrane protein compare
BPHYT_RS02965 -2.0 -3.3 membrane protein compare
BPHYT_RS09650 -2.0 -1.5 hypothetical protein compare
BPHYT_RS09480 -1.9 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS29855 -1.9 -1.0 protein-tyrosine-phosphatase compare
BPHYT_RS31400 -1.9 -1.2 methyl-accepting chemotaxis protein compare
BPHYT_RS17520 -1.9 -4.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS21625 -1.9 -1.1 LysR family transcriptional regulator compare
BPHYT_RS33580 -1.8 -4.6 geranyltranstransferase compare
BPHYT_RS08965 -1.8 -3.7 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS20695 -1.8 -1.9 ribokinase compare
BPHYT_RS35735 -1.8 -1.5 nitroreductase compare
BPHYT_RS36525 -1.8 -3.7 hypothetical protein compare
BPHYT_RS02865 -1.8 -2.2 hypothetical protein compare
BPHYT_RS23650 -1.8 -1.0 hypothetical protein compare
BPHYT_RS04290 -1.8 -1.6 glycosyl transferase family 2 compare
BPHYT_RS28705 -1.8 -1.2 IclR family transcriptional regulator compare
BPHYT_RS05320 -1.8 -1.3 beta-lactamase compare
BPHYT_RS33845 -1.8 -2.4 bacteriocin production protein compare
BPHYT_RS06075 -1.8 -4.7 hypothetical protein compare
BPHYT_RS34810 -1.8 -2.5 RND transporter compare
BPHYT_RS06320 -1.8 -2.2 chemotaxis protein CheY compare
BPHYT_RS05285 -1.8 -1.3 hypothetical protein compare
BPHYT_RS05980 -1.7 -5.2 heat shock protein 90 compare
BPHYT_RS06685 -1.7 -1.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS16470 -1.7 -4.6 DeoR faimly transcriptional regulator compare
BPHYT_RS03570 -1.7 -4.1 heat-inducible transcription repressor HrcA compare
BPHYT_RS28690 -1.7 -2.6 diguanylate phosphodiesterase compare
BPHYT_RS12465 -1.7 -2.0 inositol monophosphatase compare
BPHYT_RS11705 -1.7 -1.4 hypothetical protein compare
BPHYT_RS16835 -1.7 -5.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17625 -1.7 -10.5 cytochrome B compare
BPHYT_RS14140 -1.7 -3.0 phosphate transporter permease subunit PstC compare
BPHYT_RS16320 -1.7 -4.4 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS10095 -1.7 -2.0 integrase compare
BPHYT_RS11360 -1.7 -1.7 hypothetical protein compare
BPHYT_RS24315 -1.6 -1.6 phosphoribosyltransferase compare
BPHYT_RS18260 -1.6 -6.0 phenylacetic acid degradation protein compare
BPHYT_RS13160 -1.6 -1.3 membrane protein compare
BPHYT_RS01620 -1.6 -6.5 sensor histidine kinase compare
BPHYT_RS17620 -1.6 -6.8 cytochrome C compare
BPHYT_RS25470 -1.6 -1.5 alkylhydroperoxidase compare
BPHYT_RS18250 -1.6 -6.7 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS33695 -1.6 -2.0 molybdenum ABC transporter ATPase compare
BPHYT_RS33690 -1.6 -1.0 molybdate ABC transporter permease compare
BPHYT_RS25935 -1.6 -2.9 type III secretion protein compare
BPHYT_RS18255 -1.5 -1.9 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS17630 -1.5 -4.4 ubiquinol-cytochrome C reductase compare
BPHYT_RS12990 -1.5 -1.8 iron transporter compare
BPHYT_RS13605 -1.5 -0.8 tRNA-Pro compare
BPHYT_RS17030 -1.5 -1.1 lipid hydroperoxide peroxidase compare
BPHYT_RS16880 -1.5 -1.1 malic enzyme compare
BPHYT_RS06175 -1.5 -4.3 LPS biosynthesis compare
BPHYT_RS02040 -1.5 -2.2 hypothetical protein compare
BPHYT_RS22910 -1.5 -0.9 hypothetical protein compare
BPHYT_RS18265 -1.5 -2.4 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS04370 -1.5 -1.0 glycosyl transferase compare
BPHYT_RS04455 -1.5 -1.1 glycosyl transferase compare
BPHYT_RS16270 -1.5 -2.7 phosphoglycerate kinase compare
BPHYT_RS16840 -1.5 -2.1 transketolase compare
BPHYT_RS18630 -1.5 -2.5 allophanate hydrolase compare
BPHYT_RS17955 -1.5 -5.8 cytochrome C compare
BPHYT_RS25055 -1.5 -1.5 MFS transporter compare
BPHYT_RS15075 -1.5 -1.1 dihydrokaempferol 4-reductase compare
BPHYT_RS03475 -1.5 -5.2 catalase compare
BPHYT_RS02860 -1.5 -0.7 membrane protein compare
BPHYT_RS06610 -1.4 -0.9 triosephosphate isomerase compare
BPHYT_RS09825 -1.4 -0.9 Fe-S protein compare
BPHYT_RS04335 -1.4 -1.4 membrane protein compare
BPHYT_RS12925 -1.4 -0.9 exodeoxyribonuclease III compare
BPHYT_RS13200 -1.4 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS23455 -1.4 -0.8 phosphorylase compare
BPHYT_RS12900 -1.4 -1.8 transposase compare
BPHYT_RS35885 -1.4 -2.7 hypothetical protein compare
BPHYT_RS33850 -1.4 -1.2 sporulation protein compare
BPHYT_RS14400 -1.4 -2.2 anti-sigma factor compare
BPHYT_RS28600 -1.4 -1.4 ArsC family transcriptional regulator compare
BPHYT_RS18270 -1.4 -5.8 phenylacetic acid degradation protein compare
BPHYT_RS09500 -1.4 -4.6 glucose-6-phosphate isomerase compare
BPHYT_RS09105 -1.4 -4.9 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS28840 -1.4 -2.7 oxidoreductase compare
BPHYT_RS17085 -1.4 -4.1 hypoxanthine phosphoribosyltransferase compare
BPHYT_RS02590 -1.4 -5.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS05610 -1.4 -5.8 DNA-cytosine methyltransferase compare
BPHYT_RS17075 -1.4 -2.3 ABC transporter permease compare
BPHYT_RS06710 -1.4 -1.0 hypothetical protein compare
BPHYT_RS06405 -1.4 -4.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS01340 -1.4 -2.4 ChrB domain-containing protein compare
BPHYT_RS14855 -1.4 -1.3 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS33585 -1.3 -1.7 exodeoxyribonuclease VII small subunit compare
BPHYT_RS04955 -1.3 -1.5 methionyl-tRNA synthetase compare
BPHYT_RS28255 -1.3 -1.2 hypothetical protein compare
BPHYT_RS06375 -1.3 -3.5 ribonuclease compare
BPHYT_RS05355 -1.3 -2.4 Crp/Fnr family transcriptional regulator compare
BPHYT_RS11745 -1.3 -1.1 (2Fe-2S)-binding protein compare
BPHYT_RS12725 -1.3 -7.0 regulator compare
BPHYT_RS02130 -1.3 -2.3 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS14735 -1.3 -1.0 hypothetical protein compare
BPHYT_RS16740 -1.3 -6.7 transcriptional regulator compare
BPHYT_RS02660 -1.3 -1.0 membrane protein compare
BPHYT_RS28930 -1.3 -0.9 chromosome partitioning protein ParA compare
BPHYT_RS33515 -1.3 -6.9 porin compare
BPHYT_RS18635 -1.3 -1.4 LamB/YcsF family protein compare
BPHYT_RS22360 -1.3 -1.4 response regulator receiver compare
BPHYT_RS29540 -1.3 -0.9 aldolase compare
BPHYT_RS21350 -1.3 -1.6 ADP-glucose pyrophosphorylase compare
BPHYT_RS08125 -1.3 -6.8 ATPase compare
BPHYT_RS23410 -1.3 -1.8 hypothetical protein compare
BPHYT_RS33385 -1.2 -0.8 major facilitator superfamily protein compare
BPHYT_RS01965 -1.2 -1.1 tRNA-Ala compare
BPHYT_RS05485 -1.2 -2.6 nitrogen regulatory protein P-II 1 compare
BPHYT_RS30340 -1.2 -1.5 AraC family transcriptional regulator compare
BPHYT_RS21170 -1.2 -2.2 LysR family transcriptional regulator compare
BPHYT_RS24500 -1.2 -1.2 histidine kinase compare
BPHYT_RS18340 -1.2 -0.9 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS16345 -1.2 -2.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS25845 -1.2 -0.8 RND transporter MFP subunit compare
BPHYT_RS08580 -1.2 -3.2 ADP-ribose pyrophosphatase compare
BPHYT_RS27800 -1.2 -1.9 esterase compare
BPHYT_RS17525 -1.2 -1.5 glutaredoxin compare
BPHYT_RS07220 -1.2 -1.4 GCN5 family acetyltransferase compare
BPHYT_RS22860 -1.2 -0.7 chemotaxis protein CheY compare
BPHYT_RS20155 -1.2 -1.1 hypothetical protein compare
BPHYT_RS32260 -1.2 -0.6 hypothetical protein compare
BPHYT_RS06325 -1.1 -4.5 ATPase compare
BPHYT_RS15950 -1.1 -2.6 tyrosine recombinase XerD compare
BPHYT_RS09000 -1.1 -0.9 competence protein ComE compare
BPHYT_RS08150 -1.1 -0.7 membrane protein compare
BPHYT_RS36385 -1.1 -0.7 TetR family transcriptional regulator compare
BPHYT_RS33540 -1.1 -1.6 hypothetical protein compare
BPHYT_RS26750 -1.1 -1.7 aldolase compare
BPHYT_RS14145 -1.1 -5.4 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS11155 -1.1 -0.8 hypothetical protein compare
BPHYT_RS04720 -1.1 -2.6 transcriptional regulator compare
BPHYT_RS34805 -1.1 -3.9 ABC transporter compare
BPHYT_RS21335 -1.1 -1.7 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS24565 -1.1 -2.2 membrane protein compare
BPHYT_RS20835 -1.1 -2.0 pyridoxal 4-dehydrogenase compare
BPHYT_RS23265 -1.1 -2.9 methylcrotonoyl-CoA carboxylase compare
BPHYT_RS26305 -1.1 -1.3 exonuclease compare
BPHYT_RS23570 -1.1 -3.0 chemotaxis protein CheY compare
BPHYT_RS04415 -1.1 -1.8 N-acylglucosamine 2-epimerase compare
BPHYT_RS25335 -1.1 -0.7 hypothetical protein compare
BPHYT_RS35080 -1.1 -1.4 short-chain dehydrogenase compare
BPHYT_RS00940 -1.1 -2.7 transposase compare
BPHYT_RS01425 -1.1 -1.8 3-phosphoglycerate dehydrogenase compare
BPHYT_RS25075 -1.1 -1.2 AraC family transcriptional regulator compare
BPHYT_RS23090 -1.1 -1.3 histidine kinase compare
BPHYT_RS08645 -1.0 -1.4 sulfonate ABC transporter compare
BPHYT_RS21620 -1.0 -1.0 GCN5 family acetyltransferase compare
BPHYT_RS25955 -1.0 -1.5 transcriptional regulator compare
BPHYT_RS11960 -1.0 -0.8 MarR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment