Experiment set21IT008 for Burkholderia phytofirmans PsJN

Parafilmed volatile agar plate with no fungus

Group: agar plate interaction control
Media: LB
Culturing: BFirm_ML3a, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 1-Feb-22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 6 genes in this experiment

SEED Subsystems

Subsystem	#Specific
Glycerol and Glycerol-3-phosphate Uptake and Utilization	2
Siderophore Pyoverdine	2
Glycerol fermenation to 1,3-propanediol	1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria	1
MLST	1
Oxidative stress	1
Photorespiration (oxidative C2 cycle)	1
Protein chaperones	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Tryptophan metabolism
• Glycerolipid metabolism
• Methane metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
superoxide radicals degradation	2	2	1
methanol oxidation to formaldehyde IV	2	1	1
ethanol degradation IV	3	3	1
glycerol degradation I	3	2	1
reactive oxygen species degradation	4	4	1
glycerol and glycerophosphodiester degradation	4	3	1