Experiment set21IT005 for Burkholderia phytofirmans PsJN

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

200 most important genes:

  gene name fitness t score description  
BPHYT_RS08960 -4.1 -2.7 threonine synthase compare
BPHYT_RS06190 -3.5 -4.2 heptosyltransferase compare
BPHYT_RS09500 -3.4 -6.0 glucose-6-phosphate isomerase compare
BPHYT_RS06175 -2.9 -6.6 LPS biosynthesis compare
BPHYT_RS04370 -2.7 -1.8 glycosyl transferase compare
BPHYT_RS04385 -2.6 -3.7 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS14855 -2.2 -2.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS17675 -2.2 -3.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17670 -2.1 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17685 -2.0 -10.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17690 -2.0 -10.0 imidazole glycerol phosphate synthase compare
BPHYT_RS17715 -2.0 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS12530 -2.0 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS26685 -1.9 -1.8 precorrin-8X methylmutase compare
BPHYT_RS11745 -1.8 -2.0 (2Fe-2S)-binding protein compare
BPHYT_RS29520 -1.8 -1.4 hypothetical protein compare
BPHYT_RS08130 -1.7 -2.0 transposase compare
BPHYT_RS01485 -1.7 -1.3 histidine kinase compare
BPHYT_RS22455 -1.7 -1.7 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS17700 -1.7 -4.6 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS20115 -1.7 -3.0 transcriptional regulator compare
BPHYT_RS26025 -1.6 -1.4 hypothetical protein compare
BPHYT_RS20245 -1.6 -4.7 iron ABC transporter substrate-binding protein compare
BPHYT_RS25470 -1.6 -2.3 alkylhydroperoxidase compare
BPHYT_RS14190 -1.6 -6.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17760 -1.6 -5.4 ABC transporter permease compare
BPHYT_RS16175 -1.6 -2.3 hemolysin D compare
BPHYT_RS12990 -1.6 -2.5 iron transporter compare
BPHYT_RS17920 -1.5 -1.4 protein CyaY compare
BPHYT_RS08235 -1.5 -1.2 nucleoprotein, Hfg, host factor I compare
BPHYT_RS03900 -1.5 -1.4 phospholipid-binding protein compare
BPHYT_RS26390 -1.5 -1.4 antibiotic resistance protein compare
BPHYT_RS32260 -1.5 -2.3 hypothetical protein compare
BPHYT_RS24315 -1.5 -1.7 phosphoribosyltransferase compare
BPHYT_RS33645 -1.4 -4.7 homoserine kinase compare
BPHYT_RS20235 -1.4 -2.5 iron ABC transporter compare
BPHYT_RS08245 -1.4 -3.5 anti-sigma factor compare
BPHYT_RS09860 -1.4 -1.1 pilus assembly protein PilP compare
BPHYT_RS16840 -1.3 -2.1 transketolase compare
BPHYT_RS09330 -1.3 -7.9 phytoene synthase compare
BPHYT_RS17100 -1.3 -4.6 RNA pyrophosphohydrolase compare
BPHYT_RS06900 -1.3 -5.2 aspartate aminotransferase compare
BPHYT_RS12550 -1.2 -1.2 GTP-binding protein HflX compare
BPHYT_RS10540 -1.2 -1.8 secretion protein compare
BPHYT_RS17765 -1.2 -5.0 toluene ABC transporter ATP-binding protein compare
BPHYT_RS17490 -1.2 -2.6 haloacid dehalogenase compare
BPHYT_RS22360 -1.2 -1.8 response regulator receiver compare
BPHYT_RS02610 -1.2 -4.2 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS06975 -1.1 -1.4 glutamate racemase compare
BPHYT_RS09315 -1.1 -0.8 chemotaxis protein CheY compare
BPHYT_RS20165 -1.1 -2.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS33580 -1.1 -4.7 geranyltranstransferase compare
BPHYT_RS22815 -1.1 -1.3 TonB-denpendent receptor compare
BPHYT_RS28840 -1.1 -2.5 oxidoreductase compare
BPHYT_RS22295 -1.1 -1.3 LysR family transcriptional regulator compare
BPHYT_RS15620 -1.1 -2.8 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS07960 -1.1 -1.5 hypothetical protein compare
BPHYT_RS16340 -1.1 -3.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS04095 -1.1 -1.3 SAM-dependent methyltransferase PhcB compare
BPHYT_RS17745 -1.0 -4.5 toluene tolerance family protein compare
BPHYT_RS10475 -1.0 -1.6 mammalian cell entry protein compare
BPHYT_RS04285 -1.0 -1.0 rhamnosyltransferase compare
BPHYT_RS20295 -1.0 -8.1 ligand-gated channel compare
BPHYT_RS17240 -1.0 -1.1 cell division protein FtsW compare
BPHYT_RS30315 -1.0 -1.7 LysR family transcriptional regulator compare
BPHYT_RS35245 -1.0 -1.5 hypothetical protein compare
BPHYT_RS12785 -1.0 -2.6 Rrf2 family transcriptional regulator compare
BPHYT_RS15415 -1.0 -5.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS08945 -1.0 -5.2 hypothetical protein compare
BPHYT_RS26775 -1.0 -1.5 chemotaxis protein CheB compare
BPHYT_RS07965 -1.0 -6.0 hypothetical protein compare
BPHYT_RS21770 -1.0 -2.3 aldehyde dehydrogenase compare
BPHYT_RS07480 -1.0 -1.2 FAD-dependent oxidoreductase compare
BPHYT_RS06375 -1.0 -3.9 ribonuclease compare
BPHYT_RS35660 -1.0 -3.0 membrane protein compare
BPHYT_RS06045 -1.0 -5.1 transaldolase compare
BPHYT_RS15320 -1.0 -1.5 hypothetical protein compare
BPHYT_RS34815 -1.0 -1.8 ABC transporter compare
BPHYT_RS20665 -1.0 -1.1 LysR family transcriptional regulator compare
BPHYT_RS04955 -1.0 -1.7 methionyl-tRNA synthetase compare
BPHYT_RS26880 -1.0 -1.4 ketosteroid isomerase compare
BPHYT_RS28065 -0.9 -1.6 hypothetical protein compare
BPHYT_RS08955 -0.9 -2.3 homoserine dehydrogenase compare
BPHYT_RS13245 -0.9 -2.8 hypothetical protein compare
BPHYT_RS03150 -0.9 -6.5 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS08850 -0.9 -1.0 transcriptional regulator compare
BPHYT_RS12535 -0.9 -1.1 membrane protein compare
BPHYT_RS05290 -0.9 -1.2 hypothetical protein compare
BPHYT_RS17755 -0.9 -3.5 ABC transporter substrate-binding protein compare
BPHYT_RS33150 -0.9 -0.9 beta-lactamase compare
BPHYT_RS18705 -0.9 -1.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS30450 -0.9 -1.0 ABC transporter permease compare
BPHYT_RS09620 -0.9 -2.0 aminodeoxychorismate lyase compare
BPHYT_RS09355 -0.9 -1.7 LysR family transcriptional regulator compare
BPHYT_RS17530 -0.9 -2.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17380 -0.9 -4.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS20225 -0.9 -3.6 taurine catabolism dioxygenase tauD/tfdA compare
BPHYT_RS07145 -0.9 -1.3 DNA-binding protein compare
BPHYT_RS17680 -0.9 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS27145 -0.9 -1.8 TetR family transcriptional regulator compare
BPHYT_RS12465 -0.9 -1.2 inositol monophosphatase compare
BPHYT_RS13605 -0.9 -0.8 tRNA-Pro compare
BPHYT_RS12725 -0.8 -6.0 regulator compare
BPHYT_RS04865 -0.8 -2.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BPHYT_RS04335 -0.8 -1.3 membrane protein compare
BPHYT_RS04730 -0.8 -3.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS14400 -0.8 -2.2 anti-sigma factor compare
BPHYT_RS16735 -0.8 -4.2 phosphogluconate dehydratase compare
BPHYT_RS04430 -0.8 -1.3 amino acid ABC transporter ATPase compare
BPHYT_RS28660 -0.8 -1.2 polyvinylalcohol dehydrogenase compare
BPHYT_RS11390 -0.8 -5.9 penicillin-binding protein 1A compare
BPHYT_RS11970 -0.8 -1.2 cupin compare
BPHYT_RS27370 -0.8 -1.7 CoA transferase compare
BPHYT_RS22260 -0.8 -1.4 hypothetical protein compare
BPHYT_RS06710 -0.8 -1.1 hypothetical protein compare
BPHYT_RS22485 -0.8 -2.7 NADP-dependent aryl-alcohol dehydrogenase compare
BPHYT_RS14845 -0.8 -0.5 cysteine synthase compare
BPHYT_RS27850 -0.8 -1.4 hemerythrin compare
BPHYT_RS22740 -0.8 -1.9 ABC transporter permease compare
BPHYT_RS35530 -0.8 -1.5 arsenate reductase compare
BPHYT_RS10120 -0.8 -2.0 membrane protein compare
BPHYT_RS02885 -0.8 -4.4 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS26870 -0.8 -2.5 cytochrome C551 compare
BPHYT_RS16020 -0.8 -1.3 AsnC family transcriptional regulator compare
BPHYT_RS26010 -0.8 -2.6 ABC transporter substrate-binding protein compare
BPHYT_RS34800 -0.8 -2.0 thioesterase compare
BPHYT_RS20240 -0.8 -2.8 iron reductase compare
BPHYT_RS25005 -0.8 -1.2 FMN reductase compare
BPHYT_RS28410 -0.8 -1.5 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS15335 -0.8 -4.8 coproporphyrinogen III oxidase compare
BPHYT_RS02765 -0.8 -1.1 cytochrome BD oxidase subunit I compare
BPHYT_RS30065 -0.8 -1.1 shikimate dehydrogenase compare
BPHYT_RS06075 -0.8 -2.5 hypothetical protein compare
BPHYT_RS30465 -0.8 -1.0 short-chain dehydrogenase compare
BPHYT_RS09440 -0.7 -0.8 glycerate kinase compare
BPHYT_RS04965 -0.7 -4.4 ATP-binding protein compare
BPHYT_RS07835 -0.7 -1.3 muconolactone delta-isomerase compare
BPHYT_RS32200 -0.7 -1.4 lytic transglycosylase compare
BPHYT_RS36185 -0.7 -1.8 hypothetical protein compare
BPHYT_RS28170 -0.7 -2.6 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS09690 -0.7 -1.0 phosphate starvation-inducible protein PsiF compare
BPHYT_RS04740 -0.7 -3.5 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS32675 -0.7 -1.6 2-methylcitrate dehydratase compare
BPHYT_RS29485 -0.7 -1.5 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS07850 -0.7 -1.8 catechol 1,2-dioxygenase compare
BPHYT_RS03240 -0.7 -1.7 formate dehydrogenase accessory protein FdhD compare
BPHYT_RS07845 -0.7 -1.8 LysR family transcriptional regulator compare
BPHYT_RS35310 -0.7 -1.3 GCN5 family N-acetyltransferase compare
BPHYT_RS08000 -0.7 -1.9 antibiotic biosynthesis monooxygenase compare
BPHYT_RS34150 -0.7 -1.8 Asp/Glu/hydantoin racemase compare
BPHYT_RS14245 -0.7 -0.8 membrane protein compare
BPHYT_RS34805 -0.7 -3.3 ABC transporter compare
BPHYT_RS20900 -0.7 -1.1 phytanoyl-CoA dioxygenase compare
BPHYT_RS30645 -0.7 -1.5 hypothetical protein compare
BPHYT_RS30140 -0.7 -1.2 3-methylitaconate isomerase compare
BPHYT_RS14195 -0.7 -1.0 carbamoyl phosphate synthase small subunit compare
BPHYT_RS26355 -0.7 -1.2 hypothetical protein compare
BPHYT_RS18910 -0.7 -0.8 FlgN compare
BPHYT_RS01345 -0.7 -2.2 endonuclease/exonuclease/phosphatase compare
BPHYT_RS27175 -0.7 -0.8 DNA-binding protein compare
BPHYT_RS01095 -0.7 -0.8 hypothetical protein compare
BPHYT_RS15490 -0.7 -2.2 coproporphyrinogen III oxidase compare
BPHYT_RS32860 -0.7 -0.8 hypothetical protein compare
BPHYT_RS12060 -0.7 -1.2 hypothetical protein compare
BPHYT_RS19570 -0.7 -5.0 sodium/hydrogen exchanger compare
BPHYT_RS03570 -0.7 -3.5 heat-inducible transcription repressor HrcA compare
BPHYT_RS33535 -0.7 -5.8 RNA polymerase sigma factor RpoD compare
BPHYT_RS30810 -0.7 -1.3 transcriptional regulator compare
BPHYT_RS04455 -0.7 -0.7 glycosyl transferase compare
BPHYT_RS09850 -0.7 -0.9 molybdopterin oxidoreductase compare
BPHYT_RS33810 -0.7 -2.1 membrane protein compare
BPHYT_RS21620 -0.7 -1.0 GCN5 family acetyltransferase compare
BPHYT_RS05030 -0.7 -2.2 sugar ABC transporter permease compare
BPHYT_RS23540 -0.7 -2.3 RND transporter compare
BPHYT_RS20220 -0.7 -1.1 antibiotic synthesis protein MbtH compare
BPHYT_RS14685 -0.7 -2.8 peptidase C39 compare
BPHYT_RS04005 -0.7 -1.2 GDP-L-fucose synthase compare
BPHYT_RS34780 -0.7 -1.9 phytoene synthase compare
BPHYT_RS10720 -0.7 -0.8 hypothetical protein compare
BPHYT_RS23675 -0.7 -1.2 lysine transporter LysE compare
BPHYT_RS12855 -0.7 -1.4 hypothetical protein compare
BPHYT_RS21495 -0.7 -0.8 ABC transporter compare
BPHYT_RS01340 -0.7 -1.7 ChrB domain-containing protein compare
BPHYT_RS10465 -0.7 -2.9 hypothetical protein compare
BPHYT_RS29450 -0.7 -1.3 phosphonate metabolism protein compare
BPHYT_RS10205 -0.7 -2.3 D-lactate dehydrogenase compare
BPHYT_RS28630 -0.7 -2.0 IclR family transcriptional regulator compare
BPHYT_RS02650 -0.7 -1.1 membrane protein compare
BPHYT_RS00325 -0.7 -1.0 hypothetical protein compare
BPHYT_RS20590 -0.6 -1.7 methionine sulfoxide reductase A compare
BPHYT_RS11155 -0.6 -0.8 hypothetical protein compare
BPHYT_RS00380 -0.6 -1.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS34810 -0.6 -2.6 RND transporter compare
BPHYT_RS06540 -0.6 -3.2 RNA polymerase sigma70 factor compare
BPHYT_RS26750 -0.6 -1.2 aldolase compare
BPHYT_RS05355 -0.6 -1.3 Crp/Fnr family transcriptional regulator compare
BPHYT_RS20155 -0.6 -1.1 hypothetical protein compare
BPHYT_RS36075 -0.6 -1.6 hypothetical protein compare
BPHYT_RS25935 -0.6 -1.7 type III secretion protein compare
BPHYT_RS22870 -0.6 -0.9 copper transporter compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Burkholderia phytofirmans PsJN

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms