Experiment set20IT086 for Burkholderia phytofirmans PsJN

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
BPHYT_RS20095 -4.7 -1.6 transcriptional regulator compare
BPHYT_RS09515 -3.7 -5.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS08960 -3.5 -2.0 threonine synthase compare
BPHYT_RS14190 -3.2 -7.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS12465 -3.1 -3.6 inositol monophosphatase compare
BPHYT_RS16675 -3.1 -2.1 dihydroorotase compare
BPHYT_RS16710 -3.0 -1.4 LysR family transcriptional regulator compare
BPHYT_RS33645 -2.9 -7.1 homoserine kinase compare
BPHYT_RS03640 -2.8 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS14865 -2.4 -2.0 UDP-glucose 6-dehydrogenase compare
BPHYT_RS08340 -2.2 -0.7 chemotaxis protein CheY compare
BPHYT_RS14845 -2.0 -1.3 cysteine synthase compare
BPHYT_RS16905 -2.0 -5.8 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS06900 -2.0 -5.0 aspartate aminotransferase compare
BPHYT_RS12840 -1.9 -3.5 pyruvate dehydrogenase compare
BPHYT_RS08850 -1.9 -1.7 transcriptional regulator compare
BPHYT_RS16255 -1.8 -3.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS17240 -1.8 -1.5 cell division protein FtsW compare
BPHYT_RS06610 -1.8 -1.1 triosephosphate isomerase compare
BPHYT_RS18340 -1.8 -1.6 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS12845 -1.8 -11.1 ATPase compare
BPHYT_RS01825 -1.7 -2.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS14195 -1.7 -1.7 carbamoyl phosphate synthase small subunit compare
BPHYT_RS33805 -1.7 -1.1 hypothetical protein compare
BPHYT_RS06405 -1.7 -5.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS18320 -1.6 -6.5 orotate phosphoribosyltransferase compare
BPHYT_RS30465 -1.6 -1.3 short-chain dehydrogenase compare
BPHYT_RS23350 -1.6 -2.5 NAD-dependent epimerase/dehydratase compare
BPHYT_RS22205 -1.5 -3.2 hypothetical protein compare
BPHYT_RS17530 -1.5 -4.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS08565 -1.5 -0.7 dihydroorotate dehydrogenase compare
BPHYT_RS35215 -1.4 -1.4 dehydrogenase compare
BPHYT_RS22145 -1.4 -1.7 phosphoesterase compare
BPHYT_RS17405 -1.4 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS00325 -1.4 -2.2 hypothetical protein compare
BPHYT_RS08955 -1.4 -2.7 homoserine dehydrogenase compare
BPHYT_RS27890 -1.4 -1.6 hypothetical protein compare
BPHYT_RS29620 -1.3 -0.9 hypothetical protein compare
BPHYT_RS32260 -1.3 -1.5 hypothetical protein compare
BPHYT_RS23230 -1.3 -1.0 histidine kinase compare
BPHYT_RS10720 -1.3 -1.5 hypothetical protein compare
BPHYT_RS01505 -1.3 -2.1 7-cyano-7-deazaguanine reductase compare
BPHYT_RS17700 -1.3 -2.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS14855 -1.3 -1.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS11805 -1.3 -2.0 hypothetical protein compare
BPHYT_RS28705 -1.3 -1.2 IclR family transcriptional regulator compare
BPHYT_RS10650 -1.3 -1.6 membrane protein compare
BPHYT_RS31730 -1.3 -2.2 aminotransferase class III compare
BPHYT_RS25770 -1.2 -1.1 hypothetical protein compare
BPHYT_RS21025 -1.2 -0.9 cation-binding protein compare
BPHYT_RS14895 -1.2 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS10120 -1.2 -2.8 membrane protein compare
BPHYT_RS07595 -1.2 -1.6 membrane protein compare
BPHYT_RS15075 -1.2 -1.9 dihydrokaempferol 4-reductase compare
BPHYT_RS33355 -1.2 -2.7 oxalyl-CoA decarboxylase compare
BPHYT_RS26470 -1.1 -1.2 MFS transporter compare
BPHYT_RS25450 -1.1 -1.4 membrane protein compare
BPHYT_RS22265 -1.1 -1.3 hypothetical protein compare
BPHYT_RS16085 -1.1 -2.6 DeoR faimly transcriptional regulator compare
BPHYT_RS14505 -1.1 -2.0 membrane protein compare
BPHYT_RS15415 -1.1 -6.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS06105 -1.1 -1.1 hypothetical protein compare
BPHYT_RS06685 -1.1 -1.3 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS34920 -1.1 -2.6 IclR family transcriptional regulator compare
BPHYT_RS20060 -1.1 -1.1 hypothetical protein compare
BPHYT_RS01485 -1.1 -0.9 histidine kinase compare
BPHYT_RS31890 -1.1 -1.2 transposase compare
BPHYT_RS25645 -1.1 -1.9 dehydrogenase compare
BPHYT_RS13200 -1.0 -1.2 molybdopterin binding oxidoreductase compare
BPHYT_RS05675 -1.0 -4.8 hypothetical protein compare
BPHYT_RS29090 -1.0 -2.0 oxidoreductase compare
BPHYT_RS11020 -1.0 -1.8 transporter compare
BPHYT_RS20835 -1.0 -1.5 pyridoxal 4-dehydrogenase compare
BPHYT_RS23475 -1.0 -0.9 luciferase compare
BPHYT_RS15620 -1.0 -1.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS15920 -1.0 -5.0 argininosuccinate synthase compare
BPHYT_RS06710 -1.0 -1.1 hypothetical protein compare
BPHYT_RS20115 -1.0 -2.0 transcriptional regulator compare
BPHYT_RS09480 -1.0 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS11755 -1.0 -1.8 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS21645 -1.0 -2.0 LysR family transcriptional regulator compare
BPHYT_RS26515 -1.0 -1.9 HAD family hydrolase compare
BPHYT_RS18710 -1.0 -2.3 membrane protein compare
BPHYT_RS34545 -1.0 -1.9 transcriptional regulator compare
BPHYT_RS11840 -1.0 -1.9 LysR family transcriptional regulator compare
BPHYT_RS05485 -1.0 -2.7 nitrogen regulatory protein P-II 1 compare
BPHYT_RS16180 -1.0 -0.8 TetR family transcriptional regulator compare
BPHYT_RS20070 -1.0 -1.6 hypothetical protein compare
BPHYT_RS13385 -1.0 -3.7 hypothetical protein compare
BPHYT_RS11635 -1.0 -0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS14900 -1.0 -2.0 prephenate dehydrogenase compare
BPHYT_RS28830 -1.0 -1.0 LysR family transcriptional regulator compare
BPHYT_RS02765 -1.0 -0.9 cytochrome BD oxidase subunit I compare
BPHYT_RS20665 -0.9 -1.1 LysR family transcriptional regulator compare
BPHYT_RS17885 -0.9 -2.5 3-dehydroquinate synthase compare
BPHYT_RS17685 -0.9 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS16090 -0.9 -1.2 hypothetical protein compare
BPHYT_RS07050 -0.9 -1.6 membrane protein compare
BPHYT_RS26415 -0.9 -1.9 glutathione S-transferase compare
BPHYT_RS09280 -0.9 -1.0 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS12615 -0.9 -1.0 dihydrodipicolinate synthase compare
BPHYT_RS10540 -0.9 -1.2 secretion protein compare
BPHYT_RS26685 -0.9 -1.1 precorrin-8X methylmutase compare
BPHYT_RS03215 -0.9 -1.6 TetR family transcriptional regulator compare
BPHYT_RS04965 -0.9 -3.2 ATP-binding protein compare
BPHYT_RS32495 -0.9 -1.9 ABC transporter compare
BPHYT_RS07375 -0.9 -2.1 membrane protein compare
BPHYT_RS27485 -0.9 -2.2 NAD-dependent dehydratase compare
BPHYT_RS25095 -0.9 -1.5 AraC family transcriptional regulator compare
BPHYT_RS23315 -0.9 -1.1 hypothetical protein compare
BPHYT_RS26130 -0.9 -1.8 ABC transporter permease compare
BPHYT_RS29110 -0.9 -1.7 DNA-directed DNA polymerase compare
BPHYT_RS23455 -0.9 -0.7 phosphorylase compare
BPHYT_RS27895 -0.9 -1.8 enoyl-CoA hydratase compare
BPHYT_RS10690 -0.9 -2.0 Rieske (2Fe-2S) protein compare
BPHYT_RS27145 -0.9 -1.7 TetR family transcriptional regulator compare
BPHYT_RS02300 -0.9 -1.1 acid shock protein compare
BPHYT_RS32335 -0.9 -1.4 AsnC family transcriptional regulator compare
BPHYT_RS23120 -0.8 -3.0 FAD-dependent oxidoreductase compare
BPHYT_RS31400 -0.8 -0.8 methyl-accepting chemotaxis protein compare
BPHYT_RS03400 -0.8 -0.9 ATP-dependent DNA helicase RecG compare
BPHYT_RS11915 -0.8 -2.0 hypothetical protein compare
BPHYT_RS08165 -0.8 -1.5 pilus assembly protein TadE compare
BPHYT_RS09930 -0.8 -1.4 LysR family transcriptional regulator compare
BPHYT_RS04340 -0.8 -2.5 hypothetical protein compare
BPHYT_RS09205 -0.8 -2.1 cytochrome P450 compare
BPHYT_RS30920 -0.8 -2.3 hypothetical protein compare
BPHYT_RS31205 -0.8 -1.2 peptide ABC transporter ATP-binding protein compare
BPHYT_RS27785 -0.8 -1.0 hypothetical protein compare
BPHYT_RS33990 -0.8 -0.8 ATPase compare
BPHYT_RS26975 -0.8 -1.3 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS07055 -0.8 -1.8 sulfotransferase compare
BPHYT_RS15800 -0.8 -2.7 GntR family transcriptional regulator compare
BPHYT_RS31905 -0.8 -1.3 hypothetical protein compare
BPHYT_RS05910 -0.8 -1.9 hypothetical protein compare
BPHYT_RS26185 -0.8 -0.8 thioesterase compare
BPHYT_RS33920 -0.8 -3.0 type II citrate synthase compare
BPHYT_RS27160 -0.8 -1.1 hypothetical protein compare
BPHYT_RS33185 -0.8 -3.3 methyltransferase type 11 compare
BPHYT_RS28790 -0.8 -1.5 membrane protein compare
BPHYT_RS10675 -0.8 -1.4 muconate cycloisomerase compare
BPHYT_RS00750 -0.8 -1.9 SpoVT/AbrB domain-containing protein compare
BPHYT_RS18760 -0.8 -2.0 flagellar biosynthesis protein FliT compare
BPHYT_RS16840 -0.8 -1.5 transketolase compare
BPHYT_RS13285 -0.8 -2.7 amino acid ABC transporter ATP-binding protein compare
BPHYT_RS05900 -0.8 -1.3 hypothetical protein compare
BPHYT_RS00440 -0.8 -2.4 ripening-induced protein-Zn-containing oxidoreductase compare
BPHYT_RS00140 -0.8 -2.4 MerR family transcriptional regulator compare
BPHYT_RS26510 -0.8 -1.0 transcriptional regulator compare
BPHYT_RS26380 -0.8 -1.4 cobalamin biosynthesis protein CobT compare
BPHYT_RS28075 -0.8 -0.7 cytochrome B561 compare
BPHYT_RS24315 -0.8 -0.8 phosphoribosyltransferase compare
BPHYT_RS05470 -0.8 -0.8 excinuclease ABC subunit C compare
BPHYT_RS34100 -0.8 -1.4 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS28300 -0.8 -1.1 histone nucleoid-structuring protein H-NS compare
BPHYT_RS29915 -0.8 -1.4 GntR family transcriptional regulator compare
BPHYT_RS05035 -0.8 -3.0 sugar ABC transporter permease compare
BPHYT_RS08715 -0.8 -0.9 adenylyl-sulfate kinase compare
BPHYT_RS14370 -0.8 -1.3 ribonuclease III compare
BPHYT_RS07145 -0.7 -1.0 DNA-binding protein compare
BPHYT_RS10475 -0.7 -1.2 mammalian cell entry protein compare
BPHYT_RS12060 -0.7 -0.8 hypothetical protein compare
BPHYT_RS28350 -0.7 -1.1 fatty acid desaturase compare
BPHYT_RS26040 -0.7 -1.0 cysteine hydrolase compare
BPHYT_RS08135 -0.7 -0.9 hypothetical protein compare
BPHYT_RS21700 -0.7 -1.2 phosphotransacetylase compare
BPHYT_RS35530 -0.7 -1.8 arsenate reductase compare
BPHYT_RS33695 -0.7 -1.7 molybdenum ABC transporter ATPase compare
BPHYT_RS30665 -0.7 -1.5 peroxidase compare
BPHYT_RS07150 -0.7 -2.4 TonB-dependent receptor compare
BPHYT_RS00770 -0.7 -0.8 conjugal transfer protein TraC compare
BPHYT_RS10945 -0.7 -1.1 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS04585 -0.7 -1.6 hypothetical protein compare
BPHYT_RS21855 -0.7 -1.8 hypothetical protein compare
BPHYT_RS06045 -0.7 -3.0 transaldolase compare
BPHYT_RS05085 -0.7 -1.8 LysR family transcriptional regulator compare
BPHYT_RS22055 -0.7 -1.3 DNA-binding protein compare
BPHYT_RS27850 -0.7 -1.2 hemerythrin compare
BPHYT_RS28980 -0.7 -2.7 membrane protein compare
BPHYT_RS03410 -0.7 -0.9 queuine tRNA-ribosyltransferase compare
BPHYT_RS05330 -0.7 -1.5 phosphohydrolase compare
BPHYT_RS33840 -0.7 -3.0 amidophosphoribosyltransferase compare
BPHYT_RS29160 -0.7 -1.4 transporter compare
BPHYT_RS04120 -0.7 -2.8 protein tyrosine kinase compare
BPHYT_RS26750 -0.7 -1.1 aldolase compare
BPHYT_RS23520 -0.7 -1.4 peroxidase compare
BPHYT_RS03570 -0.7 -3.2 heat-inducible transcription repressor HrcA compare
BPHYT_RS21555 -0.7 -3.6 beta alanine--pyruvate aminotransferase compare
BPHYT_RS02005 -0.7 -0.7 diguanylate phosphodiesterase compare
BPHYT_RS24390 -0.7 -1.7 hypothetical protein compare
BPHYT_RS18910 -0.7 -1.0 FlgN compare
BPHYT_RS13705 -0.7 -1.7 chorismate synthase compare
BPHYT_RS08000 -0.7 -1.2 antibiotic biosynthesis monooxygenase compare
BPHYT_RS23030 -0.7 -0.8 gluconate 2-dehydrogenase compare
BPHYT_RS11000 -0.7 -2.5 glutathione S-transferase compare
BPHYT_RS36365 -0.7 -1.6 hypothetical protein compare
BPHYT_RS05300 -0.7 -2.3 polyketide cyclase compare
BPHYT_RS20890 -0.7 -1.8 transglycosylase compare
BPHYT_RS32525 -0.7 -0.8 hypothetical protein compare
BPHYT_RS30150 -0.7 -2.5 methylcitrate synthase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in r2a control experiments