Experiment set20IT086 for Burkholderia phytofirmans PsJN

Compare to:

R2A control

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS02860 +1.6 1.6 membrane protein compare
BPHYT_RS30750 +1.5 3.0 GntR family transcriptional regulator compare
BPHYT_RS26965 +1.4 1.9 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS28660 +1.3 2.1 polyvinylalcohol dehydrogenase compare
BPHYT_RS30140 +1.3 2.4 3-methylitaconate isomerase compare
BPHYT_RS34815 +1.2 2.4 ABC transporter compare
BPHYT_RS27065 +1.2 2.0 hypothetical protein compare
BPHYT_RS22260 +1.2 2.2 hypothetical protein compare
BPHYT_RS33370 +1.2 1.3 LysR family transcriptional regulator compare
BPHYT_RS05650 +1.2 1.6 hypothetical protein compare
BPHYT_RS30890 +1.2 2.1 hypothetical protein compare
BPHYT_RS26775 +1.1 1.9 chemotaxis protein CheB compare
BPHYT_RS02570 +1.1 8.8 phosphocarrier protein HPr compare
BPHYT_RS02935 +1.1 5.2 potassium transporter compare
BPHYT_RS26300 +1.1 2.1 ATP-dependent DNA ligase compare
BPHYT_RS04015 +1.1 2.3 glycosyl transferase compare
BPHYT_RS33965 +1.1 2.0 methylcitrate synthase compare
BPHYT_RS02880 +1.0 1.8 ATP-dependent protease compare
BPHYT_RS30795 +1.0 1.6 short-chain dehydrogenase compare
BPHYT_RS09465 +1.0 1.6 transcriptional regulator compare
BPHYT_RS16880 +1.0 1.6 malic enzyme compare
BPHYT_RS00855 +1.0 2.2 hypothetical protein compare
BPHYT_RS09525 +1.0 2.9 toxin HipA compare
BPHYT_RS31685 +1.0 3.1 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS11455 +1.0 3.9 manganese transporter compare
BPHYT_RS21330 +1.0 1.8 hypothetical protein compare
BPHYT_RS31515 +1.0 2.0 agmatinase compare
BPHYT_RS15320 +1.0 1.5 hypothetical protein compare
BPHYT_RS35315 +0.9 1.2 threonyl-tRNA synthetase compare
BPHYT_RS32690 +0.9 1.3 acyl-CoA dehydrogenase compare
BPHYT_RS25565 +0.9 2.2 hypothetical protein compare
BPHYT_RS04595 +0.9 1.8 cytoplasmic protein compare
BPHYT_RS30490 +0.9 1.1 2-haloalkanoic acid dehalogenase compare
BPHYT_RS08150 +0.9 1.0 membrane protein compare
BPHYT_RS29945 +0.9 1.5 histidine kinase compare
BPHYT_RS12825 +0.9 2.2 phasin family protein compare
BPHYT_RS16420 +0.9 2.8 copper resistance protein CopD compare
BPHYT_RS27295 +0.9 0.5 hypothetical protein compare
BPHYT_RS26465 +0.9 1.1 metallophosphoesterase compare
BPHYT_RS23495 +0.9 2.9 thioredoxin reductase compare
BPHYT_RS02760 +0.9 1.3 cytochrome BD oxidase subunit II compare
BPHYT_RS00690 +0.8 0.9 transcriptional regulator compare
BPHYT_RS02725 +0.8 2.0 GntR family transcriptional regulator compare
BPHYT_RS33070 +0.8 1.2 haloacid dehalogenase compare
BPHYT_RS32595 +0.8 1.2 hypothetical protein compare
BPHYT_RS22910 +0.8 1.0 hypothetical protein compare
BPHYT_RS06335 +0.8 1.3 CopG family transcriptional regulator compare
BPHYT_RS16290 +0.8 1.0 hypothetical protein compare
BPHYT_RS32240 +0.8 1.1 chromosome replication initiation inhibitor protein compare
BPHYT_RS06025 +0.8 3.0 hypothetical protein compare
BPHYT_RS25800 +0.8 1.1 sugar ABC transporter permease compare
BPHYT_RS23525 +0.8 1.3 hypothetical protein compare
BPHYT_RS10165 +0.8 0.9 transcriptional regulator compare
BPHYT_RS30365 +0.8 0.8 beta-lactamase compare
BPHYT_RS27060 +0.8 2.1 photosystem reaction center subunit H compare
BPHYT_RS14060 +0.8 1.1 peptidase M23 compare
BPHYT_RS31285 +0.8 2.0 universal stress protein A compare
BPHYT_RS26550 +0.8 0.9 Fis family transcriptional regulator compare
BPHYT_RS29035 +0.8 1.6 arsenic transporter compare
BPHYT_RS21460 +0.8 1.4 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS24665 +0.7 1.2 ABC transporter permease compare
BPHYT_RS05645 +0.7 1.6 hypothetical protein compare
BPHYT_RS03455 +0.7 1.6 paraquat-inducible protein A compare
BPHYT_RS10265 +0.7 1.6 aminotransferase compare
BPHYT_RS32520 +0.7 2.8 GntR family transcriptional regulator compare
BPHYT_RS10400 +0.7 0.9 taurine ABC transporter permease compare
BPHYT_RS11555 +0.7 1.8 allantoinase compare
BPHYT_RS30915 +0.7 1.6 hypothetical protein compare
BPHYT_RS12325 +0.7 2.0 GNAT family acetyltransferase compare
BPHYT_RS33150 +0.7 0.6 beta-lactamase compare
BPHYT_RS25070 +0.7 1.1 choline ABC transporter permease compare
BPHYT_RS22135 +0.7 1.7 3-ketoacyl-ACP reductase compare
BPHYT_RS01945 +0.7 2.3 hypothetical protein compare
BPHYT_RS33385 +0.7 0.9 major facilitator superfamily protein compare
BPHYT_RS02660 +0.7 1.0 membrane protein compare
BPHYT_RS01985 +0.7 1.4 hypothetical protein compare
BPHYT_RS05395 +0.7 1.1 hypothetical protein compare
BPHYT_RS02480 +0.7 1.1 alkaline phosphatase compare
BPHYT_RS20520 +0.7 1.2 transcriptional regulator compare
BPHYT_RS02595 +0.7 0.9 sulfurtransferase compare
BPHYT_RS22530 +0.7 1.0 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS29520 +0.7 0.6 hypothetical protein compare
BPHYT_RS27210 +0.7 1.9 alcohol dehydrogenase compare
BPHYT_RS16835 +0.7 2.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS22685 +0.7 2.9 shikimate 5-dehydrogenase compare
BPHYT_RS09085 +0.7 2.8 mannosyltransferase compare
BPHYT_RS32400 +0.7 1.6 TetR family transcriptional regulator compare
BPHYT_RS20935 +0.7 2.3 dehydrogenase compare
BPHYT_RS33010 +0.7 1.9 hypothetical protein compare
BPHYT_RS08040 +0.7 3.1 aspartate aminotransferase compare
BPHYT_RS34735 +0.7 2.7 hypothetical protein compare
BPHYT_RS13170 +0.7 1.6 ATPase compare
BPHYT_RS24220 +0.7 1.8 alpha/beta hydrolase compare
BPHYT_RS30455 +0.7 2.2 transketolase compare
BPHYT_RS36275 +0.7 1.2 hypothetical protein compare
BPHYT_RS02470 +0.6 2.8 phosphoserine phosphatase compare
BPHYT_RS35005 +0.6 1.8 molecular chaperone DnaJ compare
BPHYT_RS13835 +0.6 0.9 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS31345 +0.6 1.5 malonate transporter compare
BPHYT_RS22225 +0.6 2.1 hypothetical protein compare
BPHYT_RS35145 +0.6 1.7 PEBP family protein compare
BPHYT_RS19895 +0.6 1.3 rod shape-determining protein RodA compare
BPHYT_RS10710 +0.6 0.7 sensor histidine kinase compare
BPHYT_RS22985 +0.6 1.4 hypothetical protein compare
BPHYT_RS16665 +0.6 1.5 peroxiredoxin compare
BPHYT_RS30995 +0.6 0.6 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS00815 +0.6 0.9 hypothetical protein compare
BPHYT_RS11540 +0.6 1.4 ureidoglycolate hydrolase compare
BPHYT_RS36480 +0.6 1.4 hypothetical protein compare
BPHYT_RS22125 +0.6 1.5 hypothetical protein compare
BPHYT_RS13605 +0.6 0.8 tRNA-Pro compare
BPHYT_RS26880 +0.6 1.4 ketosteroid isomerase compare
BPHYT_RS01975 +0.6 1.2 hypothetical protein compare
BPHYT_RS23080 +0.6 2.3 gamma-glutamyltransferase compare
BPHYT_RS26160 +0.6 2.2 membrane protein compare
BPHYT_RS11405 +0.6 1.9 hypothetical protein compare
BPHYT_RS15015 +0.6 0.9 ArsR family transcriptional regulator compare
BPHYT_RS36400 +0.6 1.0 hypothetical protein compare
BPHYT_RS10175 +0.6 1.0 membrane protein compare
BPHYT_RS01790 +0.6 5.3 LuxR family transcriptional regulator compare
BPHYT_RS32105 +0.6 3.5 hypothetical protein compare
BPHYT_RS14660 +0.6 2.2 hypothetical protein compare
BPHYT_RS15955 +0.6 1.2 methylated-DNA--protein-cysteine methyltransferase compare
BPHYT_RS14245 +0.6 0.7 membrane protein compare
BPHYT_RS35945 +0.6 1.4 response regulator receiver compare
BPHYT_RS10395 +0.6 1.0 sulfonate ABC transporter compare
BPHYT_RS11225 +0.6 2.3 magnesium transporter compare
BPHYT_RS22190 +0.6 0.7 nucleoid-structuring protein H-NS compare
BPHYT_RS13040 +0.6 1.3 hypothetical protein compare
BPHYT_RS20580 +0.6 2.2 NADH dehydrogenase compare
BPHYT_RS27495 +0.6 0.6 hypothetical protein compare
BPHYT_RS07920 +0.6 1.3 hypothetical protein compare
BPHYT_RS12265 +0.6 0.9 alanine acetyltransferase compare
BPHYT_RS18705 +0.6 0.9 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS19010 +0.6 2.7 flagellar motor protein MotB compare
BPHYT_RS11280 +0.6 2.3 membrane protein compare
BPHYT_RS32675 +0.6 1.0 2-methylcitrate dehydratase compare
BPHYT_RS29320 +0.6 1.2 histidine kinase compare
BPHYT_RS21420 +0.6 2.0 3-oxoadipate CoA-transferase subunit B compare
BPHYT_RS04095 +0.6 0.8 SAM-dependent methyltransferase PhcB compare
BPHYT_RS01455 +0.6 0.7 peptide deformylase compare
BPHYT_RS28130 +0.6 2.0 GntR family transcriptional regulator compare
BPHYT_RS03915 +0.6 2.9 hypothetical protein compare
BPHYT_RS33030 +0.6 0.6 hypothetical protein compare
BPHYT_RS32115 +0.6 1.9 hypothetical protein compare
BPHYT_RS05665 +0.6 1.3 integrase compare
BPHYT_RS09905 +0.6 0.9 hypothetical protein compare
BPHYT_RS27195 +0.6 2.8 LacI family transcriptional regulator compare
BPHYT_RS31235 +0.6 1.8 peptide ABC transporter permease compare
BPHYT_RS28740 +0.6 1.6 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
BPHYT_RS34905 +0.6 1.8 hypothetical protein compare
BPHYT_RS25595 +0.6 1.5 ATPase AAA compare
BPHYT_RS29850 +0.6 0.8 protein tyrosine kinase compare
BPHYT_RS26730 +0.5 2.1 membrane protein compare
BPHYT_RS21910 +0.5 0.9 ABC transporter permease compare
BPHYT_RS09850 +0.5 0.6 molybdopterin oxidoreductase compare
BPHYT_RS01965 +0.5 0.9 tRNA-Ala compare
BPHYT_RS31050 +0.5 0.6 epimerase compare
BPHYT_RS19115 +0.5 1.5 acyl carrier protein compare
BPHYT_RS12225 +0.5 2.4 carnitine dehydratase compare
BPHYT_RS29485 +0.5 0.9 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS02545 +0.5 1.9 nitrogen regulatory protein P-II 1 compare
BPHYT_RS35480 +0.5 1.1 salicylyl-CoA 5-hydroxylase compare
BPHYT_RS09620 +0.5 1.0 aminodeoxychorismate lyase compare
BPHYT_RS06840 +0.5 2.5 hypothetical protein compare
BPHYT_RS10860 +0.5 1.5 transcriptional regulator compare
BPHYT_RS23860 +0.5 1.0 malonic semialdehyde reductase compare
BPHYT_RS17810 +0.5 1.6 transcriptional regulator compare
BPHYT_RS06915 +0.5 1.4 hypothetical protein compare
BPHYT_RS20905 +0.5 0.9 hypothetical protein compare
BPHYT_RS22300 +0.5 0.9 hypothetical protein compare
BPHYT_RS29800 +0.5 1.1 hypothetical protein compare
BPHYT_RS00760 +0.5 2.7 hypothetical protein compare
BPHYT_RS25500 +0.5 0.8 hypothetical protein compare
BPHYT_RS05340 +0.5 1.8 metal-dependent phosphohydrolase compare
BPHYT_RS34185 +0.5 1.7 cold-shock protein compare
BPHYT_RS06350 +0.5 0.9 chemotaxis protein CheY compare
BPHYT_RS31460 +0.5 1.4 hypothetical protein compare
BPHYT_RS04060 +0.5 1.4 glycosyl transferase compare
BPHYT_RS27395 +0.5 1.0 N-acetyltransferase GCN5 compare
BPHYT_RS28240 +0.5 1.5 L-rhamnonate dehydratase compare
BPHYT_RS30905 +0.5 0.9 histidine kinase compare
BPHYT_RS02010 +0.5 0.9 copper homeostasis protein CutC compare
BPHYT_RS31690 +0.5 1.2 hypothetical protein compare
BPHYT_RS23895 +0.5 1.5 hypothetical protein compare
BPHYT_RS22860 +0.5 0.5 chemotaxis protein CheY compare
BPHYT_RS02965 +0.5 1.1 membrane protein compare
BPHYT_RS21425 +0.5 1.7 3-carboxy-cis,cis-muconate cycloisomerase compare
BPHYT_RS21530 +0.5 1.3 RNA polymerase subunit sigma-24 compare
BPHYT_RS06580 +0.5 1.3 carbonic anhydrase compare
BPHYT_RS27780 +0.5 2.5 acetyl-CoA synthetase compare
BPHYT_RS34275 +0.5 3.1 peptide chain release factor 3 compare
BPHYT_RS27735 +0.5 1.8 nitroreductase compare
BPHYT_RS26265 +0.5 2.0 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS12820 +0.5 1.9 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS04335 +0.5 0.6 membrane protein compare
BPHYT_RS12745 +0.5 2.5 membrane protein compare
BPHYT_RS26010 +0.5 2.2 ABC transporter substrate-binding protein compare
BPHYT_RS19980 +0.5 1.7 citrate synthase compare
BPHYT_RS29310 +0.5 1.9 oxidoreductase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in r2a control experiments