Experiment set20IT085 for Burkholderia phytofirmans PsJN

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
BPHYT_RS09515 -5.0 -3.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS13605 -4.5 -1.7 tRNA-Pro compare
BPHYT_RS18320 -4.1 -7.4 orotate phosphoribosyltransferase compare
BPHYT_RS03640 -4.0 -2.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17690 -3.6 -8.8 imidazole glycerol phosphate synthase compare
BPHYT_RS08960 -3.5 -2.2 threonine synthase compare
BPHYT_RS17685 -3.5 -8.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17675 -3.1 -3.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS03400 -3.1 -1.6 ATP-dependent DNA helicase RecG compare
BPHYT_RS16245 -3.1 -5.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS14190 -3.1 -6.9 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17680 -3.1 -4.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS16255 -3.0 -2.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16675 -3.0 -2.0 dihydroorotase compare
BPHYT_RS33840 -2.8 -6.2 amidophosphoribosyltransferase compare
BPHYT_RS06405 -2.6 -7.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS17715 -2.5 -9.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS03645 -2.4 -2.3 tRNA dimethylallyltransferase compare
BPHYT_RS16270 -2.3 -3.2 phosphoglycerate kinase compare
BPHYT_RS33645 -2.3 -7.2 homoserine kinase compare
BPHYT_RS08850 -2.3 -2.3 transcriptional regulator compare
BPHYT_RS16905 -2.2 -4.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12530 -2.2 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS06900 -2.1 -3.8 aspartate aminotransferase compare
BPHYT_RS17520 -2.1 -4.9 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS07480 -2.1 -1.8 FAD-dependent oxidoreductase compare
BPHYT_RS08955 -2.1 -4.2 homoserine dehydrogenase compare
BPHYT_RS14845 -2.0 -1.3 cysteine synthase compare
BPHYT_RS12465 -2.0 -2.5 inositol monophosphatase compare
BPHYT_RS14370 -1.9 -3.8 ribonuclease III compare
BPHYT_RS29920 -1.9 -1.2 hypothetical protein compare
BPHYT_RS17670 -1.9 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS04955 -1.9 -2.5 methionyl-tRNA synthetase compare
BPHYT_RS17700 -1.8 -2.7 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS23875 -1.8 -1.6 sugar ABC transporter ATP-binding protein compare
BPHYT_RS03725 -1.7 -1.0 serine hydroxymethyltransferase compare
BPHYT_RS07050 -1.6 -2.4 membrane protein compare
BPHYT_RS15075 -1.6 -1.8 dihydrokaempferol 4-reductase compare
BPHYT_RS17530 -1.6 -5.5 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS33920 -1.6 -6.0 type II citrate synthase compare
BPHYT_RS18910 -1.6 -1.1 FlgN compare
BPHYT_RS16735 -1.6 -5.4 phosphogluconate dehydratase compare
BPHYT_RS14755 -1.5 -2.9 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS10135 -1.5 -1.2 hypothetical protein compare
BPHYT_RS26925 -1.5 -1.4 NIPSNAP family containing protein compare
BPHYT_RS27890 -1.5 -1.8 hypothetical protein compare
BPHYT_RS08565 -1.5 -0.7 dihydroorotate dehydrogenase compare
BPHYT_RS07130 -1.5 -1.9 biopolymer transporter ExbD compare
BPHYT_RS15920 -1.5 -6.6 argininosuccinate synthase compare
BPHYT_RS12845 -1.5 -9.1 ATPase compare
BPHYT_RS13705 -1.4 -2.7 chorismate synthase compare
BPHYT_RS18265 -1.4 -2.4 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS15710 -1.4 -1.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS15670 -1.4 -6.8 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS16065 -1.3 -0.8 LacI family transcriptional regulator compare
BPHYT_RS27330 -1.3 -1.6 hypothetical protein compare
BPHYT_RS22265 -1.3 -1.0 hypothetical protein compare
BPHYT_RS20665 -1.3 -1.5 LysR family transcriptional regulator compare
BPHYT_RS29855 -1.3 -1.2 protein-tyrosine-phosphatase compare
BPHYT_RS16175 -1.3 -2.2 hemolysin D compare
BPHYT_RS13645 -1.2 -9.3 threonine--tRNA ligase compare
BPHYT_RS35675 -1.2 -2.4 short-chain dehydrogenase compare
BPHYT_RS11155 -1.2 -1.3 hypothetical protein compare
BPHYT_RS32470 -1.2 -1.9 membrane protein compare
BPHYT_RS03280 -1.2 -1.3 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS33850 -1.2 -1.8 sporulation protein compare
BPHYT_RS08130 -1.2 -1.3 transposase compare
BPHYT_RS17095 -1.2 -1.8 proline--tRNA ligase compare
BPHYT_RS02590 -1.2 -5.2 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS21995 -1.2 -4.2 (2Fe-2S)-binding protein compare
BPHYT_RS06510 -1.2 -1.8 DeoR faimly transcriptional regulator compare
BPHYT_RS11635 -1.1 -1.0 RNA polymerase subunit sigma-24 compare
BPHYT_RS02865 -1.1 -1.4 hypothetical protein compare
BPHYT_RS29915 -1.1 -2.3 GntR family transcriptional regulator compare
BPHYT_RS00150 -1.1 -2.6 DEAD/DEAH box helicase compare
BPHYT_RS36360 -1.1 -2.7 hypothetical protein compare
BPHYT_RS14915 -1.1 -5.4 phosphoserine aminotransferase compare
BPHYT_RS06075 -1.1 -3.8 hypothetical protein compare
BPHYT_RS12985 -1.1 -0.9 amino acid acetyltransferase compare
BPHYT_RS13390 -1.0 -1.0 IclR family transcriptional regulator compare
BPHYT_RS34470 -1.0 -1.5 ABC transporter compare
BPHYT_RS12990 -1.0 -2.1 iron transporter compare
BPHYT_RS25500 -1.0 -1.0 hypothetical protein compare
BPHYT_RS08765 -1.0 -0.9 ABC transporter ATP-binding protein compare
BPHYT_RS11310 -1.0 -1.4 LysR family transcriptional regulator compare
BPHYT_RS30450 -1.0 -1.0 ABC transporter permease compare
BPHYT_RS03655 -1.0 -1.7 membrane protein compare
BPHYT_RS32260 -1.0 -1.7 hypothetical protein compare
BPHYT_RS09000 -1.0 -1.2 competence protein ComE compare
BPHYT_RS34780 -1.0 -3.0 phytoene synthase compare
BPHYT_RS33580 -1.0 -3.1 geranyltranstransferase compare
BPHYT_RS16710 -1.0 -0.8 LysR family transcriptional regulator compare
BPHYT_RS23520 -1.0 -1.5 peroxidase compare
BPHYT_RS03150 -1.0 -6.1 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS04430 -1.0 -1.1 amino acid ABC transporter ATPase compare
BPHYT_RS15415 -1.0 -5.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS06080 -1.0 -2.4 endonuclease IV compare
BPHYT_RS23650 -1.0 -1.0 hypothetical protein compare
BPHYT_RS10185 -0.9 -1.9 MarR family transcriptional regulator compare
BPHYT_RS09585 -0.9 -1.5 hypothetical protein compare
BPHYT_RS12840 -0.9 -2.1 pyruvate dehydrogenase compare
BPHYT_RS06470 -0.9 -1.8 membrane protein compare
BPHYT_RS26300 -0.9 -1.0 ATP-dependent DNA ligase compare
BPHYT_RS17405 -0.9 -1.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS10475 -0.9 -1.5 mammalian cell entry protein compare
BPHYT_RS28620 -0.9 -2.2 enoyl-CoA hydratase compare
BPHYT_RS06550 -0.9 -1.3 acetolactate synthase compare
BPHYT_RS04335 -0.9 -0.7 membrane protein compare
BPHYT_RS16835 -0.9 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06985 -0.9 -3.5 fumarate hydratase compare
BPHYT_RS27370 -0.9 -1.7 CoA transferase compare
BPHYT_RS33125 -0.9 -1.1 hypothetical protein compare
BPHYT_RS20840 -0.9 -1.2 beta-lactamase compare
BPHYT_RS25395 -0.9 -1.3 3-oxoacyl-ACP reductase compare
BPHYT_RS12725 -0.9 -6.2 regulator compare
BPHYT_RS30590 -0.9 -1.5 transcriptional regulator compare
BPHYT_RS06710 -0.9 -1.0 hypothetical protein compare
BPHYT_RS15620 -0.9 -1.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS34300 -0.9 -1.2 major facilitator transporter compare
BPHYT_RS12615 -0.9 -1.0 dihydrodipicolinate synthase compare
BPHYT_RS34920 -0.9 -2.3 IclR family transcriptional regulator compare
BPHYT_RS26675 -0.9 -1.5 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS23615 -0.9 -2.4 XRE family transcriptional regulator compare
BPHYT_RS18710 -0.9 -2.1 membrane protein compare
BPHYT_RS28320 -0.8 -1.7 molecular chaperone DnaJ compare
BPHYT_RS16335 -0.8 -1.1 membrane protein compare
BPHYT_RS15915 -0.8 -4.3 ornithine carbamoyltransferase compare
BPHYT_RS10465 -0.8 -2.7 hypothetical protein compare
BPHYT_RS24580 -0.8 -1.2 hypothetical protein compare
BPHYT_RS17920 -0.8 -0.8 protein CyaY compare
BPHYT_RS36485 -0.8 -2.3 hypothetical protein compare
BPHYT_RS30315 -0.8 -1.8 LysR family transcriptional regulator compare
BPHYT_RS35400 -0.8 -2.3 ABC transporter compare
BPHYT_RS29745 -0.8 -2.1 phosphonopyruvate decarboxylase compare
BPHYT_RS07290 -0.8 -2.3 hypothetical protein compare
BPHYT_RS00725 -0.8 -2.7 hypothetical protein compare
BPHYT_RS21280 -0.8 -2.7 hypothetical protein compare
BPHYT_RS05320 -0.8 -1.2 beta-lactamase compare
BPHYT_RS04400 -0.8 -1.4 Crp/Fnr family transcriptional regulator compare
BPHYT_RS16090 -0.8 -1.2 hypothetical protein compare
BPHYT_RS07850 -0.8 -1.2 catechol 1,2-dioxygenase compare
BPHYT_RS18765 -0.8 -2.8 flagellar biosynthesis protein FliS compare
BPHYT_RS09280 -0.8 -1.0 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS10650 -0.8 -1.2 membrane protein compare
BPHYT_RS26470 -0.8 -1.0 MFS transporter compare
BPHYT_RS07095 -0.8 -1.6 LysR family transcriptional regulator compare
BPHYT_RS35275 -0.8 -1.3 acetyltransferase compare
BPHYT_RS36130 -0.8 -1.0 hypothetical protein compare
BPHYT_RS28870 -0.8 -1.8 MarR family transcriptional regulator compare
BPHYT_RS30040 -0.8 -0.9 hypothetical protein compare
BPHYT_RS20725 -0.8 -0.9 histidine kinase compare
BPHYT_RS20690 -0.8 -1.2 ABC transporter permease compare
BPHYT_RS12025 -0.8 -3.2 multidrug DMT transporter permease compare
BPHYT_RS21805 -0.8 -1.6 transcriptional regulator compare
BPHYT_RS22145 -0.8 -1.3 phosphoesterase compare
BPHYT_RS06490 -0.8 -3.0 membrane protein compare
BPHYT_RS19785 -0.8 -1.3 chemotaxis protein CheY compare
BPHYT_RS33585 -0.8 -1.4 exodeoxyribonuclease VII small subunit compare
BPHYT_RS20750 -0.8 -1.5 LacI family transcriptional regulator compare
BPHYT_RS19985 -0.8 -0.7 CoA-transferase compare
BPHYT_RS36365 -0.7 -1.6 hypothetical protein compare
BPHYT_RS12055 -0.7 -6.0 phosphoenolpyruvate synthase compare
BPHYT_RS03255 -0.7 -1.9 glutathione S-transferase compare
BPHYT_RS32775 -0.7 -1.1 MarR family transcriptional regulator compare
BPHYT_RS33845 -0.7 -1.3 bacteriocin production protein compare
BPHYT_RS18340 -0.7 -0.9 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS28205 -0.7 -4.1 ATPase compare
BPHYT_RS31125 -0.7 -1.0 hypothetical protein compare
BPHYT_RS13325 -0.7 -2.1 TetR family transcriptional regulator compare
BPHYT_RS18760 -0.7 -1.1 flagellar biosynthesis protein FliT compare
BPHYT_RS04725 -0.7 -4.3 sulfite reductase compare
BPHYT_RS07500 -0.7 -3.0 amidohydrolase compare
BPHYT_RS03900 -0.7 -0.8 phospholipid-binding protein compare
BPHYT_RS04005 -0.7 -1.2 GDP-L-fucose synthase compare
BPHYT_RS17185 -0.7 -3.9 N-acetylglutamate synthase compare
BPHYT_RS03410 -0.7 -1.3 queuine tRNA-ribosyltransferase compare
BPHYT_RS02365 -0.7 -0.9 hypothetical protein compare
BPHYT_RS07570 -0.7 -0.8 hypothetical protein compare
BPHYT_RS26005 -0.7 -1.4 MarR family transcriptional regulator compare
BPHYT_RS25545 -0.7 -1.7 hypothetical protein compare
BPHYT_RS05355 -0.7 -1.5 Crp/Fnr family transcriptional regulator compare
BPHYT_RS01530 -0.7 -1.3 penicillin-binding protein 2 compare
BPHYT_RS05065 -0.7 -1.9 DNA mismatch repair protein MutS compare
BPHYT_RS20095 -0.7 -0.8 transcriptional regulator compare
BPHYT_RS17265 -0.7 -0.9 cell division protein compare
BPHYT_RS14895 -0.7 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14505 -0.7 -0.9 membrane protein compare
BPHYT_RS30425 -0.7 -0.9 LysR family transcriptional regulator compare
BPHYT_RS08060 -0.7 -2.5 ribosome maturation factor RimP compare
BPHYT_RS29090 -0.7 -2.0 oxidoreductase compare
BPHYT_RS06555 -0.7 -2.5 ketol-acid reductoisomerase compare
BPHYT_RS08340 -0.7 -0.3 chemotaxis protein CheY compare
BPHYT_RS26340 -0.7 -2.2 cupin compare
BPHYT_RS35665 -0.7 -2.2 ABC transporter permease compare
BPHYT_RS15290 -0.7 -1.1 tRNA-Arg compare
BPHYT_RS13410 -0.7 -1.0 FAD-dependent oxidoreductase compare
BPHYT_RS28255 -0.7 -1.0 hypothetical protein compare
BPHYT_RS00770 -0.7 -0.8 conjugal transfer protein TraC compare
BPHYT_RS25670 -0.7 -2.7 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS10690 -0.7 -1.1 Rieske (2Fe-2S) protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms