Experiment set20IT085 for Burkholderia phytofirmans PsJN

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS02860 +1.7 1.8 membrane protein compare
BPHYT_RS33150 +1.7 1.8 beta-lactamase compare
BPHYT_RS30750 +1.6 3.1 GntR family transcriptional regulator compare
BPHYT_RS32240 +1.4 2.6 chromosome replication initiation inhibitor protein compare
BPHYT_RS06190 +1.4 5.4 heptosyltransferase compare
BPHYT_RS08235 +1.3 1.5 nucleoprotein, Hfg, host factor I compare
BPHYT_RS31060 +1.2 2.8 capsular polysaccharide biosynthesis protein compare
BPHYT_RS04095 +1.2 2.2 SAM-dependent methyltransferase PhcB compare
BPHYT_RS24665 +1.2 2.5 ABC transporter permease compare
BPHYT_RS02755 +1.2 1.5 cyd operon protein YbgT compare
BPHYT_RS10400 +1.2 1.8 taurine ABC transporter permease compare
BPHYT_RS02610 +1.2 5.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS25335 +1.1 1.5 hypothetical protein compare
BPHYT_RS36275 +1.1 2.0 hypothetical protein compare
BPHYT_RS29165 +1.1 2.4 hypothetical protein compare
BPHYT_RS26965 +1.1 1.6 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS31050 +1.1 1.5 epimerase compare
BPHYT_RS11960 +1.1 1.5 MarR family transcriptional regulator compare
BPHYT_RS18590 +1.1 0.8 hypothetical protein compare
BPHYT_RS25235 +1.0 3.7 LysR family transcriptional regulator compare
BPHYT_RS33385 +1.0 1.7 major facilitator superfamily protein compare
BPHYT_RS29695 +1.0 2.0 hypothetical protein compare
BPHYT_RS26390 +1.0 1.3 antibiotic resistance protein compare
BPHYT_RS33905 +1.0 2.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS22260 +1.0 1.8 hypothetical protein compare
BPHYT_RS29850 +1.0 2.1 protein tyrosine kinase compare
BPHYT_RS00690 +1.0 1.1 transcriptional regulator compare
BPHYT_RS17165 +1.0 3.6 cell division protein ZapD compare
BPHYT_RS19920 +1.0 1.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS26465 +0.9 1.3 metallophosphoesterase compare
BPHYT_RS00705 +0.9 1.6 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS25630 +0.9 1.7 glutathione S-transferase compare
BPHYT_RS08525 +0.9 1.2 SAM-dependent methyltransferase compare
BPHYT_RS36600 +0.9 1.8 lytic transglycosylase compare
BPHYT_RS14855 +0.9 1.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS05650 +0.9 1.1 hypothetical protein compare
BPHYT_RS27720 +0.9 1.8 hypothetical protein compare
BPHYT_RS30825 +0.9 2.1 extradiol dioxygenase compare
BPHYT_RS35750 +0.9 1.4 hypothetical protein compare
BPHYT_RS27495 +0.9 1.0 hypothetical protein compare
BPHYT_RS25210 +0.9 1.4 drug:proton antiporter compare
BPHYT_RS04905 +0.9 3.8 quinol oxidase compare
BPHYT_RS33965 +0.9 1.0 methylcitrate synthase compare
BPHYT_RS06105 +0.9 2.1 hypothetical protein compare
BPHYT_RS36140 +0.9 1.7 hypothetical protein compare
BPHYT_RS22910 +0.9 1.2 hypothetical protein compare
BPHYT_RS23495 +0.9 2.6 thioredoxin reductase compare
BPHYT_RS24055 +0.9 2.2 oxidoreductase compare
BPHYT_RS05895 +0.9 1.4 hypothetical protein compare
BPHYT_RS04015 +0.9 1.6 glycosyl transferase compare
BPHYT_RS25140 +0.8 3.3 hypothetical protein compare
BPHYT_RS04595 +0.8 1.9 cytoplasmic protein compare
BPHYT_RS32475 +0.8 1.9 dihydroxyacetone kinase compare
BPHYT_RS28595 +0.8 1.4 glyoxalase compare
BPHYT_RS27120 +0.8 2.1 hypothetical protein compare
BPHYT_RS25565 +0.8 2.5 hypothetical protein compare
BPHYT_RS31415 +0.8 1.8 amino acid ABC transporter permease compare
BPHYT_RS05365 +0.8 1.1 3-ketoacyl-ACP reductase compare
BPHYT_RS30085 +0.8 1.6 hypothetical protein compare
BPHYT_RS14670 +0.8 1.3 hypothetical protein compare
BPHYT_RS35310 +0.8 0.8 GCN5 family N-acetyltransferase compare
BPHYT_RS35345 +0.8 1.8 decarboxylase UbiD compare
BPHYT_RS21460 +0.8 1.6 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS21905 +0.8 0.9 IclR family transcriptional regulator compare
BPHYT_RS11540 +0.8 2.0 ureidoglycolate hydrolase compare
BPHYT_RS05515 +0.8 1.8 hypothetical protein compare
BPHYT_RS33360 +0.8 1.5 formyl-CoA transferase compare
BPHYT_RS23990 +0.8 1.3 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS34815 +0.8 1.4 ABC transporter compare
BPHYT_RS33615 +0.8 1.5 decarboxylase compare
BPHYT_RS05395 +0.7 1.3 hypothetical protein compare
BPHYT_RS07900 +0.7 1.6 hypothetical protein compare
BPHYT_RS25800 +0.7 1.1 sugar ABC transporter permease compare
BPHYT_RS24010 +0.7 2.5 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS01950 +0.7 3.5 phosphoheptose isomerase compare
BPHYT_RS10995 +0.7 1.7 GntR family transcriptional regulator compare
BPHYT_RS13885 +0.7 1.6 myo-inositol 2-dehydrogenase compare
BPHYT_RS29950 +0.7 1.7 hypothetical protein compare
BPHYT_RS17835 +0.7 2.6 protein tyrosine phosphatase compare
BPHYT_RS23420 +0.7 1.3 acetoacetyl-CoA synthase compare
BPHYT_RS25995 +0.7 2.9 2OG-Fe(II) oxygenase compare
BPHYT_RS23385 +0.7 1.6 group 1 glycosyl transferase compare
BPHYT_RS29485 +0.7 1.0 phosphonate ABC transporter ATP-binding protein compare
BPHYT_RS15145 +0.7 1.6 3-oxoacyl-ACP synthase compare
BPHYT_RS09440 +0.7 2.0 glycerate kinase compare
BPHYT_RS02660 +0.7 1.0 membrane protein compare
BPHYT_RS24045 +0.7 2.0 amino acid ABC transporter compare
BPHYT_RS26570 +0.7 0.8 5'-nucleotidase compare
BPHYT_RS11555 +0.7 1.3 allantoinase compare
BPHYT_RS23940 +0.7 0.9 GntR family transcriptional regulator compare
BPHYT_RS21330 +0.7 1.5 hypothetical protein compare
BPHYT_RS19895 +0.7 1.5 rod shape-determining protein RodA compare
BPHYT_RS11075 +0.7 1.9 membrane protein compare
BPHYT_RS27810 +0.7 1.6 nitroreductase compare
BPHYT_RS00855 +0.7 1.4 hypothetical protein compare
BPHYT_RS31625 +0.7 1.8 membrane protein compare
BPHYT_RS05730 +0.7 3.2 hypothetical protein compare
BPHYT_RS21625 +0.7 0.8 LysR family transcriptional regulator compare
BPHYT_RS20880 +0.7 1.1 polyketide cyclase compare
BPHYT_RS02045 +0.7 2.5 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS30665 +0.7 3.2 peroxidase compare
BPHYT_RS21130 +0.7 1.4 F420-dependent oxidoreductase compare
BPHYT_RS29975 +0.7 2.7 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS19325 +0.7 1.2 glycine cleavage system H protein compare
BPHYT_RS32435 +0.7 1.9 formate dehydrogenase-N subunit beta compare
BPHYT_RS27450 +0.7 2.1 alpha/beta hydrolase compare
BPHYT_RS20905 +0.7 0.9 hypothetical protein compare
BPHYT_RS00115 +0.7 1.3 acetaldehyde dehydrogenase compare
BPHYT_RS31840 +0.7 1.1 anhydrase compare
BPHYT_RS16390 +0.6 2.1 MarR family transcriptional regulator compare
BPHYT_RS13935 +0.6 1.2 mannosyltransferase compare
BPHYT_RS13345 +0.6 1.8 crotonase compare
BPHYT_RS21770 +0.6 1.9 aldehyde dehydrogenase compare
BPHYT_RS28160 +0.6 1.4 MFS transporter compare
BPHYT_RS04370 +0.6 1.0 glycosyl transferase compare
BPHYT_RS31635 +0.6 1.3 choline dehydrogenase compare
BPHYT_RS10570 +0.6 1.6 LysR family transcriptional regulator compare
BPHYT_RS23035 +0.6 1.6 hypothetical protein compare
BPHYT_RS30075 +0.6 1.9 NADPH:quinone oxidoreductase compare
BPHYT_RS32675 +0.6 1.5 2-methylcitrate dehydratase compare
BPHYT_RS01630 +0.6 1.3 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS31395 +0.6 1.3 thiamine pyrophosphate-binding protein compare
BPHYT_RS23065 +0.6 2.2 MFS transporter compare
BPHYT_RS32750 +0.6 1.1 lipoprotein compare
BPHYT_RS32690 +0.6 1.6 acyl-CoA dehydrogenase compare
BPHYT_RS15190 +0.6 0.9 acyl carrier protein compare
BPHYT_RS26040 +0.6 1.3 cysteine hydrolase compare
BPHYT_RS33030 +0.6 0.7 hypothetical protein compare
BPHYT_RS28410 +0.6 1.4 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS14550 +0.6 0.6 tRNA-Asn compare
BPHYT_RS05235 +0.6 1.1 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS20040 +0.6 1.5 amidohydrolase compare
BPHYT_RS22810 +0.6 1.2 biopolymer transporter ExbB compare
BPHYT_RS19435 +0.6 1.3 16S rRNA methyltransferase compare
BPHYT_RS22940 +0.6 1.2 pilus assembly protein TadE compare
BPHYT_RS00295 +0.6 1.3 hypothetical protein compare
BPHYT_RS09565 +0.6 1.3 acetyl-CoA acetyltransferase compare
BPHYT_RS26540 +0.6 1.1 hypothetical protein compare
BPHYT_RS06195 +0.6 1.1 membrane protein compare
BPHYT_RS13170 +0.6 1.6 ATPase compare
BPHYT_RS25075 +0.6 1.0 AraC family transcriptional regulator compare
BPHYT_RS36300 +0.6 3.7 hypothetical protein compare
BPHYT_RS34655 +0.6 1.1 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS09195 +0.6 1.3 hypothetical protein compare
BPHYT_RS22300 +0.6 1.3 hypothetical protein compare
BPHYT_RS33075 +0.6 1.6 sulfatase maturase compare
BPHYT_RS28285 +0.6 1.4 MFS transporter compare
BPHYT_RS31510 +0.6 1.5 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS05905 +0.6 0.7 hypothetical protein compare
BPHYT_RS15010 +0.6 2.3 cation transporter compare
BPHYT_RS22125 +0.6 1.1 hypothetical protein compare
BPHYT_RS09880 +0.6 1.4 MFS transporter compare
BPHYT_RS33805 +0.6 0.7 hypothetical protein compare
BPHYT_RS29185 +0.6 1.2 sugar ABC transporter permease compare
BPHYT_RS03065 +0.6 1.3 LuxR family transcriptional regulator compare
BPHYT_RS01230 +0.6 2.2 DNA-binding protein compare
BPHYT_RS02880 +0.6 0.7 ATP-dependent protease compare
BPHYT_RS13320 +0.6 0.8 allantoate amidohydrolase compare
BPHYT_RS06730 +0.6 1.7 MaoC family dehydratase compare
BPHYT_RS11235 +0.6 0.8 hypothetical protein compare
BPHYT_RS10175 +0.6 1.1 membrane protein compare
BPHYT_RS33130 +0.6 1.2 transcriptional regulator compare
BPHYT_RS36175 +0.6 1.2 hypothetical protein compare
BPHYT_RS33160 +0.6 1.7 hypothetical protein compare
BPHYT_RS03685 +0.6 2.1 Tol system periplasmic component YbgF compare
BPHYT_RS04670 +0.6 1.6 sulfurtransferase compare
BPHYT_RS33570 +0.6 1.8 GTP cyclohydrolase compare
BPHYT_RS17085 +0.6 2.3 hypoxanthine phosphoribosyltransferase compare
BPHYT_RS25440 +0.6 1.3 alanine dehydrogenase compare
BPHYT_RS32845 +0.6 1.9 ABC transporter substrate-binding protein compare
BPHYT_RS27805 +0.6 2.4 RNA-metabolising metallo-beta-lactamase compare
BPHYT_RS25845 +0.6 0.8 RND transporter MFP subunit compare
BPHYT_RS14060 +0.6 0.9 peptidase M23 compare
BPHYT_RS26645 +0.6 2.2 ABC transporter substrate-binding protein compare
BPHYT_RS21340 +0.6 2.2 2OG-Fe(II) oxygenase compare
BPHYT_RS07475 +0.6 1.2 nitrate reductase compare
BPHYT_RS27735 +0.6 1.8 nitroreductase compare
BPHYT_RS14050 +0.6 1.5 UDP pyrophosphate phosphatase compare
BPHYT_RS31460 +0.6 1.6 hypothetical protein compare
BPHYT_RS32150 +0.6 1.4 hypothetical protein compare
BPHYT_RS09860 +0.5 0.8 pilus assembly protein PilP compare
BPHYT_RS04890 +0.5 0.9 cobalamin biosynthesis protein CobD compare
BPHYT_RS08150 +0.5 0.6 membrane protein compare
BPHYT_RS23160 +0.5 1.8 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
BPHYT_RS06390 +0.5 1.4 ribosome-associated protein IOJAP compare
BPHYT_RS23890 +0.5 2.4 MFS transporter compare
BPHYT_RS09465 +0.5 0.7 transcriptional regulator compare
BPHYT_RS15360 +0.5 1.3 hypothetical protein compare
BPHYT_RS13555 +0.5 1.3 acyl-CoA dehydrogenase compare
BPHYT_RS26670 +0.5 2.3 Cobalt-precorrin-5B C(1)-methyltransferase compare
BPHYT_RS26125 +0.5 2.1 ABC transporter substrate-binding protein compare
BPHYT_RS11190 +0.5 1.9 PrkA family serine protein kinase compare
BPHYT_RS29005 +0.5 1.5 transporter compare
BPHYT_RS11680 +0.5 1.1 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS15890 +0.5 0.8 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS21485 +0.5 0.7 hypothetical protein compare
BPHYT_RS10395 +0.5 0.8 sulfonate ABC transporter compare
BPHYT_RS29500 +0.5 1.5 hypothetical protein compare
BPHYT_RS07325 +0.5 0.5 GntR family transcriptional regulator compare
BPHYT_RS28660 +0.5 0.7 polyvinylalcohol dehydrogenase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms