Experiment set20IT084 for Burkholderia phytofirmans PsJN

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17685 -3.9 -8.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS16245 -3.7 -6.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS08960 -3.6 -2.2 threonine synthase compare
BPHYT_RS03640 -3.5 -3.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS17700 -3.5 -6.3 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS18320 -3.5 -7.4 orotate phosphoribosyltransferase compare
BPHYT_RS17690 -3.3 -11.6 imidazole glycerol phosphate synthase compare
BPHYT_RS17680 -3.2 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06405 -3.2 -6.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS16255 -3.2 -3.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS16675 -3.1 -2.1 dihydroorotase compare
BPHYT_RS33840 -3.1 -7.0 amidophosphoribosyltransferase compare
BPHYT_RS17715 -2.9 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS16905 -2.9 -5.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33645 -2.8 -5.9 homoserine kinase compare
BPHYT_RS12465 -2.7 -4.0 inositol monophosphatase compare
BPHYT_RS09515 -2.6 -3.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS12530 -2.5 -10.4 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS06900 -2.4 -6.2 aspartate aminotransferase compare
BPHYT_RS17675 -2.3 -3.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS17670 -2.2 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS14190 -2.2 -6.5 carbamoyl phosphate synthase large subunit compare
BPHYT_RS23875 -2.1 -1.7 sugar ABC transporter ATP-binding protein compare
BPHYT_RS14845 -2.0 -1.4 cysteine synthase compare
BPHYT_RS17095 -2.0 -3.5 proline--tRNA ligase compare
BPHYT_RS01625 -1.9 -1.3 chemotaxis protein CheY compare
BPHYT_RS03410 -1.8 -3.2 queuine tRNA-ribosyltransferase compare
BPHYT_RS04955 -1.8 -2.6 methionyl-tRNA synthetase compare
BPHYT_RS08955 -1.7 -3.3 homoserine dehydrogenase compare
BPHYT_RS28470 -1.6 -2.3 hypothetical protein compare
BPHYT_RS14195 -1.6 -2.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS12845 -1.6 -10.9 ATPase compare
BPHYT_RS02975 -1.6 -2.1 membrane protein compare
BPHYT_RS13450 -1.6 -2.2 GntR family transcriptional regulator compare
BPHYT_RS16270 -1.6 -3.1 phosphoglycerate kinase compare
BPHYT_RS08565 -1.5 -0.8 dihydroorotate dehydrogenase compare
BPHYT_RS35770 -1.5 -1.5 glyoxalase compare
BPHYT_RS33765 -1.5 -1.4 membrane protein compare
BPHYT_RS12985 -1.5 -1.5 amino acid acetyltransferase compare
BPHYT_RS03215 -1.5 -2.3 TetR family transcriptional regulator compare
BPHYT_RS16735 -1.5 -3.6 phosphogluconate dehydratase compare
BPHYT_RS16835 -1.4 -6.1 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS23650 -1.4 -1.3 hypothetical protein compare
BPHYT_RS33920 -1.4 -4.7 type II citrate synthase compare
BPHYT_RS15670 -1.4 -4.8 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS08850 -1.4 -1.6 transcriptional regulator compare
BPHYT_RS17405 -1.3 -1.3 indole-3-glycerol phosphate synthase compare
BPHYT_RS12840 -1.3 -2.5 pyruvate dehydrogenase compare
BPHYT_RS06685 -1.3 -1.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS16340 -1.3 -4.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS33850 -1.3 -1.8 sporulation protein compare
BPHYT_RS07050 -1.3 -2.0 membrane protein compare
BPHYT_RS03150 -1.3 -7.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS13645 -1.3 -9.7 threonine--tRNA ligase compare
BPHYT_RS15915 -1.2 -6.1 ornithine carbamoyltransferase compare
BPHYT_RS01505 -1.2 -2.1 7-cyano-7-deazaguanine reductase compare
BPHYT_RS27370 -1.2 -1.7 CoA transferase compare
BPHYT_RS15415 -1.2 -6.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS30425 -1.2 -1.5 LysR family transcriptional regulator compare
BPHYT_RS08665 -1.2 -1.2 hypothetical protein compare
BPHYT_RS34470 -1.2 -2.1 ABC transporter compare
BPHYT_RS17530 -1.2 -4.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS15920 -1.2 -6.3 argininosuccinate synthase compare
BPHYT_RS27850 -1.2 -1.9 hemerythrin compare
BPHYT_RS13200 -1.2 -1.7 molybdopterin binding oxidoreductase compare
BPHYT_RS28930 -1.1 -1.2 chromosome partitioning protein ParA compare
BPHYT_RS16710 -1.1 -1.0 LysR family transcriptional regulator compare
BPHYT_RS06985 -1.1 -3.6 fumarate hydratase compare
BPHYT_RS17240 -1.1 -1.2 cell division protein FtsW compare
BPHYT_RS14755 -1.1 -1.7 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS28575 -1.1 -1.1 transcriptional regulator compare
BPHYT_RS12615 -1.1 -1.2 dihydrodipicolinate synthase compare
BPHYT_RS32260 -1.1 -1.4 hypothetical protein compare
BPHYT_RS26435 -1.1 -1.1 hypothetical protein compare
BPHYT_RS14915 -1.1 -3.9 phosphoserine aminotransferase compare
BPHYT_RS33845 -1.1 -1.9 bacteriocin production protein compare
BPHYT_RS06075 -1.0 -5.2 hypothetical protein compare
BPHYT_RS28370 -1.0 -1.3 peroxidase compare
BPHYT_RS32495 -1.0 -2.3 ABC transporter compare
BPHYT_RS04730 -1.0 -4.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS00815 -1.0 -1.0 hypothetical protein compare
BPHYT_RS29855 -1.0 -1.1 protein-tyrosine-phosphatase compare
BPHYT_RS05330 -1.0 -2.2 phosphohydrolase compare
BPHYT_RS27890 -1.0 -1.5 hypothetical protein compare
BPHYT_RS29100 -1.0 -1.6 ketosteroid isomerase compare
BPHYT_RS33990 -1.0 -1.0 ATPase compare
BPHYT_RS24590 -1.0 -1.1 DeoR faimly transcriptional regulator compare
BPHYT_RS07595 -1.0 -1.7 membrane protein compare
BPHYT_RS24955 -1.0 -1.8 cytochrome C peroxidase compare
BPHYT_RS14585 -1.0 -1.5 hypothetical protein compare
BPHYT_RS23270 -1.0 -1.2 enoyl-CoA hydratase compare
BPHYT_RS36385 -1.0 -0.7 TetR family transcriptional regulator compare
BPHYT_RS04005 -1.0 -2.1 GDP-L-fucose synthase compare
BPHYT_RS16175 -1.0 -1.9 hemolysin D compare
BPHYT_RS17520 -1.0 -2.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS23520 -0.9 -1.8 peroxidase compare
BPHYT_RS25470 -0.9 -1.1 alkylhydroperoxidase compare
BPHYT_RS03400 -0.9 -1.0 ATP-dependent DNA helicase RecG compare
BPHYT_RS02590 -0.9 -3.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS25335 -0.9 -0.8 hypothetical protein compare
BPHYT_RS10135 -0.9 -0.9 hypothetical protein compare
BPHYT_RS28360 -0.9 -1.3 carboxymuconolactone decarboxylase compare
BPHYT_RS12510 -0.9 -1.4 RNA-binding protein compare
BPHYT_RS31830 -0.9 -2.5 hypothetical protein compare
BPHYT_RS06375 -0.9 -3.2 ribonuclease compare
BPHYT_RS34920 -0.9 -1.6 IclR family transcriptional regulator compare
BPHYT_RS03875 -0.9 -1.8 dehydrogenase compare
BPHYT_RS09000 -0.9 -1.1 competence protein ComE compare
BPHYT_RS18255 -0.9 -1.6 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS13420 -0.9 -2.1 hypothetical protein compare
BPHYT_RS18340 -0.9 -1.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS07760 -0.8 -1.4 diguanylate phosphodiesterase compare
BPHYT_RS06390 -0.8 -2.1 ribosome-associated protein IOJAP compare
BPHYT_RS02005 -0.8 -1.3 diguanylate phosphodiesterase compare
BPHYT_RS36365 -0.8 -1.7 hypothetical protein compare
BPHYT_RS12280 -0.8 -1.1 RNA helicase compare
BPHYT_RS04430 -0.8 -1.5 amino acid ABC transporter ATPase compare
BPHYT_RS17890 -0.8 -0.9 shikimate kinase compare
BPHYT_RS28620 -0.8 -2.1 enoyl-CoA hydratase compare
BPHYT_RS11955 -0.8 -1.4 hemolysin D compare
BPHYT_RS33110 -0.8 -1.4 chloroperoxidase compare
BPHYT_RS05065 -0.8 -1.6 DNA mismatch repair protein MutS compare
BPHYT_RS12055 -0.8 -6.0 phosphoenolpyruvate synthase compare
BPHYT_RS14450 -0.8 -3.2 hypothetical protein compare
BPHYT_RS24975 -0.8 -2.3 RNA polymerase sigma24 factor compare
BPHYT_RS08305 -0.8 -1.6 membrane protein compare
BPHYT_RS12725 -0.8 -5.8 regulator compare
BPHYT_RS06470 -0.8 -1.2 membrane protein compare
BPHYT_RS04725 -0.8 -4.0 sulfite reductase compare
BPHYT_RS14400 -0.8 -1.5 anti-sigma factor compare
BPHYT_RS12155 -0.8 -3.8 RNA-binding protein S4 compare
BPHYT_RS33580 -0.8 -2.7 geranyltranstransferase compare
BPHYT_RS28330 -0.8 -2.2 transcriptional regulator compare
BPHYT_RS20880 -0.8 -0.9 polyketide cyclase compare
BPHYT_RS14245 -0.8 -1.2 membrane protein compare
BPHYT_RS24630 -0.8 -1.3 (2Fe-2S)-binding protein compare
BPHYT_RS00900 -0.8 -1.4 beta-lactamase compare
BPHYT_RS25395 -0.8 -1.6 3-oxoacyl-ACP reductase compare
BPHYT_RS06105 -0.8 -1.1 hypothetical protein compare
BPHYT_RS01955 -0.8 -2.1 hypothetical protein compare
BPHYT_RS26740 -0.8 -1.3 hypothetical protein compare
BPHYT_RS09100 -0.8 -1.9 stationary phase survival protein SurE compare
BPHYT_RS01425 -0.8 -2.2 3-phosphoglycerate dehydrogenase compare
BPHYT_RS14485 -0.8 -2.1 ribonuclease E compare
BPHYT_RS25450 -0.8 -1.2 membrane protein compare
BPHYT_RS02155 -0.8 -2.1 dithiobiotin synthetase compare
BPHYT_RS20970 -0.8 -1.2 hypothetical protein compare
BPHYT_RS07860 -0.8 -1.8 benzoate 1,2-dioxygenase subunit beta compare
BPHYT_RS08125 -0.8 -4.3 ATPase compare
BPHYT_RS02150 -0.8 -1.6 biotin synthase compare
BPHYT_RS15305 -0.7 -5.6 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS20665 -0.7 -1.1 LysR family transcriptional regulator compare
BPHYT_RS31255 -0.7 -1.0 cytochrome B561 compare
BPHYT_RS21415 -0.7 -2.2 3-oxoadipate CoA-transferase subunit A compare
BPHYT_RS04400 -0.7 -1.3 Crp/Fnr family transcriptional regulator compare
BPHYT_RS34900 -0.7 -1.6 hypothetical protein compare
BPHYT_RS14900 -0.7 -1.8 prephenate dehydrogenase compare
BPHYT_RS01485 -0.7 -0.7 histidine kinase compare
BPHYT_RS14895 -0.7 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS07110 -0.7 -1.3 LysR family transcriptional regulator compare
BPHYT_RS12990 -0.7 -1.4 iron transporter compare
BPHYT_RS07835 -0.7 -1.8 muconolactone delta-isomerase compare
BPHYT_RS04875 -0.7 -1.9 alpha-ribazole phosphatase compare
BPHYT_RS07080 -0.7 -1.7 glutathione S-transferase compare
BPHYT_RS11635 -0.7 -0.8 RNA polymerase subunit sigma-24 compare
BPHYT_RS07850 -0.7 -1.9 catechol 1,2-dioxygenase compare
BPHYT_RS19130 -0.7 -2.3 acetyltransferase compare
BPHYT_RS36185 -0.7 -1.9 hypothetical protein compare
BPHYT_RS09330 -0.7 -4.0 phytoene synthase compare
BPHYT_RS03685 -0.7 -1.8 Tol system periplasmic component YbgF compare
BPHYT_RS17185 -0.7 -3.3 N-acetylglutamate synthase compare
BPHYT_RS28900 -0.7 -2.8 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BPHYT_RS36150 -0.7 -1.5 hypothetical protein compare
BPHYT_RS08165 -0.7 -1.4 pilus assembly protein TadE compare
BPHYT_RS05025 -0.7 -2.3 sugar ABC transporter substrate-binding protein compare
BPHYT_RS11980 -0.7 -1.4 LysR family transcriptional regulator compare
BPHYT_RS05155 -0.7 -2.6 acetyltransferase GCN5 compare
BPHYT_RS04370 -0.7 -0.8 glycosyl transferase compare
BPHYT_RS29085 -0.7 -1.1 LysR family transcriptional regulator compare
BPHYT_RS16085 -0.7 -2.3 DeoR faimly transcriptional regulator compare
BPHYT_RS22525 -0.7 -1.8 dioxygenase compare
BPHYT_RS12025 -0.7 -4.0 multidrug DMT transporter permease compare
BPHYT_RS23310 -0.7 -2.1 hypothetical protein compare
BPHYT_RS23430 -0.7 -1.5 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS03645 -0.7 -1.4 tRNA dimethylallyltransferase compare
BPHYT_RS03730 -0.7 -1.6 transcriptional repressor NrdR compare
BPHYT_RS26750 -0.7 -1.6 aldolase compare
BPHYT_RS23175 -0.7 -1.8 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
BPHYT_RS05320 -0.7 -0.9 beta-lactamase compare
BPHYT_RS06270 -0.7 -1.6 glyoxalase compare
BPHYT_RS16555 -0.7 -3.4 cation transporter compare
BPHYT_RS09545 -0.7 -1.1 peptide methionine sulfoxide reductase compare
BPHYT_RS33690 -0.7 -1.4 molybdate ABC transporter permease compare
BPHYT_RS08235 -0.7 -0.5 nucleoprotein, Hfg, host factor I compare
BPHYT_RS20220 -0.7 -0.9 antibiotic synthesis protein MbtH compare
BPHYT_RS36355 -0.7 -1.1 hypothetical protein compare
BPHYT_RS05905 -0.7 -0.4 hypothetical protein compare
BPHYT_RS33355 -0.7 -1.4 oxalyl-CoA decarboxylase compare
BPHYT_RS30220 -0.7 -1.7 hypothetical protein compare
BPHYT_RS24925 -0.7 -1.0 cytochrome O ubiquinol oxidase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms