Experiment set20IT073 for Pseudomonas stutzeri RCH2

Compare to:

No vitamins, timepoint 2

200 most important genes:

  gene name fitness t score description  
Psest_0152 -4.5 -4.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_0508 -4.5 -3.1 gamma-glutamyl phosphate reductase compare
Psest_1895 -4.3 -3.0 Signal transduction histidine kinase compare
Psest_0326 -4.3 -8.2 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0062 -4.2 -4.1 tryptophan synthase, alpha subunit compare
Psest_1115 -4.2 -2.8 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_1509 -4.1 -2.9 quinolinate synthetase complex, A subunit compare
Psest_0153 -4.1 -4.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0537 -4.1 -2.8 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_3322 -4.1 -10.2 TIGR02099 family protein compare
Psest_1897 -4.1 -4.0 ABC-type sugar transport systems, permease components compare
Psest_3647 -4.1 -2.8 Indole-3-glycerol phosphate synthase compare
Psest_0716 -4.0 -2.7 Protein of unknown function (DUF3094). compare
Psest_0536 -4.0 -2.8 thiamine-phosphate pyrophosphorylase compare
Psest_0850 -4.0 -3.9 glucokinase, proteobacterial type compare
Psest_0325 -4.0 -2.7 Putative threonine efflux protein compare
Psest_3650 -4.0 -5.4 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3226 -3.9 -1.5 Predicted membrane protein compare
Psest_0279 -3.9 -2.7 methionine biosynthesis protein MetW compare
Psest_0267 -3.9 -5.3 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_1896 -3.8 -5.0 ABC-type sugar transport system, periplasmic component compare
Psest_3864 -3.8 -6.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_0852 -3.8 -2.6 glucose-6-phosphate 1-dehydrogenase compare
Psest_0845 -3.8 -1.4 hypothetical protein compare
Psest_0063 -3.8 -4.5 tryptophan synthase, beta subunit compare
Psest_2578 -3.8 -6.2 O-succinylhomoserine sulfhydrylase compare
Psest_0849 -3.7 -5.7 6-phosphogluconate dehydratase compare
Psest_3944 -3.7 -2.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_1898 -3.7 -2.5 ABC-type sugar transport system, permease component compare
Psest_3298 -3.7 -3.6 histidinol dehydrogenase compare
Psest_0266 -3.7 -2.5 thiamine biosynthesis protein ThiS compare
Psest_3648 -3.7 -2.5 anthranilate phosphoribosyltransferase compare
Psest_1974 -3.6 -3.4 integration host factor, alpha subunit compare
Psest_3384 -3.6 -2.5 glutamate 5-kinase compare
Psest_3299 -3.6 -5.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_3866 -3.6 -10.6 threonine ammonia-lyase, biosynthetic, long form compare
Psest_2584 -3.5 -2.4 Phosphoribosylanthranilate isomerase compare
Psest_1452 -3.5 -3.4 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_0855 -3.5 -2.4 NAD-dependent aldehyde dehydrogenases compare
Psest_3297 -3.4 -6.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0411 -3.4 -8.5 biotin synthetase compare
Psest_4086 -3.4 -8.7 Transcriptional regulator compare
Psest_0280 -3.4 -7.9 homoserine O-acetyltransferase compare
Psest_4085 -3.3 -11.7 Biotin carboxylase compare
Psest_2590 -3.3 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_3649 -3.3 -3.2 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1473 -3.2 -2.2 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_3818 -3.2 -4.8 endoribonuclease L-PSP, putative compare
Psest_0477 -3.2 -5.7 thiamine biosynthesis protein ThiC compare
Psest_4084 -3.2 -10.2 oxaloacetate decarboxylase alpha subunit compare
Psest_0155 -3.1 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_0687 -3.0 -2.9 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_2329 -3.0 -11.6 Transcriptional regulator compare
Psest_1899 -2.9 -5.1 ABC-type sugar transport systems, ATPase components compare
Psest_0718 -2.9 -2.0 nicotinate-nucleotide pyrophosphorylase compare
Psest_2591 -2.8 -1.9 3-isopropylmalate dehydratase, large subunit compare
Psest_3190 -2.8 -2.7 pyruvate kinase compare
Psest_1660 -2.7 -1.8 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0697 -2.6 -2.4 ribosomal protein L9 compare
Psest_3391 -2.5 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_1920 -2.5 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1772 -2.5 -2.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_0313 -2.4 -3.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_2988 -2.4 -3.6 aspartate kinase, monofunctional class compare
Psest_4088 -2.4 -2.3 Transcriptional regulators compare
Psest_1001 -2.3 -3.4 hypothetical protein compare
Psest_2589 -2.3 -6.2 3-isopropylmalate dehydrogenase compare
Psest_3943 -2.3 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2718 -2.3 -1.9 hypothetical protein compare
Psest_1994 -2.3 -2.6 Amidases related to nicotinamidase compare
Psest_3531 -2.3 -1.6 Peptidase propeptide and YPEB domain. compare
Psest_1037 -2.3 -2.1 acetolactate synthase, small subunit compare
Psest_0413 -2.2 -5.7 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_3496 -2.2 -2.2 Predicted metal-binding protein compare
Psest_0164 -2.2 -0.8 Glutaredoxin, GrxC family compare
Psest_0412 -2.2 -8.1 8-amino-7-oxononanoate synthase compare
Psest_0306 -2.1 -11.5 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_3904 -2.0 -1.8 hypothetical protein compare
Psest_1082 -2.0 -2.4 Enoyl-CoA hydratase/carnithine racemase compare
Psest_0715 -2.0 -10.9 NADH dehydrogenase, FAD-containing subunit compare
Psest_3101 -1.9 -11.9 L-aspartate oxidase compare
Psest_2561 -1.9 -1.3 hypothetical protein compare
Psest_1602 -1.9 -2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_2531 -1.9 -9.0 cytochrome c oxidase accessory protein FixG compare
Psest_0853 -1.8 -3.1 6-phosphogluconolactonase compare
Psest_0414 -1.8 -3.6 biotin biosynthesis protein BioC compare
Psest_3092 -1.8 -2.0 ribonuclease III, bacterial compare
Psest_1463 -1.8 -0.9 SufE protein probably involved in Fe-S center assembly compare
Psest_0094 -1.8 -3.0 Uncharacterized enzyme of phosphonate metabolism compare
Psest_0359 -1.8 -2.8 Transcriptional regulators compare
Psest_1686 -1.8 -4.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_1814 -1.8 -10.5 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_0922 -1.7 -3.7 alkylhydroperoxidase AhpD family core domain compare
Psest_0170 -1.7 -5.6 5,10-methenyltetrahydrofolate synthetase compare
Psest_2520 -1.7 -1.7 Predicted SAM-dependent methyltransferase compare
Psest_2585 -1.7 -1.1 pseudouridylate synthase I compare
Psest_2975 -1.6 -2.8 tRNA_Arg_CCT compare
Psest_4128 -1.6 -1.7 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_3565 -1.6 -1.6 hypothetical protein compare
Psest_2967 -1.6 -1.6 flagellar basal-body rod protein FlgC compare
Psest_1054 -1.6 -6.3 Diaminopimelate decarboxylase compare
Psest_2743 -1.6 -3.4 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_3998 -1.6 -1.1 glutamate--cysteine ligase compare
Psest_1805 -1.6 -1.9 integration host factor, beta subunit compare
Psest_0415 -1.6 -3.4 dethiobiotin synthase compare
Psest_3711 -1.5 -10.7 Glutamate synthase domain 2 compare
Psest_4298 -1.5 -0.9 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_2712 -1.5 -3.6 Surface lipoprotein compare
Psest_0999 -1.5 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_2968 -1.5 -5.2 flagellar basal-body rod protein FlgB compare
Psest_4183 -1.5 -1.6 PilZ domain. compare
Psest_0655 -1.5 -2.1 Chemotaxis signal transduction protein compare
Psest_0466 -1.5 -2.9 Lipopolysaccharide kinase (Kdo/WaaP) family. compare
Psest_3710 -1.5 -9.4 glutamate synthase small subunit family protein, proteobacterial compare
Psest_1295 -1.5 -1.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3449 -1.4 -1.8 DJ-1 family protein compare
Psest_0740 -1.4 -1.6 Transcriptional regulator compare
Psest_1870 -1.4 -1.5 Transcriptional regulators compare
Psest_0998 -1.4 -2.3 poly(A) polymerase compare
Psest_1663 -1.4 -2.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2757 -1.4 -1.1 hypothetical protein compare
Psest_3456 -1.4 -1.6 RNA polymerase sigma factor, sigma-70 family compare
Psest_2379 -1.4 -7.1 PAS domain S-box compare
Psest_2579 -1.4 -0.9 amidophosphoribosyltransferase compare
Psest_0097 -1.4 -1.1 phosphonates metabolism transcriptional regulator PhnF compare
Psest_3159 -1.4 -1.8 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2532 -1.3 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0958 -1.3 -2.6 Oligoketide cyclase/lipid transport protein compare
Psest_2711 -1.3 -1.8 PilZ domain. compare
Psest_0259 -1.3 -1.1 cell division ATP-binding protein FtsE compare
Psest_0141 -1.3 -3.4 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Psest_0064 -1.3 -2.7 Transcriptional regulator compare
Psest_1511 -1.3 -3.0 Predicted redox protein, regulator of disulfide bond formation compare
Psest_2809 -1.3 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_2110 -1.3 -2.6 hypothetical protein compare
Psest_4209 -1.3 -2.3 Uncharacterized conserved small protein compare
Psest_1888 -1.3 -0.9 Sua5/YciO/YrdC/YwlC family protein compare
Psest_3832 -1.3 -2.1 hypothetical protein compare
Psest_1012 -1.3 -1.6 Signal transduction histidine kinase compare
Psest_0327 -1.2 -3.8 Transcriptional regulator compare
Psest_1000 -1.2 -7.1 PAS domain S-box compare
Psest_2066 -1.2 -1.3 ABC-type uncharacterized transport system, permease component compare
Psest_3862 -1.2 -6.7 phosphoenolpyruvate-protein phosphotransferase compare
Psest_3306 -1.2 -3.2 conserved hypothetical integral membrane protein compare
Psest_1520 -1.2 -3.0 hypothetical protein compare
Psest_1506 -1.2 -3.1 queuosine biosynthesis protein QueC compare
Psest_0993 -1.2 -5.4 Glucose-6-phosphate isomerase compare
Psest_1204 -1.2 -1.9 Transcriptional regulators compare
Psest_1884 -1.2 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3767 -1.2 -2.5 tyrosine recombinase XerC compare
Psest_3304 -1.2 -3.2 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_4003 -1.2 -3.3 TIGR00153 family protein compare
Psest_0193 -1.2 -1.1 conserved hypothetical protein compare
Psest_3178 -1.1 -1.9 formyltetrahydrofolate deformylase compare
Psest_1472 -1.1 -4.6 Protein of unknown function (DUF3108). compare
Psest_4191 -1.1 -1.3 Transcriptional regulator compare
Psest_3214 -1.1 -5.3 phosphate acetyltransferase compare
Psest_1625 -1.1 -3.2 hypothetical protein compare
Psest_3697 -1.1 -1.0 Outer membrane lipoprotein carrier protein LolA. compare
Psest_3213 -1.1 -3.9 acetate kinase compare
Psest_2923 -1.1 -1.6 hypothetical protein compare
Psest_1230 -1.1 -1.5 Uncharacterized protein conserved in bacteria compare
Psest_0969 -1.1 -1.1 transcription elongation factor GreA compare
Psest_1505 -1.1 -1.2 Organic radical activating enzymes compare
Psest_3117 -1.1 -1.8 electron transport complex, RnfABCDGE type, E subunit compare
Psest_1489 -1.1 -2.8 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_3323 -1.1 -2.6 ribonuclease, Rne/Rng family compare
Psest_3843 -1.1 -4.8 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2778 -1.1 -2.2 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0501 -1.1 -2.1 Predicted nucleoside-diphosphate-sugar epimerases compare
Psest_2527 -1.0 -3.2 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_3780 -1.0 -2.5 Transcriptional regulator compare
Psest_3828 -1.0 -1.0 zinc-binding alcohol dehydrogenase family protein compare
Psest_1951 -1.0 -1.3 Uncharacterized protein conserved in bacteria compare
Psest_4103 -1.0 -1.2 AraC-type DNA-binding domain-containing proteins compare
Psest_0409 -1.0 -2.1 Putative homoserine kinase type II (protein kinase fold) compare
Psest_1031 -1.0 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_1238 -1.0 -4.0 Predicted membrane protein/domain compare
Psest_4211 -1.0 -2.2 conserverd hypothetical protein compare
Psest_2067 -1.0 -0.8 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3400 -1.0 -0.7 Copper resistance protein D. compare
Psest_1703 -1.0 -4.6 Uncharacterized protein conserved in bacteria compare
Psest_2343 -1.0 -2.1 Mg-dependent DNase compare
Psest_3307 -1.0 -3.5 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_3474 -1.0 -2.2 Short-chain dehydrogenases of various substrate specificities compare
Psest_2253 -1.0 -1.8 small redox-active disulfide protein 2 compare
Psest_2148 -1.0 -2.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_4134 -1.0 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_2437 -1.0 -1.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) (from data) compare
Psest_3013 -1.0 -2.0 cobyrinic acid a,c-diamide synthase compare
Psest_3270 -0.9 -1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_2312 -0.9 -4.3 Small-conductance mechanosensitive channel compare
Psest_1611 -0.9 -2.3 Beta-lactamase class D compare
Psest_1117 -0.9 -2.4 Lipid A 3-O-deacylase (PagL). compare
Psest_1277 -0.9 -5.5 2-isopropylmalate synthase, yeast type compare
Psest_3790 -0.9 -3.3 Cytochrome c5 compare
Psest_3305 -0.9 -3.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_3421 -0.9 -1.9 hypothetical protein compare
Psest_2062 -0.9 -2.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2714 -0.9 -1.0 7-cyano-7-deazaguanine reductase compare


Specific Phenotypes

For 14 genes in this experiment