Experiment set20IT072 for Pseudomonas stutzeri RCH2

Compare to:

No vitamins, timepoint 1

200 most important genes:

  gene name fitness t score description  
Psest_0508 -4.6 -3.2 gamma-glutamyl phosphate reductase compare
Psest_0062 -4.3 -5.9 tryptophan synthase, alpha subunit compare
Psest_1896 -4.3 -5.8 ABC-type sugar transport system, periplasmic component compare
Psest_3647 -4.2 -2.9 Indole-3-glycerol phosphate synthase compare
Psest_3650 -4.1 -6.2 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_3226 -4.0 -1.5 Predicted membrane protein compare
Psest_0326 -4.0 -10.9 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0152 -4.0 -5.3 Imidazoleglycerol-phosphate dehydratase compare
Psest_0153 -3.9 -6.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_0852 -3.9 -2.7 glucose-6-phosphate 1-dehydrogenase compare
Psest_0063 -3.9 -4.6 tryptophan synthase, beta subunit compare
Psest_1897 -3.8 -8.9 ABC-type sugar transport systems, permease components compare
Psest_0279 -3.8 -3.7 methionine biosynthesis protein MetW compare
Psest_3299 -3.8 -5.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_0325 -3.7 -7.1 Putative threonine efflux protein compare
Psest_3648 -3.6 -4.3 anthranilate phosphoribosyltransferase compare
Psest_3866 -3.6 -10.6 threonine ammonia-lyase, biosynthetic, long form compare
Psest_1895 -3.6 -5.4 Signal transduction histidine kinase compare
Psest_3384 -3.6 -4.2 glutamate 5-kinase compare
Psest_3944 -3.6 -3.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3864 -3.6 -9.4 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3298 -3.5 -4.8 histidinol dehydrogenase compare
Psest_0280 -3.5 -9.2 homoserine O-acetyltransferase compare
Psest_2578 -3.5 -8.6 O-succinylhomoserine sulfhydrylase compare
Psest_1452 -3.4 -6.6 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase compare
Psest_1899 -3.4 -4.0 ABC-type sugar transport systems, ATPase components compare
Psest_2590 -3.4 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_1898 -3.3 -6.4 ABC-type sugar transport system, permease component compare
Psest_0537 -3.3 -3.0 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
Psest_0849 -3.2 -10.2 6-phosphogluconate dehydratase compare
Psest_2584 -3.2 -3.1 Phosphoribosylanthranilate isomerase compare
Psest_0687 -3.2 -2.2 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1509 -3.1 -7.6 quinolinate synthetase complex, A subunit compare
Psest_3531 -3.0 -1.9 Peptidase propeptide and YPEB domain. compare
Psest_0718 -3.0 -2.1 nicotinate-nucleotide pyrophosphorylase compare
Psest_2718 -3.0 -1.8 hypothetical protein compare
Psest_3818 -3.0 -6.1 endoribonuclease L-PSP, putative compare
Psest_2591 -2.9 -2.0 3-isopropylmalate dehydratase, large subunit compare
Psest_0155 -2.9 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1974 -2.8 -4.1 integration host factor, alpha subunit compare
Psest_0850 -2.8 -8.7 glucokinase, proteobacterial type compare
Psest_3322 -2.8 -16.0 TIGR02099 family protein compare
Psest_3649 -2.8 -5.7 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_1473 -2.7 -4.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0115 -2.7 -1.7 Predicted integral membrane protein compare
Psest_0855 -2.7 -4.7 NAD-dependent aldehyde dehydrogenases compare
Psest_3297 -2.6 -9.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_0313 -2.5 -4.1 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0266 -2.5 -5.5 thiamine biosynthesis protein ThiS compare
Psest_0411 -2.4 -9.8 biotin synthetase compare
Psest_0536 -2.4 -5.9 thiamine-phosphate pyrophosphorylase compare
Psest_3190 -2.4 -4.4 pyruvate kinase compare
Psest_4134 -2.4 -3.1 Uncharacterized protein conserved in bacteria compare
Psest_0697 -2.3 -3.0 ribosomal protein L9 compare
Psest_0853 -2.3 -3.4 6-phosphogluconolactonase compare
Psest_0845 -2.2 -1.4 hypothetical protein compare
Psest_4086 -2.2 -9.6 Transcriptional regulator compare
Psest_1994 -2.2 -3.2 Amidases related to nicotinamidase compare
Psest_4085 -2.2 -11.8 Biotin carboxylase compare
Psest_2538 -2.2 -2.2 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_4084 -2.1 -11.5 oxaloacetate decarboxylase alpha subunit compare
Psest_1115 -2.1 -2.5 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
Psest_0413 -2.1 -6.1 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Psest_2589 -2.1 -7.2 3-isopropylmalate dehydrogenase compare
Psest_0267 -2.1 -8.0 Uncharacterized enzyme of thiazole biosynthesis compare
Psest_2329 -2.0 -10.3 Transcriptional regulator compare
Psest_3766 -2.0 -2.9 Uncharacterized protein conserved in bacteria compare
Psest_2988 -2.0 -4.4 aspartate kinase, monofunctional class compare
Psest_3943 -2.0 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
Psest_0306 -2.0 -11.5 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Psest_4088 -1.9 -2.7 Transcriptional regulators compare
Psest_0477 -1.8 -8.6 thiamine biosynthesis protein ThiC compare
Psest_1037 -1.8 -2.3 acetolactate synthase, small subunit compare
Psest_1660 -1.8 -1.6 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0412 -1.8 -7.7 8-amino-7-oxononanoate synthase compare
Psest_0716 -1.8 -2.6 Protein of unknown function (DUF3094). compare
Psest_1870 -1.8 -1.7 Transcriptional regulators compare
Psest_1679 -1.7 -2.1 ribonuclease, Rne/Rng family compare
Psest_3391 -1.7 -3.0 Uncharacterized protein conserved in bacteria compare
Psest_4128 -1.7 -2.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_1888 -1.7 -1.1 Sua5/YciO/YrdC/YwlC family protein compare
Psest_2566 -1.6 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_3998 -1.6 -2.2 glutamate--cysteine ligase compare
Psest_0999 -1.6 -1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0316 -1.6 -3.2 Cytochrome c556 compare
Psest_2520 -1.6 -1.7 Predicted SAM-dependent methyltransferase compare
Psest_3904 -1.6 -1.9 hypothetical protein compare
Psest_2067 -1.5 -1.3 ABC-type oligopeptide transport system, periplasmic component compare
Psest_3092 -1.5 -1.9 ribonuclease III, bacterial compare
Psest_1772 -1.5 -2.8 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1602 -1.5 -2.1 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_1511 -1.5 -3.3 Predicted redox protein, regulator of disulfide bond formation compare
Psest_1805 -1.5 -2.0 integration host factor, beta subunit compare
Psest_2579 -1.5 -1.0 amidophosphoribosyltransferase compare
Psest_2532 -1.5 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_3101 -1.5 -9.8 L-aspartate oxidase compare
Psest_2726 -1.4 -2.2 Rhodanese-related sulfurtransferase compare
Psest_2766 -1.4 -1.2 hypothetical protein compare
Psest_3828 -1.4 -1.3 zinc-binding alcohol dehydrogenase family protein compare
Psest_2561 -1.4 -1.1 hypothetical protein compare
Psest_1951 -1.4 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1295 -1.4 -2.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1230 -1.4 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_2975 -1.4 -2.7 tRNA_Arg_CCT compare
Psest_2527 -1.3 -3.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_1505 -1.3 -1.6 Organic radical activating enzymes compare
Psest_2743 -1.3 -3.4 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Psest_4142 -1.3 -1.1 hypothetical protein compare
Psest_0170 -1.3 -4.9 5,10-methenyltetrahydrofolate synthetase compare
Psest_3159 -1.3 -2.7 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2651 -1.3 -1.9 DNA topoisomerase I, bacterial compare
Psest_4095 -1.3 -1.7 Uncharacterized protein conserved in bacteria compare
Psest_4170 -1.3 -1.0 Flagellar biosynthesis/type III secretory pathway protein compare
Psest_1686 -1.3 -3.4 fatty acid/phospholipid synthesis protein PlsX compare
Psest_2531 -1.2 -7.1 cytochrome c oxidase accessory protein FixG compare
Psest_0193 -1.2 -1.1 conserved hypothetical protein compare
Psest_1012 -1.2 -1.7 Signal transduction histidine kinase compare
Psest_4340 -1.2 -3.7 Protein of unknown function (DUF3617). compare
Psest_3456 -1.2 -1.5 RNA polymerase sigma factor, sigma-70 family compare
Psest_1518 -1.2 -1.9 tRNA_Ser_CGA compare
Psest_2253 -1.2 -1.7 small redox-active disulfide protein 2 compare
Psest_2711 -1.1 -1.2 PilZ domain. compare
Psest_0114 -1.1 -1.9 RNA polymerase sigma factor, sigma-70 family compare
Psest_3767 -1.1 -2.6 tyrosine recombinase XerC compare
Psest_2062 -1.1 -2.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_2648 -1.1 -1.9 hypothetical protein compare
Psest_1768 -1.1 -3.7 thiopurine S-methyltransferase, Se/Te detoxification family compare
Psest_2379 -1.1 -6.2 PAS domain S-box compare
Psest_0958 -1.1 -3.0 Oligoketide cyclase/lipid transport protein compare
Psest_3700 -1.1 -1.1 hypothetical protein compare
Psest_1597 -1.1 -3.3 Protein of unknown function (DUF2933). compare
Psest_1242 -1.1 -1.5 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_2757 -1.1 -0.9 hypothetical protein compare
Psest_0409 -1.1 -2.5 Putative homoserine kinase type II (protein kinase fold) compare
Psest_1762 -1.1 -1.6 cytochrome c-type biogenesis protein CcmI compare
Psest_2967 -1.1 -0.9 flagellar basal-body rod protein FlgC compare
Psest_3048 -1.1 -1.5 hypothetical protein compare
Psest_2872 -1.1 -1.4 protein RecA compare
Psest_0715 -1.0 -7.0 NADH dehydrogenase, FAD-containing subunit compare
Psest_1791 -1.0 -2.9 ABC-type transport system, involved in lipoprotein release, permease component compare
Psest_0414 -1.0 -2.6 biotin biosynthesis protein BioC compare
Psest_4405 -1.0 -1.0 hypothetical protein compare
Psest_3937 -1.0 -1.5 ATP-dependent protease HslVU, ATPase subunit compare
Psest_2794 -1.0 -2.7 Predicted permease, DMT superfamily compare
Psest_0959 -1.0 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_4183 -1.0 -1.5 PilZ domain. compare
Psest_3177 -1.0 -1.4 hypothetical protein compare
Psest_0064 -1.0 -2.5 Transcriptional regulator compare
Psest_3178 -1.0 -1.8 formyltetrahydrofolate deformylase compare
Psest_2850 -1.0 -0.8 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_0740 -1.0 -1.5 Transcriptional regulator compare
Psest_2545 -1.0 -1.8 recombination protein RecR compare
Psest_4191 -1.0 -1.5 Transcriptional regulator compare
Psest_1001 -1.0 -1.8 hypothetical protein compare
Psest_1677 -1.0 -1.0 Protein-tyrosine-phosphatase compare
Psest_2809 -1.0 -1.6 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Psest_3496 -1.0 -0.8 Predicted metal-binding protein compare
Psest_0922 -1.0 -1.4 alkylhydroperoxidase AhpD family core domain compare
Psest_2445 -1.0 -2.7 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Psest_1814 -1.0 -6.8 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_2268 -1.0 -1.9 Alcohol dehydrogenase, class IV compare
Psest_1920 -1.0 -0.7 Uncharacterized protein conserved in bacteria compare
Psest_0520 -1.0 -0.5 hypothetical protein compare
Psest_3790 -0.9 -3.6 Cytochrome c5 compare
Psest_3502 -0.9 -1.7 flavoprotein, HI0933 family/uncharacterized flavoprotein, PP_4765 family compare
Psest_1000 -0.9 -5.6 PAS domain S-box compare
Psest_2513 -0.9 -2.3 Predicted membrane protein compare
Psest_3047 -0.9 -0.7 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Psest_1663 -0.9 -1.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2585 -0.9 -0.7 pseudouridylate synthase I compare
Psest_3306 -0.9 -3.1 conserved hypothetical integral membrane protein compare
Psest_2448 -0.9 -2.6 AraC-type DNA-binding domain-containing proteins compare
Psest_3303 -0.9 -2.8 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2415 -0.9 -2.8 TolQ protein compare
Psest_0299 -0.9 -2.5 Chemotaxis signal transduction protein compare
Psest_1472 -0.9 -4.0 Protein of unknown function (DUF3108). compare
Psest_4163 -0.9 -1.5 hypothetical protein compare
Psest_0327 -0.9 -3.5 Transcriptional regulator compare
Psest_1463 -0.9 -0.6 SufE protein probably involved in Fe-S center assembly compare
Psest_3087 -0.9 -2.4 Transcriptional regulator compare
Psest_3206 -0.9 -2.8 Uncharacterized protein conserved in bacteria compare
Psest_3761 -0.9 -1.8 Transcription elongation factor compare
Psest_1489 -0.9 -2.3 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases compare
Psest_3323 -0.9 -3.0 ribonuclease, Rne/Rng family compare
Psest_4298 -0.9 -0.6 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
Psest_3213 -0.9 -3.4 acetate kinase compare
Psest_2624 -0.9 -2.1 hypothetical protein compare
Psest_0191 -0.9 -0.6 PAS domain S-box compare
Psest_3803 -0.9 -0.7 DNA repair protein radc compare
Psest_1498 -0.9 -1.7 tol-pal system-associated acyl-CoA thioesterase compare
Psest_4280 -0.9 -2.0 ABC-type spermidine/putrescine transport system, permease component II compare
Psest_2923 -0.9 -1.2 hypothetical protein compare
Psest_3991 -0.9 -1.4 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
Psest_0872 -0.9 -0.8 Helix-turn-helix. compare
Psest_3878 -0.9 -1.6 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Psest_2359 -0.9 -3.3 Predicted permeases compare
Psest_0487 -0.9 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_2240 -0.9 -1.1 hypothetical protein compare
Psest_0708 -0.9 -0.7 outer membrane assembly lipoprotein YfiO compare
Psest_0722 -0.9 -2.7 Predicted ATPase compare


Specific Phenotypes

For 12 genes in this experiment