Experiment set20IT071 for Pseudomonas stutzeri RCH2

Compare to:

With vitamins, timepoint 2

200 most important genes:

  gene name fitness t score description  
Psest_2967 -5.3 -3.6 flagellar basal-body rod protein FlgC compare
Psest_0152 -5.0 -3.4 Imidazoleglycerol-phosphate dehydratase compare
Psest_2975 -5.0 -2.9 tRNA_Arg_CCT compare
Psest_0062 -4.6 -3.2 tryptophan synthase, alpha subunit compare
Psest_0508 -4.6 -3.2 gamma-glutamyl phosphate reductase compare
Psest_1895 -4.4 -4.3 Signal transduction histidine kinase compare
Psest_0153 -4.3 -3.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_1897 -4.2 -5.0 ABC-type sugar transport systems, permease components compare
Psest_3647 -4.2 -2.9 Indole-3-glycerol phosphate synthase compare
Psest_3866 -4.2 -4.1 threonine ammonia-lyase, biosynthetic, long form compare
Psest_3650 -4.2 -5.7 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_2578 -4.2 -2.9 O-succinylhomoserine sulfhydrylase compare
Psest_0326 -4.2 -9.7 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0716 -4.2 -2.8 Protein of unknown function (DUF3094). compare
Psest_3864 -4.1 -3.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3226 -4.0 -1.4 Predicted membrane protein compare
Psest_0279 -4.0 -2.8 methionine biosynthesis protein MetW compare
Psest_0325 -4.0 -4.7 Putative threonine efflux protein compare
Psest_2968 -4.0 -6.0 flagellar basal-body rod protein FlgB compare
Psest_3322 -3.9 -12.4 TIGR02099 family protein compare
Psest_1974 -3.9 -3.7 integration host factor, alpha subunit compare
Psest_0852 -3.9 -2.7 glucose-6-phosphate 1-dehydrogenase compare
Psest_1898 -3.8 -2.7 ABC-type sugar transport system, permease component compare
Psest_3944 -3.8 -2.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_3299 -3.8 -4.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_4085 -3.8 -10.9 Biotin carboxylase compare
Psest_3648 -3.8 -2.6 anthranilate phosphoribosyltransferase compare
Psest_0849 -3.8 -5.2 6-phosphogluconate dehydratase compare
Psest_3384 -3.7 -2.6 glutamate 5-kinase compare
Psest_0850 -3.7 -6.2 glucokinase, proteobacterial type compare
Psest_0280 -3.7 -6.2 homoserine O-acetyltransferase compare
Psest_0063 -3.7 -6.6 tryptophan synthase, beta subunit compare
Psest_4086 -3.6 -9.6 Transcriptional regulator compare
Psest_3297 -3.6 -8.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_2584 -3.6 -2.5 Phosphoribosylanthranilate isomerase compare
Psest_0855 -3.6 -2.5 NAD-dependent aldehyde dehydrogenases compare
Psest_3818 -3.5 -4.2 endoribonuclease L-PSP, putative compare
Psest_3298 -3.5 -4.8 histidinol dehydrogenase compare
Psest_3649 -3.5 -2.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_4084 -3.4 -10.7 oxaloacetate decarboxylase alpha subunit compare
Psest_2590 -3.4 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_0155 -3.2 -2.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1473 -3.2 -3.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0687 -3.0 -3.6 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_1896 -3.0 -2.7 ABC-type sugar transport system, periplasmic component compare
Psest_3146 -2.9 -2.3 hypothetical protein compare
Psest_2591 -2.9 -2.0 3-isopropylmalate dehydratase, large subunit compare
Psest_0853 -2.9 -2.0 6-phosphogluconolactonase compare
Psest_3943 -2.9 -2.0 Phosphoribosyl-AMP cyclohydrolase compare
Psest_1888 -2.8 -1.3 Sua5/YciO/YrdC/YwlC family protein compare
Psest_1660 -2.8 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit compare
Psest_0313 -2.8 -2.7 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_0715 -2.7 -12.5 NADH dehydrogenase, FAD-containing subunit compare
Psest_2329 -2.7 -12.5 Transcriptional regulator compare
Psest_4088 -2.7 -1.8 Transcriptional regulators compare
Psest_1037 -2.6 -1.8 acetolactate synthase, small subunit compare
Psest_1814 -2.6 -8.9 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_1772 -2.6 -2.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_1472 -2.6 -6.3 Protein of unknown function (DUF3108). compare
Psest_2718 -2.4 -1.9 hypothetical protein compare
Psest_2988 -2.4 -4.1 aspartate kinase, monofunctional class compare
Psest_0327 -2.3 -5.9 Transcriptional regulator compare
Psest_2712 -2.3 -3.7 Surface lipoprotein compare
Psest_2589 -2.3 -6.8 3-isopropylmalate dehydrogenase compare
Psest_1899 -2.3 -4.7 ABC-type sugar transport systems, ATPase components compare
Psest_3190 -2.2 -3.0 pyruvate kinase compare
Psest_2983 -2.2 -2.8 hypothetical protein compare
Psest_1686 -2.2 -4.2 fatty acid/phospholipid synthesis protein PlsX compare
Psest_3092 -2.1 -2.0 ribonuclease III, bacterial compare
Psest_1994 -2.1 -3.4 Amidases related to nicotinamidase compare
Psest_1277 -2.0 -9.4 2-isopropylmalate synthase, yeast type compare
Psest_3400 -2.0 -1.3 Copper resistance protein D. compare
Psest_3700 -1.9 -1.5 hypothetical protein compare
Psest_3391 -1.8 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_1640 -1.8 -9.4 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_2585 -1.8 -1.2 pseudouridylate synthase I compare
Psest_1001 -1.8 -3.4 hypothetical protein compare
Psest_1505 -1.8 -1.9 Organic radical activating enzymes compare
Psest_0359 -1.8 -2.7 Transcriptional regulators compare
Psest_4142 -1.8 -1.5 hypothetical protein compare
Psest_4103 -1.7 -1.6 AraC-type DNA-binding domain-containing proteins compare
Psest_1492 -1.7 -7.1 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_3998 -1.7 -1.2 glutamate--cysteine ligase compare
Psest_1480 -1.7 -2.5 arsenate reductase (glutaredoxin) compare
Psest_3039 -1.7 -1.2 periplasmic nitrate reductase, NapE protein compare
Psest_0209 -1.7 -2.6 membrane protein AbrB duplication compare
Psest_2101 -1.7 -2.1 hypothetical protein compare
Psest_1496 -1.6 -0.9 Holliday junction DNA helicase, RuvA subunit compare
Psest_1805 -1.6 -1.9 integration host factor, beta subunit compare
Psest_4196 -1.6 -3.5 Type II secretory pathway, component PulK compare
Psest_1920 -1.6 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_0999 -1.6 -1.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_0655 -1.6 -2.0 Chemotaxis signal transduction protein compare
Psest_0958 -1.6 -2.3 Oligoketide cyclase/lipid transport protein compare
Psest_3304 -1.6 -4.0 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2726 -1.6 -1.7 Rhodanese-related sulfurtransferase compare
Psest_3862 -1.5 -9.4 phosphoenolpyruvate-protein phosphotransferase compare
Psest_0170 -1.5 -5.4 5,10-methenyltetrahydrofolate synthetase compare
Psest_2872 -1.5 -2.1 protein RecA compare
Psest_1295 -1.5 -1.5 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3843 -1.5 -7.1 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_2531 -1.5 -8.4 cytochrome c oxidase accessory protein FixG compare
Psest_1000 -1.5 -8.6 PAS domain S-box compare
Psest_0292 -1.5 -3.2 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_2532 -1.5 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_1118 -1.5 -2.8 Predicted Fe-S-cluster oxidoreductase compare
Psest_2579 -1.5 -1.0 amidophosphoribosyltransferase compare
Psest_2646 -1.5 -2.0 SOS regulatory protein LexA compare
Psest_3767 -1.4 -2.6 tyrosine recombinase XerC compare
Psest_3191 -1.4 -2.2 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_0697 -1.4 -2.6 ribosomal protein L9 compare
Psest_4363 -1.4 -5.4 ATPases involved in chromosome partitioning compare
Psest_1679 -1.4 -1.1 ribonuclease, Rne/Rng family compare
Psest_4043 -1.4 -2.9 Site-specific recombinases, DNA invertase Pin homologs compare
Psest_3303 -1.4 -3.9 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_3790 -1.4 -4.4 Cytochrome c5 compare
Psest_0805 -1.4 -2.3 hypothetical protein compare
Psest_0993 -1.4 -6.1 Glucose-6-phosphate isomerase compare
Psest_1642 -1.4 -3.9 Uncharacterized protein conserved in bacteria compare
Psest_2225 -1.4 -2.3 Diacylglycerol kinase compare
Psest_3710 -1.4 -9.3 glutamate synthase small subunit family protein, proteobacterial compare
Psest_1457 -1.3 -1.0 FOG: Ankyrin repeat compare
Psest_0558 -1.3 -0.8 urease, beta subunit compare
Psest_1870 -1.3 -1.4 Transcriptional regulators compare
Psest_3960 -1.3 -1.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
Psest_1843 -1.3 -1.4 Uncharacterized Fe-S protein compare
Psest_3305 -1.3 -5.0 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Psest_0998 -1.3 -2.5 poly(A) polymerase compare
Psest_3213 -1.3 -4.6 acetate kinase compare
Psest_1599 -1.3 -3.3 heavy metal sensor kinase compare
Psest_4219 -1.3 -1.2 DNA polymerase I compare
Psest_2566 -1.3 -0.8 Uncharacterized protein conserved in bacteria compare
Psest_2527 -1.2 -3.6 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2491 -1.2 -4.4 succinyl-CoA synthetase, beta subunit compare
Psest_1884 -1.2 -1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_0870 -1.2 -6.6 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_1204 -1.2 -1.7 Transcriptional regulators compare
Psest_0719 -1.2 -3.8 Uncharacterized protein conserved in bacteria compare
Psest_3306 -1.2 -3.2 conserved hypothetical integral membrane protein compare
Psest_4003 -1.2 -3.1 TIGR00153 family protein compare
Psest_1824 -1.2 -2.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_3307 -1.2 -4.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_4128 -1.2 -1.3 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2153 -1.2 -3.7 formate dehydrogenase, gamma subunit compare
Psest_2651 -1.2 -1.9 DNA topoisomerase I, bacterial compare
Psest_2288 -1.2 -2.4 trigger factor compare
Psest_2379 -1.2 -6.2 PAS domain S-box compare
Psest_1582 -1.2 -3.1 Protein of unknown function (DUF3087). compare
Psest_2110 -1.2 -2.4 hypothetical protein compare
Psest_3860 -1.2 -1.4 Predicted permeases compare
Psest_2894 -1.2 -2.2 addiction module antidote protein, HigA family compare
Psest_1012 -1.2 -1.8 Signal transduction histidine kinase compare
Psest_0848 -1.2 -2.1 hypothetical protein compare
Psest_0082 -1.1 -2.2 Domain of unknown function (DUF892). compare
Psest_2645 -1.1 -2.6 Transcriptional regulator compare
Psest_3159 -1.1 -2.9 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_3711 -1.1 -8.2 Glutamate synthase domain 2 compare
Psest_3317 -1.1 -3.2 Phosphotransferase System HPr (HPr) Family compare
Psest_0737 -1.1 -0.8 Cu(I)-responsive transcriptional regulator compare
Psest_4134 -1.1 -1.8 Uncharacterized protein conserved in bacteria compare
Psest_3478 -1.1 -1.0 Cytochrome B561 compare
Psest_1602 -1.1 -1.5 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3500 -1.1 -2.3 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_1506 -1.1 -3.2 queuosine biosynthesis protein QueC compare
Psest_3449 -1.1 -1.7 DJ-1 family protein compare
Psest_1371 -1.0 -1.9 hypothetical protein compare
Psest_0021 -1.0 -2.6 ribosomal RNA small subunit methyltransferase RsmB compare
Psest_1185 -1.0 -1.8 heavy metal response regulator compare
Psest_0494 -1.0 -4.6 Rhodanese-related sulfurtransferase compare
Psest_1716 -1.0 -2.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Psest_3270 -1.0 -1.6 probable S-adenosylmethionine-dependent methyltransferase, YraL family compare
Psest_0208 -1.0 -5.1 Uncharacterized protein conserved in bacteria compare
Psest_1466 -1.0 -2.6 transcriptional regulator, Spx/MgsR family compare
Psest_3735 -1.0 -0.7 uncharacterized domain 1 compare
Psest_0732 -1.0 -2.1 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Psest_1083 -1.0 -5.0 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Psest_1960 -1.0 -2.4 Bacterial protein of unknown function (DUF903). compare
Psest_3447 -1.0 -1.0 Uncharacterized MobA-related protein compare
Psest_3045 -1.0 -1.0 Cold shock proteins compare
Psest_4121 -1.0 -2.9 Zonula occludens toxin compare
Psest_0520 -1.0 -0.5 hypothetical protein compare
Psest_3426 -1.0 -2.5 Uncharacterized protein conserved in bacteria compare
Psest_1080 -1.0 -4.4 Acetyl/propionyl-CoA carboxylase, alpha subunit compare
Psest_3824 -1.0 -2.8 Predicted membrane protein compare
Psest_0175 -1.0 -3.1 Xaa-Pro aminopeptidase compare
Psest_1431 -1.0 -2.2 hypothetical protein compare
Psest_1663 -0.9 -1.9 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_1979 -0.9 -2.7 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_3373 -0.9 -3.9 Tfp pilus assembly protein PilX compare
Psest_1082 -0.9 -1.3 Enoyl-CoA hydratase/carnithine racemase compare
Psest_2850 -0.9 -0.9 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1625 -0.9 -1.7 hypothetical protein compare
Psest_3962 -0.9 -0.9 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED compare
Psest_3323 -0.9 -2.5 ribonuclease, Rne/Rng family compare
Psest_2766 -0.9 -0.8 hypothetical protein compare
Psest_1595 -0.9 -0.9 Copper chaperone compare
Psest_1456 -0.9 -1.6 Protein of unknown function (DUF2892). compare
Psest_1677 -0.9 -1.9 Protein-tyrosine-phosphatase compare
Psest_2238 -0.9 -1.8 hypothetical protein compare
Psest_2414 -0.9 -2.3 TolR protein compare


Specific Phenotypes

For 13 genes in this experiment