Experiment set20IT070 for Pseudomonas stutzeri RCH2

Compare to:

With vitamins, timepoint 1

200 most important genes:

  gene name fitness t score description  
Psest_0508 -4.5 -3.1 gamma-glutamyl phosphate reductase compare
Psest_0062 -4.2 -5.7 tryptophan synthase, alpha subunit compare
Psest_0152 -4.1 -4.8 Imidazoleglycerol-phosphate dehydratase compare
Psest_0153 -4.1 -4.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Psest_3647 -4.1 -2.8 Indole-3-glycerol phosphate synthase compare
Psest_3866 -4.0 -7.1 threonine ammonia-lyase, biosynthetic, long form compare
Psest_1895 -3.9 -4.6 Signal transduction histidine kinase compare
Psest_3650 -3.9 -6.5 anthranilate synthase component I, non-proteobacterial lineages compare
Psest_0852 -3.8 -2.6 glucose-6-phosphate 1-dehydrogenase compare
Psest_1897 -3.7 -9.2 ABC-type sugar transport systems, permease components compare
Psest_0279 -3.7 -3.6 methionine biosynthesis protein MetW compare
Psest_3648 -3.7 -2.5 anthranilate phosphoribosyltransferase compare
Psest_3299 -3.6 -5.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Psest_2578 -3.6 -6.5 O-succinylhomoserine sulfhydrylase compare
Psest_3864 -3.6 -7.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
Psest_3384 -3.5 -3.4 glutamate 5-kinase compare
Psest_0280 -3.5 -6.7 homoserine O-acetyltransferase compare
Psest_3944 -3.4 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Psest_2584 -3.4 -2.4 Phosphoribosylanthranilate isomerase compare
Psest_0325 -3.4 -7.2 Putative threonine efflux protein compare
Psest_0326 -3.4 -12.4 Taurine catabolism dioxygenase TauD, TfdA family. compare
Psest_0063 -3.3 -7.3 tryptophan synthase, beta subunit compare
Psest_2590 -3.3 -1.2 3-isopropylmalate dehydratase, small subunit compare
Psest_3298 -3.2 -6.1 histidinol dehydrogenase compare
Psest_3649 -3.2 -3.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Psest_0855 -3.2 -4.3 NAD-dependent aldehyde dehydrogenases compare
Psest_1898 -3.1 -6.9 ABC-type sugar transport system, permease component compare
Psest_0849 -3.1 -9.9 6-phosphogluconate dehydratase compare
Psest_0850 -3.1 -7.9 glucokinase, proteobacterial type compare
Psest_0687 -3.0 -3.5 ATP phosphoribosyltransferase, regulatory subunit compare
Psest_3226 -2.9 -1.5 Predicted membrane protein compare
Psest_0155 -2.9 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Psest_1473 -2.8 -3.8 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
Psest_0853 -2.8 -1.9 6-phosphogluconolactonase compare
Psest_2025 -2.8 -1.4 cold shock domain protein CspD compare
Psest_2591 -2.8 -1.9 3-isopropylmalate dehydratase, large subunit compare
Psest_1896 -2.8 -2.4 ABC-type sugar transport system, periplasmic component compare
Psest_3943 -2.8 -1.9 Phosphoribosyl-AMP cyclohydrolase compare
Psest_2101 -2.7 -2.5 hypothetical protein compare
Psest_0313 -2.6 -2.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
Psest_4085 -2.6 -12.1 Biotin carboxylase compare
Psest_3818 -2.6 -5.1 endoribonuclease L-PSP, putative compare
Psest_1686 -2.6 -3.0 fatty acid/phospholipid synthesis protein PlsX compare
Psest_0209 -2.5 -2.7 membrane protein AbrB duplication compare
Psest_2589 -2.5 -5.0 3-isopropylmalate dehydrogenase compare
Psest_3322 -2.4 -14.5 TIGR02099 family protein compare
Psest_2967 -2.3 -2.0 flagellar basal-body rod protein FlgC compare
Psest_4084 -2.3 -10.8 oxaloacetate decarboxylase alpha subunit compare
Psest_1899 -2.3 -4.7 ABC-type sugar transport systems, ATPase components compare
Psest_3190 -2.2 -4.1 pyruvate kinase compare
Psest_1322 -2.2 -1.8 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases compare
Psest_2726 -2.2 -2.5 Rhodanese-related sulfurtransferase compare
Psest_3449 -2.1 -2.8 DJ-1 family protein compare
Psest_2225 -2.1 -3.8 Diacylglycerol kinase compare
Psest_2566 -2.1 -1.0 Uncharacterized protein conserved in bacteria compare
Psest_1772 -2.1 -3.3 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_2850 -2.0 -1.4 Multisubunit Na+/H+ antiporter, MnhC subunit compare
Psest_1888 -2.0 -1.2 Sua5/YciO/YrdC/YwlC family protein compare
Psest_4086 -2.0 -8.7 Transcriptional regulator compare
Psest_1814 -2.0 -10.7 pseudaminic acid biosynthesis N-acetyl transferase compare
Psest_4103 -1.9 -1.8 AraC-type DNA-binding domain-containing proteins compare
Psest_2561 -1.8 -1.2 hypothetical protein compare
Psest_2718 -1.8 -1.5 hypothetical protein compare
Psest_2983 -1.8 -2.5 hypothetical protein compare
Psest_1679 -1.8 -1.8 ribonuclease, Rne/Rng family compare
Psest_1118 -1.7 -2.7 Predicted Fe-S-cluster oxidoreductase compare
Psest_0805 -1.7 -2.5 hypothetical protein compare
Psest_0327 -1.7 -4.1 Transcriptional regulator compare
Psest_1884 -1.7 -2.2 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Psest_3297 -1.7 -6.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Psest_3700 -1.7 -1.4 hypothetical protein compare
Psest_2329 -1.7 -9.7 Transcriptional regulator compare
Psest_3317 -1.7 -3.1 Phosphotransferase System HPr (HPr) Family compare
Psest_0716 -1.7 -2.5 Protein of unknown function (DUF3094). compare
Psest_4134 -1.6 -2.0 Uncharacterized protein conserved in bacteria compare
Psest_3064 -1.6 -1.9 hypothetical protein compare
Psest_1466 -1.6 -2.7 transcriptional regulator, Spx/MgsR family compare
Psest_1640 -1.6 -9.3 (p)ppGpp synthetase, RelA/SpoT family compare
Psest_1472 -1.6 -5.4 Protein of unknown function (DUF3108). compare
Psest_2716 -1.6 -2.5 ABC-type multidrug transport system, ATPase component compare
Psest_4310 -1.5 -1.7 ABC-type Mn2+/Zn2+ transport systems, permease components compare
Psest_0999 -1.5 -1.0 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
Psest_3998 -1.5 -2.3 glutamate--cysteine ligase compare
Psest_2968 -1.5 -6.5 flagellar basal-body rod protein FlgB compare
Psest_2724 -1.5 -2.5 hypothetical protein compare
Psest_1974 -1.4 -2.7 integration host factor, alpha subunit compare
Psest_3146 -1.4 -1.7 hypothetical protein compare
Psest_1480 -1.4 -2.3 arsenate reductase (glutaredoxin) compare
Psest_1282 -1.4 -2.2 Amidases related to nicotinamidase compare
Psest_0316 -1.4 -1.5 Cytochrome c556 compare
Psest_2975 -1.4 -2.6 tRNA_Arg_CCT compare
Psest_0259 -1.4 -1.3 cell division ATP-binding protein FtsE compare
Psest_1870 -1.4 -1.4 Transcriptional regulators compare
Psest_0993 -1.4 -5.9 Glucose-6-phosphate isomerase compare
Psest_2527 -1.4 -3.1 cytochrome c oxidase, cbb3-type, subunit I compare
Psest_2122 -1.4 -1.3 Parvulin-like peptidyl-prolyl isomerase compare
Psest_0655 -1.4 -1.2 Chemotaxis signal transduction protein compare
Psest_3391 -1.4 -1.2 Uncharacterized protein conserved in bacteria compare
Psest_1498 -1.4 -1.6 tol-pal system-associated acyl-CoA thioesterase compare
Psest_2423 -1.4 -2.6 Uncharacterized conserved protein compare
Psest_2538 -1.3 -1.5 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
Psest_1012 -1.3 -1.3 Signal transduction histidine kinase compare
Psest_3812 -1.3 -2.1 Uncharacterized protein conserved in bacteria compare
Psest_4316 -1.3 -2.4 ABC-type metal ion transport system, periplasmic component/surface antigen compare
Psest_2579 -1.3 -1.3 amidophosphoribosyltransferase compare
Psest_1994 -1.3 -2.6 Amidases related to nicotinamidase compare
Psest_3304 -1.3 -3.5 ABC-type transport system involved in resistance to organic solvents, auxiliary component compare
Psest_2872 -1.3 -1.7 protein RecA compare
Psest_4363 -1.3 -4.3 ATPases involved in chromosome partitioning compare
Psest_1295 -1.3 -2.0 Aspartate/tyrosine/aromatic aminotransferase compare
Psest_3531 -1.3 -1.1 Peptidase propeptide and YPEB domain. compare
Psest_4003 -1.3 -3.4 TIGR00153 family protein compare
Psest_4196 -1.3 -2.8 Type II secretory pathway, component PulK compare
Psest_1366 -1.2 -1.2 hypothetical protein compare
Psest_3084 -1.2 -1.0 methyltransferase, putative compare
Psest_3843 -1.2 -5.7 4-hydroxybenzoate synthetase (chorismate lyase) compare
Psest_0848 -1.2 -2.7 hypothetical protein compare
Psest_3070 -1.2 -1.6 3-oxoadipyl-CoA thiolase compare
Psest_2585 -1.2 -0.9 pseudouridylate synthase I compare
Psest_2714 -1.2 -1.1 7-cyano-7-deazaguanine reductase compare
Psest_3177 -1.2 -1.7 hypothetical protein compare
Psest_1306 -1.2 -1.2 hypothetical protein compare
Psest_0060 -1.2 -1.7 Predicted Fe-S protein compare
Psest_0747 -1.2 -3.8 Putative GTPases (G3E family) compare
Psest_1592 -1.2 -2.5 hypothetical protein compare
Psest_1824 -1.2 -2.0 Sugar transferases involved in lipopolysaccharide synthesis compare
Psest_0715 -1.2 -7.1 NADH dehydrogenase, FAD-containing subunit compare
Psest_2532 -1.1 -1.6 Uncharacterized protein conserved in bacteria compare
Psest_0078 -1.1 -0.7 hypothetical protein compare
Psest_0379 -1.1 -3.1 Galactose mutarotase and related enzymes compare
Psest_0485 -1.1 -1.9 clan AA aspartic protease, TIGR02281 family compare
Psest_2434 -1.1 -1.8 Protein of unknown function (DUF2892). compare
Psest_2110 -1.1 -1.7 hypothetical protein compare
Psest_4348 -1.1 -2.9 Heme oxygenase compare
Psest_0292 -1.1 -2.6 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase compare
Psest_3197 -1.1 -2.9 hypothetical protein compare
Psest_2320 -1.0 -2.8 2-methylcitrate synthase/citrate synthase II compare
Psest_1037 -1.0 -1.5 acetolactate synthase, small subunit compare
Psest_0082 -1.0 -1.8 Domain of unknown function (DUF892). compare
Psest_1293 -1.0 -1.0 VanZ like family. compare
Psest_3242 -1.0 -3.4 hypothetical protein compare
Psest_2531 -1.0 -6.0 cytochrome c oxidase accessory protein FixG compare
Psest_2757 -1.0 -0.8 hypothetical protein compare
Psest_2906 -1.0 -2.3 tRNA_Thr_CGT compare
Psest_1456 -1.0 -1.8 Protein of unknown function (DUF2892). compare
Psest_1277 -1.0 -5.8 2-isopropylmalate synthase, yeast type compare
Psest_0547 -1.0 -2.6 Urease accessory protein UreF compare
Psest_1860 -1.0 -2.3 Uncharacterized conserved protein compare
Psest_0958 -1.0 -2.7 Oligoketide cyclase/lipid transport protein compare
Psest_1242 -1.0 -1.4 tRNA-guanine transglycosylase, queuosine-34-forming compare
Psest_1518 -1.0 -1.7 tRNA_Ser_CGA compare
Psest_3860 -1.0 -1.2 Predicted permeases compare
Psest_2945 -1.0 -1.0 septum site-determining protein MinC compare
Psest_2470 -1.0 -1.9 hypothetical protein compare
Psest_4088 -1.0 -1.8 Transcriptional regulators compare
Psest_2953 -1.0 -0.8 Histone acetyltransferase compare
Psest_3159 -1.0 -2.6 phosphoribosylformylglycinamidine synthase, single chain form compare
Psest_2901 -0.9 -1.1 hypothetical protein compare
Psest_3303 -0.9 -3.0 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) compare
Psest_2866 -0.9 -2.3 Uncharacterized conserved protein compare
Psest_0064 -0.9 -1.8 Transcriptional regulator compare
Psest_2153 -0.9 -2.2 formate dehydrogenase, gamma subunit compare
Psest_1506 -0.9 -2.8 queuosine biosynthesis protein QueC compare
Psest_3307 -0.9 -3.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Psest_0494 -0.9 -4.4 Rhodanese-related sulfurtransferase compare
Psest_1582 -0.9 -2.4 Protein of unknown function (DUF3087). compare
Psest_3426 -0.9 -2.2 Uncharacterized protein conserved in bacteria compare
Psest_2405 -0.9 -1.3 NAD-dependent protein deacetylases, SIR2 family compare
Psest_3790 -0.9 -3.2 Cytochrome c5 compare
Psest_1643 -0.9 -0.6 hypothetical protein compare
Psest_3711 -0.9 -6.5 Glutamate synthase domain 2 compare
Psest_1207 -0.9 -3.5 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
Psest_4128 -0.9 -0.8 Universal stress protein UspA and related nucleotide-binding proteins compare
Psest_2415 -0.9 -2.8 TolQ protein compare
Psest_3306 -0.9 -2.4 conserved hypothetical integral membrane protein compare
Psest_1979 -0.9 -2.5 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Psest_2988 -0.9 -2.7 aspartate kinase, monofunctional class compare
Psest_4219 -0.9 -1.0 DNA polymerase I compare
Psest_1923 -0.9 -2.4 adhesin-associated BNR repeat protein (from data) compare
Psest_3890 -0.9 -0.9 Multisubunit Na+/H+ antiporter, MnhB subunit compare
Psest_2500 -0.9 -1.7 hypothetical protein compare
Psest_0822 -0.9 -2.4 Transcriptional regulators compare
Psest_3191 -0.9 -1.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
Psest_1000 -0.9 -5.2 PAS domain S-box compare
Psest_3710 -0.9 -6.0 glutamate synthase small subunit family protein, proteobacterial compare
Psest_3862 -0.9 -5.6 phosphoenolpyruvate-protein phosphotransferase compare
Psest_1505 -0.9 -1.1 Organic radical activating enzymes compare
Psest_3500 -0.9 -2.1 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Psest_3323 -0.9 -2.7 ribonuclease, Rne/Rng family compare
Psest_1655 -0.9 -1.9 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
Psest_0532 -0.9 -3.5 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB compare
Psest_1595 -0.9 -0.8 Copper chaperone compare
Psest_2173 -0.8 -2.5 competence/damage-inducible protein CinA C-terminal domain compare
Psest_1492 -0.8 -4.2 DNA-binding ferritin-like protein (oxidative damage protectant) compare
Psest_2974 -0.8 -3.0 Predicted glycosyltransferase compare
Psest_1663 -0.8 -1.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
Psest_2240 -0.8 -0.9 hypothetical protein compare
Psest_0870 -0.8 -4.7 Alpha-glucosidase (EC 3.2.1.20) (from data) compare
Psest_3447 -0.8 -0.9 Uncharacterized MobA-related protein compare
Psest_1377 -0.8 -2.8 hypothetical protein compare


Specific Phenotypes

For 13 genes in this experiment