Experiment set20IT035 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3264 -5.6 -8.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2752 -3.4 -9.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2261 -2.9 -17.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_5338 -2.9 -10.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3257 -2.9 -12.9 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5337 -2.8 -5.1 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3074 -2.7 -1.5 FIG00960973: hypothetical protein compare
Pf6N2E2_3260 -2.7 -12.5 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_4803 -2.7 -3.1 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3258 -2.6 -11.3 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2274 -2.5 -2.9 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2320 -2.5 -4.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_1876 -2.4 -3.6 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_5339 -2.3 -7.2 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_5068 -2.3 -10.8 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5406 -2.3 -1.6 FIG00958224: hypothetical protein compare
Pf6N2E2_2318 -2.3 -7.7 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2827 -2.1 -2.3 hypothetical protein compare
Pf6N2E2_282 -2.1 -1.1 GNAT family acetyltransferase YjcF compare
Pf6N2E2_5069 -2.1 -4.7 putative Cytochrome bd2, subunit II compare
Pf6N2E2_338 -2.0 -2.6 Transcriptional regulator, AraC family compare
Pf6N2E2_1506 -2.0 -3.4 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_4638 -2.0 -2.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5178 -1.8 -3.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_2189 -1.8 -4.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3665 -1.8 -1.8 serine/threonine protein kinase compare
Pf6N2E2_4579 -1.8 -1.9 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_4071 -1.7 -1.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5704 -1.7 -1.6 Transcriptional regulatory protein PhoP compare
Pf6N2E2_6063 -1.7 -3.6 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2317 -1.7 -2.9 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2552 -1.6 -4.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3656 -1.6 -8.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_3303 -1.5 -2.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3661 -1.5 -1.0 hypothetical protein compare
Pf6N2E2_5006 -1.5 -1.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5816 -1.5 -1.9 Smr domain protein compare
Pf6N2E2_1545 -1.5 -4.0 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_4624 -1.4 -0.6 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5049 -1.4 -2.3 acetyltransferase, GNAT family compare
Pf6N2E2_3461 -1.4 -1.3 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_2919 -1.4 -2.2 FIG00955830: hypothetical protein compare
Pf6N2E2_4797 -1.4 -1.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3085 -1.4 -3.1 FIG00954614: hypothetical protein compare
Pf6N2E2_2384 -1.4 -1.8 CmpX compare
Pf6N2E2_2487 -1.3 -1.1 FIG00956090: hypothetical protein compare
Pf6N2E2_1450 -1.3 -1.4 FIG00960438: hypothetical protein compare
Pf6N2E2_405 -1.3 -1.5 hypothetical protein compare
Pf6N2E2_6064 -1.3 -1.9 2-methylaconitate isomerase compare
Pf6N2E2_6140 -1.3 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5703 -1.3 -1.9 outer membrane protein H1 compare
Pf6N2E2_3667 -1.2 -3.6 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_3690 -1.2 -1.2 Na(+)/H(+) antiporter compare
Pf6N2E2_2447 -1.2 -5.0 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_6090 -1.2 -1.5 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_5291 -1.2 -4.5 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2756 -1.2 -3.2 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_4453 -1.2 -5.1 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4372 -1.2 -2.6 FIG00460773: hypothetical protein compare
Pf6N2E2_831 -1.1 -2.3 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_1652 -1.1 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_6164 -1.1 -1.3 tRNA-Val-TAC compare
Pf6N2E2_3460 -1.1 -0.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2791 -1.1 -2.0 FIG00954883: hypothetical protein compare
Pf6N2E2_4162 -1.0 -2.1 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3948 -1.0 -2.5 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5843 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_2825 -1.0 -2.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4148 -1.0 -1.6 Glutamate-aspartate carrier protein compare
Pf6N2E2_4276 -1.0 -2.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2549 -1.0 -1.0 hypothetical protein compare
Pf6N2E2_4084 -1.0 -3.0 Transcriptional regulator compare
Pf6N2E2_2438 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_3081 -1.0 -1.5 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_3786 -1.0 -2.5 Twin-arginine translocation protein TatC compare
Pf6N2E2_5961 -1.0 -3.0 Transcriptional regulator, TetR family compare
Pf6N2E2_4187 -1.0 -3.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_737 -1.0 -1.2 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_4473 -1.0 -1.6 HlyD family secretion protein compare
Pf6N2E2_2519 -1.0 -1.1 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_3517 -1.0 -2.6 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_4362 -1.0 -1.5 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_4353 -0.9 -2.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_1211 -0.9 -2.3 Lactoylglutathione lyase compare
Pf6N2E2_1696 -0.9 -1.7 Alkanesulfonates-binding protein compare
Pf6N2E2_5825 -0.9 -3.5 FIG00958237: hypothetical protein compare
Pf6N2E2_601 -0.9 -2.5 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_1141 -0.9 -2.2 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_3829 -0.9 -2.6 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_2869 -0.9 -1.0 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_4121 -0.9 -3.0 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf6N2E2_5524 -0.8 -2.5 Outer membrane porin, OprD family compare
Pf6N2E2_638 -0.8 -2.1 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_1596 -0.8 -1.9 Periplasmic nitrate reductase component NapD compare
Pf6N2E2_5758 -0.8 -0.7 FIG00957314: hypothetical protein compare
Pf6N2E2_3326 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_3021 -0.8 -0.5 hypothetical protein compare
Pf6N2E2_3782 -0.8 -2.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1424 -0.8 -1.2 transcriptional regulator, TetR family compare
Pf6N2E2_4047 -0.8 -2.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3617 -0.8 -3.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4974 -0.8 -2.7 DedA protein compare
Pf6N2E2_4181 -0.8 -1.0 Organic hydroperoxide resistance protein compare
Pf6N2E2_1484 -0.8 -2.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Pf6N2E2_1672 -0.8 -4.9 hypothetical protein compare
Pf6N2E2_493 -0.8 -2.4 YD repeat protein compare
Pf6N2E2_5342 -0.8 -1.6 21 kDa hemolysin precursor compare
Pf6N2E2_3338 -0.8 -1.1 1-phosphofructokinase (EC 2.7.1.56) compare
Pf6N2E2_1636 -0.8 -3.6 Ferrichrome-iron receptor compare
Pf6N2E2_5242 -0.8 -1.0 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_6065 -0.8 -1.6 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_2313 -0.8 -1.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3454 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_945 -0.8 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_5499 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_5678 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_2218 -0.7 -1.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_3349 -0.7 -1.8 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5647 -0.7 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2012 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_1464 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_5252 -0.7 -1.2 FIG00956396: hypothetical protein compare
Pf6N2E2_2340 -0.7 -1.8 Transcriptional regulator, GntR family compare
Pf6N2E2_4160 -0.7 -1.1 Cytochrome c5 compare
Pf6N2E2_2910 -0.7 -1.7 Carbamate kinase (EC 2.7.2.2) compare
Pf6N2E2_2013 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_5172 -0.7 -2.0 FOG: TPR repeat compare
Pf6N2E2_3876 -0.7 -2.7 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_309 -0.7 -0.9 FIG00957702: hypothetical protein compare
Pf6N2E2_5714 -0.7 -0.7 Flavoprotein WrbA compare
Pf6N2E2_2139 -0.7 -2.5 Paraquat-inducible protein A compare
Pf6N2E2_5906 -0.7 -1.5 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_1504 -0.7 -2.2 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_5902 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_4342 -0.7 -2.3 Protein phosphatase ImpM compare
Pf6N2E2_3645 -0.7 -2.8 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_1199 -0.7 -2.3 hypothetical protein compare
Pf6N2E2_1824 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_4762 -0.7 -1.3 Biotin synthesis protein BioH compare
Pf6N2E2_3122 -0.7 -1.6 Chemotaxis signal transduction protein compare
Pf6N2E2_204 -0.7 -0.7 hypothetical protein compare
Pf6N2E2_5727 -0.7 -4.3 FIG00955360: hypothetical protein compare
Pf6N2E2_2281 -0.7 -1.4 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_16 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_5240 -0.7 -2.4 FIG00953775: hypothetical protein compare
Pf6N2E2_3658 -0.7 -4.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2323 -0.7 -0.4 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_5664 -0.7 -2.8 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_443 -0.7 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1078 -0.7 -5.1 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) compare
Pf6N2E2_3664 -0.6 -4.6 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2574 -0.6 -0.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_3655 -0.6 -5.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_924 -0.6 -1.5 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_2927 -0.6 -1.2 Putative signal peptide protein compare
Pf6N2E2_1317 -0.6 -1.8 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare
Pf6N2E2_2513 -0.6 -1.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4388 -0.6 -2.2 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_3833 -0.6 -2.6 hypothetical protein compare
Pf6N2E2_4057 -0.6 -0.8 lipoprotein, putative compare
Pf6N2E2_4394 -0.6 -1.5 Putrescine utilization regulator compare
Pf6N2E2_956 -0.6 -2.2 FIG01210404: hypothetical protein compare
Pf6N2E2_5584 -0.6 -1.5 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_4599 -0.6 -0.9 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_3037 -0.6 -3.6 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2724 -0.6 -1.8 Nitroreductase family protein compare
Pf6N2E2_2822 -0.6 -1.5 Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family compare
Pf6N2E2_4120 -0.6 -3.5 Trk system potassium uptake protein TrkA compare
Pf6N2E2_478 -0.6 -2.4 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_4612 -0.6 -2.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3300 -0.6 -1.8 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2143 -0.6 -1.6 Uncharacterized GST-like protein yncG compare
Pf6N2E2_2180 -0.6 -1.8 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2900 -0.6 -2.0 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_2413 -0.6 -1.0 FIG074102: hypothetical protein compare
Pf6N2E2_4593 -0.6 -1.6 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf6N2E2_5150 -0.6 -2.6 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4152 -0.6 -2.8 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_3094 -0.6 -2.1 SAM-dependent methyltransferase (EC 2.1.1.-) compare
Pf6N2E2_895 -0.6 -1.5 Transcriptional regulator, HxlR family compare
Pf6N2E2_1337 -0.6 -1.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4415 -0.6 -1.0 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_58 -0.6 -1.8 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_693 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_928 -0.6 -1.1 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_5319 -0.6 -2.0 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_494 -0.6 -1.3 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_3008 -0.6 -1.8 FIG00954242: hypothetical protein compare
Pf6N2E2_3027 -0.6 -1.0 Baseplate assembly protein V compare
Pf6N2E2_4471 -0.6 -1.8 ABC-type multidrug transport system, permease component compare
Pf6N2E2_2306 -0.6 -1.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4645 -0.6 -2.5 Integral membrane protein compare
Pf6N2E2_3663 -0.5 -2.3 Glycosyl transferase compare
Pf6N2E2_2062 -0.5 -1.2 FIG00955561: hypothetical protein compare
Pf6N2E2_1391 -0.5 -1.4 DNA-binding response regulator, LuxR family compare
Pf6N2E2_2510 -0.5 -0.9 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2081 -0.5 -1.3 putative exported protein compare
Pf6N2E2_1492 -0.5 -1.2 No significant database matches compare
Pf6N2E2_1932 -0.5 -1.4 Transcriptional regulator, IclR family compare
Pf6N2E2_1315 -0.5 -0.8 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments

For lb Kanamycin sulfate across organisms