Experiment set20IT033 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with PTLB purified from Pseudomonas sp. FW300-N2E2 0.05 x

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3264 -4.6 -8.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_2752 -4.4 -9.9 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2320 -4.0 -4.7 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3183 -3.4 -2.3 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_5338 -3.3 -11.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_3258 -3.3 -13.8 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2261 -3.3 -22.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_648 -3.1 -2.0 General secretion pathway protein K compare
Pf6N2E2_5069 -2.7 -5.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_5337 -2.7 -7.5 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_3260 -2.7 -12.4 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Pf6N2E2_3257 -2.6 -10.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5339 -2.6 -7.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_4181 -2.4 -1.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_4773 -2.3 -1.0 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5068 -2.3 -10.6 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3303 -2.3 -2.7 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2274 -2.2 -3.0 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4372 -2.2 -3.3 FIG00460773: hypothetical protein compare
Pf6N2E2_6140 -2.1 -1.4 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3074 -2.1 -1.8 FIG00960973: hypothetical protein compare
Pf6N2E2_3667 -2.0 -2.9 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_6063 -1.9 -3.4 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_3786 -1.9 -3.8 Twin-arginine translocation protein TatC compare
Pf6N2E2_3665 -1.8 -1.9 serine/threonine protein kinase compare
Pf6N2E2_4187 -1.8 -6.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5647 -1.8 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2318 -1.8 -6.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4071 -1.7 -1.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2519 -1.7 -1.6 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5704 -1.6 -1.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5006 -1.6 -1.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3661 -1.6 -1.1 hypothetical protein compare
Pf6N2E2_6064 -1.5 -1.9 2-methylaconitate isomerase compare
Pf6N2E2_4624 -1.4 -0.6 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_5406 -1.4 -1.6 FIG00958224: hypothetical protein compare
Pf6N2E2_2552 -1.4 -4.2 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_3690 -1.4 -0.9 Na(+)/H(+) antiporter compare
Pf6N2E2_4803 -1.4 -1.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_1032 -1.4 -1.5 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5677 -1.3 -0.9 Carbon storage regulator compare
Pf6N2E2_3656 -1.3 -7.0 Probable transcription regulator Mig-14 compare
Pf6N2E2_3122 -1.3 -3.3 Chemotaxis signal transduction protein compare
Pf6N2E2_5291 -1.3 -4.8 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2447 -1.3 -6.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5567 -1.3 -2.1 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_2218 -1.3 -2.1 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4640 -1.3 -2.0 hypothetical protein compare
Pf6N2E2_4541 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_4084 -1.2 -3.2 Transcriptional regulator compare
Pf6N2E2_1022 -1.2 -2.5 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_2317 -1.2 -2.5 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2788 -1.2 -1.8 Transcriptional regulator, AsnC family compare
Pf6N2E2_2189 -1.2 -4.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2387 -1.2 -3.5 Ribonuclease E inhibitor RraA compare
Pf6N2E2_5160 -1.1 -0.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2527 -1.1 -2.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3460 -1.1 -0.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3659 -1.1 -2.9 Protein fixF compare
Pf6N2E2_924 -1.1 -2.1 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_1743 -1.1 -2.7 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_4762 -1.1 -1.7 Biotin synthesis protein BioH compare
Pf6N2E2_4453 -1.1 -4.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2634 -1.1 -4.9 Potassium uptake protein TrkH compare
Pf6N2E2_3461 -1.1 -1.0 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_82 -1.1 -2.4 hypothetical protein compare
Pf6N2E2_4473 -1.1 -1.4 HlyD family secretion protein compare
Pf6N2E2_3658 -1.1 -6.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4464 -1.1 -1.6 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_3948 -1.0 -2.5 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_3198 -1.0 -0.7 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_4014 -1.0 -3.6 Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16) compare
Pf6N2E2_3645 -1.0 -3.6 Type I secretion outer membrane protein, TolC precursor compare
Pf6N2E2_3835 -1.0 -1.6 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_1504 -1.0 -2.8 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_384 -1.0 -1.9 Glycine cleavage system transcriptional activator compare
Pf6N2E2_4388 -1.0 -3.0 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_3132 -0.9 -1.9 FIG00954548: hypothetical protein compare
Pf6N2E2_1450 -0.9 -1.2 FIG00960438: hypothetical protein compare
Pf6N2E2_1065 -0.9 -2.4 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4678 -0.9 -0.9 hypothetical protein compare
Pf6N2E2_3870 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_5593 -0.9 -2.9 Leucyl-tRNA synthetase compare
Pf6N2E2_4152 -0.9 -4.1 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_5898 -0.9 -2.1 Integral membrane protein compare
Pf6N2E2_5483 -0.9 -3.2 hypothetical protein compare
Pf6N2E2_1545 -0.9 -3.1 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_3702 -0.9 -2.9 FIG00953907: hypothetical protein compare
Pf6N2E2_445 -0.9 -6.8 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4080 -0.9 -3.0 FIG00953722: hypothetical protein compare
Pf6N2E2_2012 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_2312 -0.8 -1.4 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_5524 -0.8 -2.9 Outer membrane porin, OprD family compare
Pf6N2E2_5640 -0.8 -1.7 FIG00955597: hypothetical protein compare
Pf6N2E2_2465 -0.8 -4.8 Cys regulon transcriptional activator CysB compare
Pf6N2E2_4471 -0.8 -2.7 ABC-type multidrug transport system, permease component compare
Pf6N2E2_1715 -0.8 -2.5 hypothetical protein compare
Pf6N2E2_3663 -0.8 -3.0 Glycosyl transferase compare
Pf6N2E2_5178 -0.8 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_895 -0.8 -2.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_81 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_1838 -0.8 -2.2 6-hexanolactone hydrolase compare
Pf6N2E2_2124 -0.8 -1.3 Mg(2+) transport ATPase protein C compare
Pf6N2E2_2420 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_3589 -0.8 -1.6 Lysine decarboxylase family compare
Pf6N2E2_4454 -0.8 -4.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3328 -0.8 -1.5 transcriptional regulator compare
Pf6N2E2_4153 -0.8 -0.7 Sensory box histidine kinase compare
Pf6N2E2_1735 -0.8 -1.4 PhnB protein compare
Pf6N2E2_1656 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_3641 -0.8 -1.6 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_553 -0.8 -2.2 Uncharacterized protein ImpD compare
Pf6N2E2_5523 -0.8 -1.9 Small-conductance mechanosensitive channel compare
Pf6N2E2_746 -0.8 -0.7 FIG00958097: hypothetical protein compare
Pf6N2E2_3261 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_2574 -0.8 -0.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_2281 -0.8 -1.7 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_1920 -0.8 -2.1 Rubredoxin compare
Pf6N2E2_831 -0.7 -2.1 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_2139 -0.7 -2.1 Paraquat-inducible protein A compare
Pf6N2E2_4584 -0.7 -2.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_156 -0.7 -1.6 Carbon storage regulator compare
Pf6N2E2_178 -0.7 -0.6 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_5727 -0.7 -4.5 FIG00955360: hypothetical protein compare
Pf6N2E2_3941 -0.7 -0.5 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
Pf6N2E2_2933 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_3373 -0.7 -2.2 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_2324 -0.7 -1.5 Adenine phosphoribosyltransferase (EC 2.4.2.7) compare
Pf6N2E2_4974 -0.7 -2.6 DedA protein compare
Pf6N2E2_4136 -0.7 -2.8 Aromatic ring-cleaving dioxygenase compare
Pf6N2E2_477 -0.7 -3.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf6N2E2_2514 -0.7 -2.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_6130 -0.7 -1.9 5S RNA compare
Pf6N2E2_1169 -0.7 -1.4 TnpR protein compare
Pf6N2E2_5780 -0.7 -2.2 Periplasmic protease compare
Pf6N2E2_1894 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_4987 -0.7 -0.6 MaoC-like domain protein compare
Pf6N2E2_5623 -0.7 -1.9 YciL protein compare
Pf6N2E2_3847 -0.7 -0.5 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2682 -0.7 -2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_1759 -0.7 -1.8 uncharacterized domain 1 compare
Pf6N2E2_4579 -0.7 -0.8 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2123 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_3062 -0.7 -1.9 Membrane-associated zinc metalloprotease compare
Pf6N2E2_955 -0.7 -1.3 FIG00953508: hypothetical protein compare
Pf6N2E2_728 -0.7 -1.9 Nitrate/nitrite transporter compare
Pf6N2E2_4990 -0.7 -2.4 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf6N2E2_1370 -0.7 -3.2 Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28) compare
Pf6N2E2_6164 -0.7 -0.9 tRNA-Val-TAC compare
Pf6N2E2_3612 -0.7 -0.4 HflK protein compare
Pf6N2E2_3655 -0.7 -5.7 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3037 -0.7 -3.9 RNA polymerase sigma factor RpoS compare
Pf6N2E2_2121 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_3588 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_5766 -0.7 -0.8 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_6099 -0.7 -0.9 tRNA-Glu-TTC compare
Pf6N2E2_663 -0.7 -2.2 Transcriptional activator of acetoin dehydrogenase operon AcoR compare
Pf6N2E2_1195 -0.6 -1.9 hypothetical protein compare
Pf6N2E2_5500 -0.6 -1.8 MoxR-like ATPases compare
Pf6N2E2_988 -0.6 -1.9 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_5150 -0.6 -2.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_4943 -0.6 -1.7 PspA/IM30 family protein compare
Pf6N2E2_4599 -0.6 -0.9 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5579 -0.6 -2.8 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf6N2E2_5050 -0.6 -2.2 hypothetical protein compare
Pf6N2E2_5944 -0.6 -2.4 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_2910 -0.6 -1.5 Carbamate kinase (EC 2.7.2.2) compare
Pf6N2E2_3100 -0.6 -1.8 FIG00953063: hypothetical protein compare
Pf6N2E2_3505 -0.6 -1.6 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1692 -0.6 -1.5 transporter, LysE family compare
Pf6N2E2_4543 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_3081 -0.6 -1.2 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_1095 -0.6 -0.7 Opine oxidase subunit C compare
Pf6N2E2_2717 -0.6 -2.2 putative cytoplasmic protein compare
Pf6N2E2_2794 -0.6 -0.7 putative membrane protein compare
Pf6N2E2_1620 -0.6 -2.7 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases compare
Pf6N2E2_1432 -0.6 -2.5 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Pf6N2E2_687 -0.6 -1.8 4-oxalocrotonate tautomerase (EC 5.3.2.-) compare
Pf6N2E2_451 -0.6 -1.1 transcriptional regulator MvaT, P16 subunit, putative compare
Pf6N2E2_3844 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_1824 -0.6 -0.8 hypothetical protein compare
Pf6N2E2_3077 -0.6 -2.5 FIG138056: a glutathione-dependent thiol reductase compare
Pf6N2E2_3349 -0.6 -1.3 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_1844 -0.6 -2.2 MaoC-related acyl dehydratase compare
Pf6N2E2_5346 -0.6 -1.0 rRNA small subunit methyltransferase I compare
Pf6N2E2_3326 -0.6 -0.4 hypothetical protein compare
Pf6N2E2_75 -0.6 -2.1 Colicin V production protein compare
Pf6N2E2_37 -0.6 -1.6 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_2007 -0.6 -1.8 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_555 -0.6 -2.7 Uncharacterized protein ImpB compare
Pf6N2E2_3014 -0.6 -1.8 P2-like prophage tail protein X compare
Pf6N2E2_2496 -0.6 -1.0 FIG00956575: hypothetical protein compare
Pf6N2E2_1981 -0.6 -1.5 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_3060 -0.6 -1.5 Outer membrane protein H precursor compare
Pf6N2E2_4120 -0.6 -3.5 Trk system potassium uptake protein TrkA compare
Pf6N2E2_3664 -0.6 -4.2 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_1482 -0.6 -2.0 Probable periplasmic spermidine/putrescine-binding protein compare
Pf6N2E2_6090 -0.6 -1.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_3902 -0.6 -2.5 Ribosomal protein S6 glutaminyl transferase compare
Pf6N2E2_813 -0.6 -2.0 Response regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress PTLB purified from Pseudomonas sp. FW300-N2E2 across organisms