Experiment set1S99 for Synechocystis sp000284455 PCC 6803

Compare to:

NaNO3 10 mM as N source, buffered with TES 20 mM TES pH8

200 most important genes:

  gene name fitness t score description  
SGL_RS03520 -5.7 -5.5 ABC transporter permease compare
SGL_RS06130 -5.5 -3.8 anti-sigma regulatory factor compare
SGL_RS03540 -5.3 -8.8 ABC transporter ATP-binding protein compare
SGL_RS05375 -5.2 -3.5 hypothetical protein compare
SGL_RS16940 -5.1 -3.5 dephospho-CoA kinase compare
SGL_RS05390 -4.9 -4.7 Na(+)/H(+) antiporter subunit B compare
SGL_RS05370 -4.9 -2.5 Na+/H+ antiporter subunit E compare
SGL_RS15425 -4.8 -5.7 cobalamin biosynthesis protein CobW compare
SGL_RS12335 -4.6 -5.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS15045 -4.6 -6.3 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS03840 -4.5 -3.1 adenylyl-sulfate kinase compare
SGL_RS10775 -4.5 -7.2 DUF3326 domain-containing protein compare
SGL_RS16100 -4.3 -4.2 heavy metal translocating P-type ATPase compare
SGL_RS02665 -4.3 -2.9 nickel pincer cofactor biosynthesis protein LarC compare
SGL_RS05380 -4.3 -2.9 monovalent cation/H(+) antiporter subunit G compare
SGL_RS12870 -4.2 -4.9 YqeG family HAD IIIA-type phosphatase compare
SGL_RS14930 -4.2 -8.0 type I methionyl aminopeptidase compare
SGL_RS13870 -4.2 -4.0 rRNA maturation RNase YbeY compare
SGL_RS06430 -4.2 -2.8 glycosyltransferase family 2 protein compare
SGL_RS05385 -4.1 -4.0 DUF4040 domain-containing protein compare
SGL_RS14430 -4.1 -4.0 cobalt ECF transporter T component CbiQ compare
SGL_RS11510 -4.1 -3.9 dihydroneopterin aldolase compare
SGL_RS07840 -4.1 -2.8 SDR family NAD(P)-dependent oxidoreductase compare
SGL_RS03625 -4.0 -10.9 glycosyltransferase family 1 protein compare
SGL_RS12575 -4.0 -2.7 riboflavin synthase compare
SGL_RS11000 -3.9 -2.7 sulfate adenylyltransferase compare
SGL_RS02580 -3.9 -3.7 DUF1818 family protein compare
SGL_RS12920 -3.9 -2.6 hypothetical protein compare
SGL_RS12545 -3.9 -2.6 GTPase Era compare
SGL_RS12490 -3.8 -5.2 glutamate--cysteine ligase compare
SGL_RS08175 -3.8 -3.7 serine hydrolase compare
SGL_RS03380 -3.8 -8.3 sulfite reductase, ferredoxin dependent compare
SGL_RS11135 -3.8 -2.6 D-alanyl-D-alanine dipeptidase DdpX compare
SGL_RS17685 -3.7 -12.3 ArsB/NhaD family transporter compare
SGL_RS03550 -3.6 -16.6 CDP-glucose 4,6-dehydratase compare
SGL_RS05980 -3.6 -4.8 hypothetical protein compare
SGL_RS02145 -3.5 -10.3 metallophosphoesterase compare
SGL_RS02515 -3.4 -6.5 M56 family metallopeptidase compare
SGL_RS14445 -3.4 -3.3 hypothetical protein compare
SGL_RS15130 -3.4 -10.4 dTDP-glucose 4,6-dehydratase compare
SGL_RS05440 -3.3 -2.2 ACP S-malonyltransferase compare
SGL_RS13535 -3.3 -3.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
SGL_RS15560 -3.3 -2.3 dethiobiotin synthase compare
SGL_RS03590 -3.3 -6.9 ATP-grasp domain-containing protein compare
SGL_RS13555 -3.3 -4.6 aldehyde oxygenase (deformylating) compare
SGL_RS06020 -3.2 -4.8 sugar ABC transporter permease compare
SGL_RS17520 -3.2 -4.3 DUF3352 domain-containing protein compare
SGL_RS17650 -3.2 -3.1 hypothetical protein compare
SGL_RS16950 -3.2 -10.1 phosphoketolase compare
SGL_RS08535 -3.2 -3.0 NIL domain-containing protein compare
SGL_RS07200 -3.2 -2.2 LCP family protein compare
SGL_RS09820 -3.2 -4.4 ribosome maturation factor RimM compare
SGL_RS06675 -3.2 -5.1 ABC transporter ATP-binding protein compare
SGL_RS14335 -3.1 -2.1 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
SGL_RS16545 -3.1 -12.1 LdpA C-terminal domain-containing domain compare
SGL_RS17330 -3.1 -10.3 biosynthetic arginine decarboxylase compare
SGL_RS14540 -3.1 -2.9 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR compare
SGL_RS03545 -3.1 -6.4 glucose-1-phosphate cytidylyltransferase compare
SGL_RS04510 -3.1 -3.9 DUF561 domain-containing protein compare
SGL_RS06440 -3.1 -7.7 NAD-dependent epimerase/dehydratase family protein compare
SGL_RS03560 -3.0 -9.9 class I SAM-dependent methyltransferase compare
SGL_RS05560 -3.0 -2.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS10320 -3.0 -2.0 ribosome biogenesis GTPase Der compare
SGL_RS03950 -3.0 -9.8 homocysteine biosynthesis protein compare
SGL_RS09385 -3.0 -2.0 2-carboxy-1,4-naphthoquinone phytyltransferase compare
SGL_RS17470 -3.0 -4.0 nickel pincer cofactor biosynthesis protein LarB compare
SGL_RS09720 -3.0 -2.0 beta-ketoacyl-ACP synthase compare
SGL_RS04490 -3.0 -3.4 2TM domain-containing protein compare
SGL_RS12770 -2.9 -2.0 uroporphyrinogen-III C-methyltransferase compare
SGL_RS05880 -2.9 -3.8 sugar ABC transporter substrate-binding protein compare
SGL_RS03365 -2.9 -3.6 Ycf66 family protein compare
SGL_RS09395 -2.9 -2.7 aldo/keto reductase compare
SGL_RS02220 -2.8 -1.9 phosphoribosylformylglycinamidine synthase subunit PurL compare
SGL_RS03585 -2.8 -11.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
SGL_RS03790 -2.8 -3.3 GTPase ObgE compare
SGL_RS13195 -2.8 -5.6 Ig-like domain-containing protein compare
SGL_RS12585 -2.8 -1.9 ABC transporter permease subunit compare
SGL_RS15530 -2.8 -1.9 phosphoribosylformylglycinamidine synthase subunit PurQ compare
SGL_RS17405 -2.8 -8.4 L-2-hydroxyglutarate oxidase compare
SGL_RS14860 -2.7 -3.6 8-amino-7-oxononanoate synthase compare
SGL_RS15700 -2.7 -11.4 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
SGL_RS03555 -2.7 -13.7 dTDP-4-dehydrorhamnose 3,5-epimerase compare
SGL_RS16880 -2.7 -4.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
SGL_RS14285 -2.7 -3.9 hypothetical protein compare
SGL_RS02095 -2.6 -4.3 dTDP-4-dehydrorhamnose reductase compare
SGL_RS18300 -2.6 -3.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
SGL_RS09845 -2.6 -6.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
SGL_RS04720 -2.6 -2.4 iron uptake porin compare
SGL_RS14920 -2.6 -2.9 cation:proton antiporter compare
SGL_RS06595 -2.5 -5.2 CmpA/NrtA family ABC transporter substrate-binding protein compare
SGL_RS02460 -2.5 -3.9 phosphate signaling complex protein PhoU compare
SGL_RS08275 -2.5 -2.9 tetratricopeptide repeat protein compare
SGL_RS06355 -2.5 -2.3 carbon dioxide-concentrating mechanism protein CcmK compare
SGL_RS05210 -2.5 -8.2 SLBB domain-containing protein compare
SGL_RS04775 -2.5 -4.2 alpha/beta hydrolase compare
SGL_RS03970 -2.5 -3.3 thiamine phosphate synthase compare
SGL_RS18320 -2.5 -10.6 serine/threonine-protein kinase compare
SGL_RS03775 -2.4 -4.3 membrane protein compare
SGL_RS14425 -2.4 -3.2 energy-coupling factor ABC transporter ATP-binding protein compare
SGL_RS02475 -2.4 -3.6 YlxR family protein compare
SGL_RS15655 -2.4 -16.4 asparaginase compare
SGL_RS06590 -2.4 -4.5 nitrate ABC transporter permease compare
SGL_RS08765 -2.4 -3.1 2-phosphosulfolactate phosphatase family protein compare
SGL_RS15865 -2.4 -4.4 septum site-determining protein MinD compare
SGL_RS10305 -2.4 -6.2 PIN/TRAM domain-containing protein compare
SGL_RS08710 -2.4 -3.5 folylpolyglutamate synthase/dihydrofolate synthase family protein compare
SGL_RS12930 -2.4 -2.7 DUF1257 domain-containing protein compare
SGL_RS03425 -2.4 -1.6 precorrin-3B C(17)-methyltransferase compare
SGL_RS03060 -2.4 -3.6 phosphoadenosine phosphosulfate reductase compare
SGL_RS16360 -2.3 -3.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
SGL_RS14105 -2.3 -2.6 2-succinylbenzoate--CoA ligase compare
SGL_RS12030 -2.3 -4.0 extracellular solute-binding protein compare
SGL_RS03185 -2.3 -2.2 biotin--[acetyl-CoA-carboxylase] ligase compare
SGL_RS07605 -2.3 -3.0 HEAT repeat domain-containing protein compare
SGL_RS05470 -2.3 -3.6 dihydropteroate synthase compare
SGL_RS03250 -2.2 -4.4 tRNA (guanosine(37)-N1)-methyltransferase TrmD compare
SGL_RS12985 -2.2 -3.3 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase compare
SGL_RS10480 -2.2 -11.7 metallophosphoesterase family protein compare
SGL_RS17305 -2.2 -3.4 pyrroline-5-carboxylate reductase compare
SGL_RS13495 -2.2 -9.3 AarF/ABC1/UbiB kinase family protein compare
SGL_RS13465 -2.2 -10.4 class II fumarate hydratase compare
SGL_RS13370 -2.2 -3.1 exonuclease SbcCD subunit D compare
SGL_RS17125 -2.1 -3.5 inositol monophosphatase family protein compare
SGL_RS05320 -2.1 -8.6 PBP1A family penicillin-binding protein compare
SGL_RS12400 -2.1 -2.4 lysophospholipid acyltransferase family protein compare
SGL_RS03630 -2.1 -4.9 glycosyltransferase family 2 protein compare
SGL_RS18215 -2.1 -3.3 pentapeptide repeat-containing protein compare
SGL_RS03450 -2.1 -3.4 permease compare
SGL_RS19585 -2.0 -4.5 hypothetical protein compare
SGL_RS04230 -2.0 -3.6 exonuclease subunit SbcC compare
SGL_RS05435 -2.0 -3.1 heavy metal translocating P-type ATPase compare
SGL_RS02375 -2.0 -8.3 DUF3086 domain-containing protein compare
SGL_RS14505 -2.0 -5.1 glutamate-5-semialdehyde dehydrogenase compare
SGL_RS13510 -2.0 -4.3 transglycosylase domain-containing protein compare
SGL_RS13550 -1.9 -1.7 long-chain acyl-[acyl-carrier-protein] reductase compare
SGL_RS02955 -1.9 -4.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
SGL_RS16670 -1.9 -13.5 DUF5942 domain-containing protein compare
SGL_RS16860 -1.9 -5.7 small ribosomal subunit biogenesis GTPase RsgA compare
SGL_RS16770 -1.9 -6.4 LptF/LptG family permease compare
SGL_RS12755 -1.9 -8.9 IMS domain-containing protein compare
SGL_RS04525 -1.9 -2.7 photosynthesis system II assembly factor Ycf48 compare
SGL_RS03505 -1.9 -11.2 exopolysaccharide transport family protein compare
SGL_RS08605 -1.8 -4.1 DUF3120 domain-containing protein compare
SGL_RS03430 -1.8 -6.5 DUF4335 domain-containing protein compare
SGL_RS11835 -1.8 -2.1 transcription antitermination factor NusB compare
SGL_RS06585 -1.8 -3.8 nitrate ABC transporter ATP-binding protein compare
SGL_RS16705 -1.8 -5.1 diadenylate cyclase CdaA compare
SGL_RS04660 -1.8 -4.0 phycobilisome rod-core linker polypeptide compare
SGL_RS10160 -1.8 -4.7 B12-binding domain-containing radical SAM protein compare
SGL_RS17175 -1.8 -3.4 allophycocyanin subunit beta compare
SGL_RS08495 -1.8 -7.0 DUF3370 domain-containing protein compare
SGL_RS08790 -1.8 -2.1 carbohydrate ABC transporter permease compare
SGL_RS13910 -1.8 -5.0 phasin family protein compare
SGL_RS18095 -1.7 -5.1 TIGR03943 family protein compare
SGL_RS11955 -1.7 -4.2 aminomethyl-transferring glycine dehydrogenase compare
SGL_RS14435 -1.7 -1.5 cobalt transporter CbiM compare
SGL_RS03085 -1.7 -5.1 DUF2862 domain-containing protein compare
SGL_RS13560 -1.7 -10.7 glucose-1-phosphate thymidylyltransferase compare
SGL_RS04390 -1.7 -3.3 DUF433 domain-containing protein compare
SGL_RS11025 -1.7 -5.1 oxidoreductase compare
SGL_RS07105 -1.7 -5.8 precorrin-6Y C5,15-methyltransferase subunit CbiT compare
SGL_RS06110 -1.6 -4.2 glycosyltransferase family 4 protein compare
SGL_RS09160 -1.6 -3.1 thioredoxin family protein compare
SGL_RS03675 -1.6 -3.4 hypothetical protein compare
SGL_RS03275 -1.6 -9.5 UDP-glucose/GDP-mannose dehydrogenase family protein compare
SGL_RS14045 -1.6 -4.1 hypothetical protein compare
SGL_RS10155 -1.6 -3.5 hypothetical protein compare
SGL_RS14025 -1.5 -8.5 gamma-glutamyl-phosphate reductase compare
SGL_RS04550 -1.5 -5.2 glutamate 5-kinase compare
SGL_RS19460 -1.5 -3.6 hypothetical protein compare
SGL_RS03640 -1.5 -8.0 UDP-glucose 4-epimerase GalE compare
SGL_RS12235 -1.5 -2.3 aminopeptidase P N-terminal domain-containing protein compare
SGL_RS11675 -1.5 -3.9 chromophore lyase CpcT/CpeT compare
SGL_RS02850 -1.5 -5.7 uracil phosphoribosyltransferase compare
SGL_RS15435 -1.5 -7.1 PD40 domain-containing protein compare
SGL_RS06460 -1.4 -5.6 fatty acid desaturase compare
SGL_RS06755 -1.4 -4.4 bacterioferritin-associated ferredoxin compare
SGL_RS02260 -1.4 -2.0 HEAT repeat domain-containing protein compare
SGL_RS18365 -1.4 -6.5 glycosyltransferase family 9 protein compare
SGL_RS08115 -1.4 -3.8 NAD(P)/FAD-dependent oxidoreductase compare
SGL_RS16735 -1.4 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
SGL_RS03670 -1.4 -4.1 glycosyltransferase compare
SGL_RS07305 -1.4 -7.6 N-acetylmuramic acid 6-phosphate etherase compare
SGL_RS15870 -1.4 -4.8 septum site-determining protein MinC compare
SGL_RS03685 -1.4 -9.1 glycosyltransferase compare
SGL_RS05500 -1.4 -8.4 ribonuclease R compare
SGL_RS15620 -1.4 -1.9 cobyric acid synthase CobQ compare
SGL_RS00825 -1.3 -4.5 hypothetical protein compare
SGL_RS13855 -1.3 -4.2 hypothetical protein compare
SGL_RS01905 -1.3 -8.4 GDP-mannose 4,6-dehydratase compare
SGL_RS13055 -1.3 -1.7 protein translocase subunit SecF compare
SGL_RS07935 -1.3 -3.1 hypothetical protein compare
SGL_RS12910 -1.3 -5.6 acetyl-CoA carboxylase, carboxyltransferase subunit beta compare
SGL_RS15370 -1.3 -4.0 DnaJ C-terminal domain-containing protein compare
SGL_RS02305 -1.3 -6.8 NAD-dependent malic enzyme compare
SGL_RS07870 -1.3 -2.1 Ycf51 family protein compare
SGL_RS01900 -1.3 -4.4 GDP-L-fucose synthase compare
SGL_RS13900 -1.3 -7.8 AI-2E family transporter compare
SGL_RS13685 -1.3 -6.2 ABC transporter ATP-binding protein compare
SGL_RS11760 -1.3 -6.8 radical SAM protein compare


Specific Phenotypes

None in this experiment

For Synechocystis sp000284455 PCC 6803 in nitrogen source experiments

For nitrogen source Sodium nitrate across organisms