Experiment set1S94 for Enterobacter sp. TBS_079

Compare to:

Outgrowth from agar plate co-culture with Variovorax sp. TBS_050B

200 most important genes:

  gene name fitness t score description  
MPMX20_01950 -5.9 -4.0 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_04768 -5.8 -25.2 hypothetical protein compare
MPMX20_01570 -4.5 -4.4 Integration host factor subunit beta compare
MPMX20_03986 -4.1 -4.5 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_01367 -3.6 -8.7 Tol-Pal system protein TolR compare
MPMX20_00749 -3.4 -8.7 Chaperone SurA compare
MPMX20_03309 -3.4 -3.3 Phosphocarrier protein HPr compare
MPMX20_04442 -3.4 -6.4 Sec-independent protein translocase protein TatC compare
MPMX20_01370 -3.3 -5.9 Peptidoglycan-associated lipoprotein compare
MPMX20_01366 -3.2 -5.0 Tol-Pal system protein TolQ compare
MPMX20_04469 -3.0 -4.1 Adenylate cyclase compare
MPMX20_04275 -2.9 -2.8 Ribulose-phosphate 3-epimerase compare
MPMX20_01552 -2.9 -4.9 hypothetical protein compare
MPMX20_03018 -2.9 -4.8 hypothetical protein compare
MPMX20_02701 -2.9 -3.4 Fatty acid metabolism regulator protein compare
MPMX20_04444 -2.9 -2.1 Sec-independent protein translocase protein TatA compare
MPMX20_04641 -2.9 -2.8 Phosphate transport system permease protein PstA compare
MPMX20_02591 -2.8 -5.4 DNA-binding protein H-NS compare
MPMX20_01354 -2.7 -3.5 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_03021 -2.7 -8.6 hypothetical protein compare
MPMX20_04595 -2.7 -1.8 Glutamine synthetase compare
MPMX20_04427 -2.7 -1.8 5S ribosomal RNA compare
MPMX20_04642 -2.7 -2.6 Phosphate import ATP-binding protein PstB compare
MPMX20_04483 -2.6 -1.8 Lipid III flippase compare
MPMX20_02766 -2.5 -4.4 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_03019 -2.5 -14.4 hypothetical protein compare
MPMX20_03440 -2.5 -5.9 Elongation factor 4 compare
MPMX20_00106 -2.5 -4.7 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_01028 -2.5 -1.7 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_04530 -2.5 -11.8 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_04301 -2.4 -2.8 Fe/S biogenesis protein NfuA compare
MPMX20_02635 -2.4 -3.3 Release factor glutamine methyltransferase compare
MPMX20_01984 -2.4 -3.0 Ribonuclease T compare
MPMX20_01030 -2.4 -8.1 Lon protease compare
MPMX20_04440 -2.4 -1.8 Transcription antitermination protein RfaH compare
MPMX20_03010 -2.3 -4.9 UDP-glucose 4-epimerase compare
MPMX20_03685 -2.3 -3.8 RecBCD enzyme subunit RecC compare
MPMX20_04489 -2.3 -14.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_04532 -2.3 -2.9 Met repressor compare
MPMX20_03753 -2.2 -7.2 Tyrosine recombinase XerD compare
MPMX20_04601 -2.2 -3.1 DNA polymerase I compare
MPMX20_01607 -2.1 -4.2 Outer membrane protein A compare
MPMX20_03310 -2.1 -4.4 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04028 -2.1 -3.2 hypothetical protein compare
MPMX20_00929 -2.0 -3.5 tRNA-Thr compare
MPMX20_01369 -2.0 -6.8 Tol-Pal system protein TolB compare
MPMX20_04197 -2.0 -5.0 Trk system potassium uptake protein TrkA compare
MPMX20_03390 -2.0 -6.7 Outer membrane protein assembly factor BamB compare
MPMX20_02476 -2.0 -3.3 Putrescine export system permease protein SapC compare
MPMX20_00807 -2.0 -4.4 Pyruvate dehydrogenase E1 component compare
MPMX20_03022 -2.0 -2.7 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_00109 -2.0 -14.3 hypothetical protein compare
MPMX20_00110 -2.0 -13.1 hypothetical protein compare
MPMX20_03409 -2.0 -3.2 Iron-binding protein IscA compare
MPMX20_01368 -1.9 -3.6 hypothetical protein compare
MPMX20_00102 -1.9 -1.3 hypothetical protein compare
MPMX20_00453 -1.9 -2.0 RNA-binding protein Hfq compare
MPMX20_01286 -1.9 -1.6 Sec-independent protein translocase protein TatE compare
MPMX20_01972 -1.8 -1.7 tRNA-Val compare
MPMX20_04650 -1.8 -3.8 tRNA modification GTPase MnmE compare
MPMX20_01350 -1.8 -3.6 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_01901 -1.8 -1.9 Integration host factor subunit alpha compare
MPMX20_04465 -1.8 -4.9 Tyrosine recombinase XerC compare
MPMX20_04626 -1.8 -3.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_03683 -1.7 -3.1 RecBCD enzyme subunit RecB compare
MPMX20_04393 -1.7 -5.3 Low-affinity inorganic phosphate transporter 1 compare
MPMX20_01969 -1.7 -3.2 Carbonic anhydrase 1 compare
MPMX20_01334 -1.7 -6.4 Phosphoglucomutase compare
MPMX20_01351 -1.7 -3.8 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_03407 -1.7 -2.9 Chaperone protein HscA compare
MPMX20_04119 -1.7 -2.3 DNA polymerase III subunit chi compare
MPMX20_00747 -1.7 -4.8 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_00721 -1.6 -2.6 Chaperone protein DnaJ compare
MPMX20_03408 -1.6 -1.9 Co-chaperone protein HscB compare
MPMX20_02869 -1.6 -12.5 hypothetical protein compare
MPMX20_03308 -1.5 -5.6 Cysteine synthase A compare
MPMX20_02574 -1.5 -2.6 putative intracellular septation protein A compare
MPMX20_03394 -1.5 -1.9 Cytoskeleton protein RodZ compare
MPMX20_04518 -1.5 -4.5 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_03490 -1.5 -3.9 SsrA-binding protein compare
MPMX20_00105 -1.5 -7.4 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_00812 -1.5 -5.0 Aconitate hydratase B compare
MPMX20_03017 -1.5 -7.7 hypothetical protein compare
MPMX20_00570 -1.5 -9.2 putative BsuMI modification methylase subunit YdiO compare
MPMX20_04278 -1.4 -4.0 3-dehydroquinate synthase compare
MPMX20_03095 -1.4 -1.7 hypothetical protein compare
MPMX20_02885 -1.4 -6.2 hypothetical protein compare
MPMX20_02886 -1.4 -8.4 hypothetical protein compare
MPMX20_01353 -1.4 -5.1 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_04463 -1.3 -4.0 DNA helicase II compare
MPMX20_00108 -1.3 -9.9 hypothetical protein compare
MPMX20_02732 -1.3 -2.6 PhoP/PhoQ regulator MgrB compare
MPMX20_03206 -1.3 -6.1 NADH-quinone oxidoreductase subunit N compare
MPMX20_03209 -1.3 -3.3 NADH-quinone oxidoreductase subunit K compare
MPMX20_02864 -1.3 -3.3 hypothetical protein compare
MPMX20_01029 -1.3 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_04038 -1.3 -4.4 Glucitol operon repressor compare
MPMX20_02896 -1.3 -9.4 Lysozyme RrrD compare
MPMX20_01156 -1.3 -2.7 hypothetical protein compare
MPMX20_01021 -1.3 -4.1 Cytochrome bo(3) ubiquinol oxidase subunit 3 compare
MPMX20_02919 -1.3 -5.9 hypothetical protein compare
MPMX20_02767 -1.2 -3.4 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_02920 -1.2 -6.4 hypothetical protein compare
MPMX20_01942 -1.2 -4.9 HTH-type transcriptional repressor BluR compare
MPMX20_01768 -1.2 -1.7 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_04640 -1.2 -2.6 Phosphate transport system permease protein PstC compare
MPMX20_00197 -1.2 -1.1 tRNA-Tyr compare
MPMX20_02927 -1.2 -4.2 hypothetical protein compare
MPMX20_02478 -1.2 -4.7 Putrescine export system ATP-binding protein SapF compare
MPMX20_01382 -1.2 -2.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_04443 -1.2 -1.8 Sec-independent protein translocase protein TatB compare
MPMX20_03020 -1.2 -5.1 hypothetical protein compare
MPMX20_02875 -1.1 -6.7 hypothetical protein compare
MPMX20_02898 -1.1 -5.8 hypothetical protein compare
MPMX20_03447 -1.1 -4.7 ATP-dependent RNA helicase SrmB compare
MPMX20_02884 -1.1 -9.5 hypothetical protein compare
MPMX20_02873 -1.1 -5.0 hypothetical protein compare
MPMX20_02477 -1.1 -3.2 Peptide transport system ATP-binding protein SapD compare
MPMX20_00086 -1.1 -3.6 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_00537 -1.1 -6.0 Trehalose-6-phosphate hydrolase compare
MPMX20_00899 -1.1 -1.5 Ribonuclease HI compare
MPMX20_02895 -1.1 -6.5 hypothetical protein compare
MPMX20_00480 -1.1 -1.8 50S ribosomal protein L9 compare
MPMX20_04279 -1.1 -1.6 Shikimate kinase 1 compare
MPMX20_03012 -1.1 -6.0 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_00514 -1.1 -4.9 Fructose-1,6-bisphosphatase class 1 compare
MPMX20_02645 -1.1 -3.6 Ribosome-binding ATPase YchF compare
MPMX20_01352 -1.1 -6.1 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_04140 -1.1 -6.3 Malate dehydrogenase compare
MPMX20_03382 -1.1 -0.7 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_02866 -1.1 -7.7 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase compare
MPMX20_04466 -1.1 -2.9 hypothetical protein compare
MPMX20_02888 -1.1 -5.2 hypothetical protein compare
MPMX20_04276 -1.1 -3.4 DNA adenine methylase compare
MPMX20_04170 -1.0 -2.2 DNA-binding protein Fis compare
MPMX20_04309 -1.0 -3.5 Aerobic glycerol-3-phosphate dehydrogenase compare
MPMX20_02768 -1.0 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_04110 -1.0 -3.5 Nitrogen regulatory protein compare
MPMX20_01550 -1.0 -1.5 Thioredoxin reductase compare
MPMX20_03391 -1.0 -2.4 hypothetical protein compare
MPMX20_02863 -1.0 -8.1 hypothetical protein compare
MPMX20_03015 -1.0 -8.3 Phosphoglucosamine mutase compare
MPMX20_01022 -1.0 -5.5 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
MPMX20_03806 -1.0 -2.9 hypothetical protein compare
MPMX20_03016 -1.0 -7.8 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_03214 -1.0 -4.1 NADH-quinone oxidoreductase subunit F compare
MPMX20_02867 -1.0 -5.5 hypothetical protein compare
MPMX20_04374 -1.0 -2.6 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_02890 -1.0 -6.4 hypothetical protein compare
MPMX20_02871 -1.0 -4.8 hypothetical protein compare
MPMX20_02880 -1.0 -7.8 hypothetical protein compare
MPMX20_03983 -1.0 -2.8 hypothetical protein compare
MPMX20_01357 -1.0 -4.2 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_04153 -1.0 -4.3 Ribonuclease G compare
MPMX20_01356 -1.0 -4.5 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_02874 -1.0 -7.8 hypothetical protein compare
MPMX20_02930 -1.0 -4.2 hypothetical protein compare
MPMX20_02877 -0.9 -6.9 hypothetical protein compare
MPMX20_02918 -0.9 -4.5 hypothetical protein compare
MPMX20_03754 -0.9 -3.7 Flavodoxin 2 compare
MPMX20_02889 -0.9 -6.8 hypothetical protein compare
MPMX20_04375 -0.9 -3.3 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_03850 -0.9 -2.9 Biopolymer transport protein ExbD compare
MPMX20_02928 -0.9 -2.5 hypothetical protein compare
MPMX20_02891 -0.9 -5.9 hypothetical protein compare
MPMX20_03290 -0.9 -1.8 tRNA-Ala compare
MPMX20_02878 -0.9 -3.3 hypothetical protein compare
MPMX20_02901 -0.9 -6.1 hypothetical protein compare
MPMX20_03562 -0.9 -3.3 Transcriptional repressor MprA compare
MPMX20_02883 -0.9 -4.3 hypothetical protein compare
MPMX20_02870 -0.9 -7.7 hypothetical protein compare
MPMX20_00134 -0.9 -4.3 Mannitol-1-phosphate 5-dehydrogenase compare
MPMX20_02924 -0.9 -4.8 hypothetical protein compare
MPMX20_02925 -0.9 -6.9 hypothetical protein compare
MPMX20_02876 -0.9 -3.3 hypothetical protein compare
MPMX20_02872 -0.9 -3.7 hypothetical protein compare
MPMX20_02882 -0.9 -4.5 hypothetical protein compare
MPMX20_01097 -0.9 -3.7 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_00388 -0.9 -0.8 hypothetical protein compare
MPMX20_03285 -0.9 -1.1 hypothetical protein compare
MPMX20_02010 -0.9 -3.5 Ion-translocating oxidoreductase complex subunit B compare
MPMX20_04162 -0.9 -2.6 3-dehydroquinate dehydratase compare
MPMX20_02909 -0.9 -5.4 hypothetical protein compare
MPMX20_02021 -0.9 -4.4 Fumarate hydratase class I, aerobic compare
MPMX20_03580 -0.9 -3.0 Protein RecA compare
MPMX20_03217 -0.9 -2.8 NADH-quinone oxidoreductase subunit B compare
MPMX20_02868 -0.8 -4.9 Protein UmuD compare
MPMX20_01135 -0.8 -3.3 HTH-type transcriptional regulator BetI compare
MPMX20_03443 -0.8 -2.3 Anti-sigma-E factor RseA compare
MPMX20_03742 -0.8 -4.2 HTH-type transcriptional regulator GalR compare
MPMX20_02672 -0.8 -6.8 hypothetical protein compare
MPMX20_02892 -0.8 -5.2 hypothetical protein compare
MPMX20_03216 -0.8 -4.4 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_03636 -0.8 -3.3 Adenylyl-sulfate kinase compare
MPMX20_04467 -0.8 -3.9 Diaminopimelate epimerase compare
MPMX20_00209 -0.8 -2.7 PTS system N,N'-diacetylchitobiose-specific EIIA component compare
MPMX20_02862 -0.8 -5.7 hypothetical protein compare
MPMX20_00093 -0.8 -3.2 Orotate phosphoribosyltransferase compare
MPMX20_00722 -0.8 -3.8 Na(+)/H(+) antiporter NhaA compare
MPMX20_00673 -0.8 -4.2 Peptide chain release factor RF3 compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in mixed community experiments

For mixed community Mixed culture; Variovorax sp. TBS_050B 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=outgrowth_in_LB_with_kan50 across organisms