Experiment set1S90 for Enterobacter sp. TBS_079

Compare to:

Outgrowth from agar plate co-culture with Inquilinus sp. 005-A5

200 most important genes:

  gene name fitness t score description  
MPMX20_01950 -5.9 -4.1 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_04768 -5.6 -26.7 hypothetical protein compare
MPMX20_01286 -5.3 -3.1 Sec-independent protein translocase protein TatE compare
MPMX20_01901 -4.9 -3.4 Integration host factor subunit alpha compare
MPMX20_04442 -4.9 -3.4 Sec-independent protein translocase protein TatC compare
MPMX20_00453 -4.6 -3.1 RNA-binding protein Hfq compare
MPMX20_01368 -4.0 -5.4 hypothetical protein compare
MPMX20_04444 -3.9 -1.9 Sec-independent protein translocase protein TatA compare
MPMX20_03986 -3.7 -4.4 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_02591 -3.6 -7.9 DNA-binding protein H-NS compare
MPMX20_00749 -3.6 -8.4 Chaperone SurA compare
MPMX20_01370 -3.6 -3.4 Peptidoglycan-associated lipoprotein compare
MPMX20_02476 -3.2 -3.8 Putrescine export system permease protein SapC compare
MPMX20_01369 -3.1 -8.3 Tol-Pal system protein TolB compare
MPMX20_01552 -3.0 -6.0 hypothetical protein compare
MPMX20_01354 -2.9 -2.9 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_01367 -2.8 -6.7 Tol-Pal system protein TolR compare
MPMX20_03390 -2.7 -5.3 Outer membrane protein assembly factor BamB compare
MPMX20_02576 -2.7 -4.1 Protein TonB compare
MPMX20_01355 -2.7 -1.3 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_04595 -2.7 -1.8 Glutamine synthetase compare
MPMX20_03010 -2.7 -5.0 UDP-glucose 4-epimerase compare
MPMX20_04532 -2.6 -3.0 Met repressor compare
MPMX20_01366 -2.5 -4.5 Tol-Pal system protein TolQ compare
MPMX20_01570 -2.5 -2.6 Integration host factor subunit beta compare
MPMX20_03018 -2.5 -5.3 hypothetical protein compare
MPMX20_03021 -2.5 -9.0 hypothetical protein compare
MPMX20_00106 -2.4 -4.6 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_02701 -2.4 -2.9 Fatty acid metabolism regulator protein compare
MPMX20_03408 -2.3 -2.7 Co-chaperone protein HscB compare
MPMX20_02766 -2.3 -4.7 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_04483 -2.3 -2.7 Lipid III flippase compare
MPMX20_03685 -2.2 -4.2 RecBCD enzyme subunit RecC compare
MPMX20_01768 -2.0 -2.9 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_03683 -2.0 -2.4 RecBCD enzyme subunit RecB compare
MPMX20_04530 -2.0 -7.9 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_01550 -2.0 -2.6 Thioredoxin reductase compare
MPMX20_04639 -2.0 -1.5 Phosphate-binding protein PstS compare
MPMX20_02768 -2.0 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_03022 -1.9 -1.9 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_03440 -1.9 -5.0 Elongation factor 4 compare
MPMX20_03019 -1.9 -12.1 hypothetical protein compare
MPMX20_00102 -1.9 -1.3 hypothetical protein compare
MPMX20_03490 -1.9 -3.9 SsrA-binding protein compare
MPMX20_04119 -1.9 -2.7 DNA polymerase III subunit chi compare
MPMX20_01334 -1.9 -5.7 Phosphoglucomutase compare
MPMX20_03753 -1.9 -5.2 Tyrosine recombinase XerD compare
MPMX20_00807 -1.8 -4.3 Pyruvate dehydrogenase E1 component compare
MPMX20_01607 -1.8 -3.8 Outer membrane protein A compare
MPMX20_02826 -1.8 -2.1 Cold shock-like protein CspB compare
MPMX20_04440 -1.8 -1.3 Transcription antitermination protein RfaH compare
MPMX20_01030 -1.8 -6.3 Lon protease compare
MPMX20_04463 -1.7 -5.7 DNA helicase II compare
MPMX20_04309 -1.7 -5.4 Aerobic glycerol-3-phosphate dehydrogenase compare
MPMX20_00480 -1.7 -3.1 50S ribosomal protein L9 compare
MPMX20_04272 -1.7 -1.6 hypothetical protein compare
MPMX20_04641 -1.7 -3.1 Phosphate transport system permease protein PstA compare
MPMX20_03209 -1.7 -1.6 NADH-quinone oxidoreductase subunit K compare
MPMX20_04642 -1.6 -2.1 Phosphate import ATP-binding protein PstB compare
MPMX20_02893 -1.6 -4.5 hypothetical protein compare
MPMX20_04650 -1.6 -2.7 tRNA modification GTPase MnmE compare
MPMX20_04301 -1.6 -2.4 Fe/S biogenesis protein NfuA compare
MPMX20_03090 -1.6 -1.8 Methionine--tRNA ligase compare
MPMX20_04197 -1.6 -5.0 Trk system potassium uptake protein TrkA compare
MPMX20_04465 -1.6 -4.8 Tyrosine recombinase XerC compare
MPMX20_04278 -1.5 -4.9 3-dehydroquinate synthase compare
MPMX20_00812 -1.5 -5.2 Aconitate hydratase B compare
MPMX20_04443 -1.5 -2.0 Sec-independent protein translocase protein TatB compare
MPMX20_01028 -1.5 -2.0 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_03310 -1.5 -3.5 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_00747 -1.5 -3.6 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_01549 -1.4 -3.1 ATP-binding/permease protein CydD compare
MPMX20_04489 -1.4 -9.0 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_00109 -1.4 -9.9 hypothetical protein compare
MPMX20_02920 -1.4 -6.6 hypothetical protein compare
MPMX20_00721 -1.4 -2.8 Chaperone protein DnaJ compare
MPMX20_01350 -1.4 -3.9 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_02885 -1.4 -6.3 hypothetical protein compare
MPMX20_00110 -1.4 -9.0 hypothetical protein compare
MPMX20_03095 -1.4 -1.4 hypothetical protein compare
MPMX20_00108 -1.4 -9.2 hypothetical protein compare
MPMX20_03267 -1.3 -2.0 Phosphohistidine phosphatase SixA compare
MPMX20_01333 -1.3 -3.0 Negative modulator of initiation of replication compare
MPMX20_03850 -1.3 -3.3 Biopolymer transport protein ExbD compare
MPMX20_02864 -1.3 -4.0 hypothetical protein compare
MPMX20_02393 -1.3 -1.5 hypothetical protein compare
MPMX20_03308 -1.3 -3.3 Cysteine synthase A compare
MPMX20_02896 -1.3 -10.4 Lysozyme RrrD compare
MPMX20_02574 -1.3 -2.1 putative intracellular septation protein A compare
MPMX20_00105 -1.3 -7.7 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_04306 -1.3 -4.6 Glycerol-3-phosphate regulon repressor compare
MPMX20_01029 -1.3 -2.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_02869 -1.3 -9.9 hypothetical protein compare
MPMX20_02882 -1.3 -7.0 hypothetical protein compare
MPMX20_00570 -1.3 -8.0 putative BsuMI modification methylase subunit YdiO compare
MPMX20_00388 -1.2 -0.9 hypothetical protein compare
MPMX20_03285 -1.2 -1.2 hypothetical protein compare
MPMX20_02919 -1.2 -5.0 hypothetical protein compare
MPMX20_02890 -1.2 -7.4 hypothetical protein compare
MPMX20_03364 -1.2 -3.1 hypothetical protein compare
MPMX20_00720 -1.2 -1.4 Chaperone protein DnaK compare
MPMX20_04491 -1.2 -3.3 Thioredoxin 1 compare
MPMX20_02767 -1.2 -1.9 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_02895 -1.2 -5.6 hypothetical protein compare
MPMX20_02886 -1.1 -6.6 hypothetical protein compare
MPMX20_02891 -1.1 -7.1 hypothetical protein compare
MPMX20_02892 -1.1 -6.7 hypothetical protein compare
MPMX20_00086 -1.1 -1.8 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_02918 -1.1 -3.7 hypothetical protein compare
MPMX20_02884 -1.1 -7.0 hypothetical protein compare
MPMX20_02873 -1.1 -5.6 hypothetical protein compare
MPMX20_02883 -1.1 -5.1 hypothetical protein compare
MPMX20_03487 -1.1 -3.9 Outer membrane protein assembly factor BamE compare
MPMX20_02794 -1.1 -3.5 hypothetical protein compare
MPMX20_02876 -1.1 -4.1 hypothetical protein compare
MPMX20_02872 -1.0 -6.2 hypothetical protein compare
MPMX20_01362 -1.0 -3.4 Cytochrome bd-I ubiquinol oxidase subunit 2 compare
MPMX20_03163 -1.0 -1.5 hypothetical protein compare
MPMX20_03447 -1.0 -3.6 ATP-dependent RNA helicase SrmB compare
MPMX20_01303 -1.0 -2.8 Glutamine transport ATP-binding protein GlnQ compare
MPMX20_03409 -1.0 -1.7 Iron-binding protein IscA compare
MPMX20_02478 -1.0 -3.7 Putrescine export system ATP-binding protein SapF compare
MPMX20_03020 -1.0 -3.0 hypothetical protein compare
MPMX20_02862 -1.0 -6.4 hypothetical protein compare
MPMX20_02875 -1.0 -6.6 hypothetical protein compare
MPMX20_03902 -1.0 -1.5 Urease accessory protein UreE compare
MPMX20_02878 -1.0 -4.6 hypothetical protein compare
MPMX20_03754 -1.0 -3.3 Flavodoxin 2 compare
MPMX20_02879 -1.0 -2.4 hypothetical protein compare
MPMX20_02102 -1.0 -1.7 hypothetical protein compare
MPMX20_01433 -1.0 -3.2 putative protein McbA compare
MPMX20_03264 -1.0 -2.4 Chorismate synthase compare
MPMX20_02889 -1.0 -6.1 hypothetical protein compare
MPMX20_04640 -0.9 -1.6 Phosphate transport system permease protein PstC compare
MPMX20_00775 -0.9 -2.7 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_04731 -0.9 -4.0 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_02907 -0.9 -4.8 hypothetical protein compare
MPMX20_03756 -0.9 -2.7 FAD assembly factor SdhE compare
MPMX20_03580 -0.9 -2.9 Protein RecA compare
MPMX20_03407 -0.9 -1.8 Chaperone protein HscA compare
MPMX20_02898 -0.9 -5.8 hypothetical protein compare
MPMX20_03013 -0.9 -4.9 dTDP-glucose 4,6-dehydratase compare
MPMX20_02860 -0.9 -4.9 hypothetical protein compare
MPMX20_00745 -0.9 -2.9 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_02874 -0.9 -7.4 hypothetical protein compare
MPMX20_02769 -0.9 -2.4 putative transcriptional regulatory protein YebC compare
MPMX20_02645 -0.9 -3.6 Ribosome-binding ATPase YchF compare
MPMX20_02894 -0.9 -2.9 hypothetical protein compare
MPMX20_03443 -0.9 -2.2 Anti-sigma-E factor RseA compare
MPMX20_02906 -0.9 -5.1 hypothetical protein compare
MPMX20_01357 -0.9 -2.1 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_03216 -0.9 -4.7 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_00537 -0.9 -5.1 Trehalose-6-phosphate hydrolase compare
MPMX20_02770 -0.9 -2.3 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_02931 -0.9 -5.5 hypothetical protein compare
MPMX20_04466 -0.9 -2.6 hypothetical protein compare
MPMX20_02867 -0.9 -4.5 hypothetical protein compare
MPMX20_01765 -0.9 -2.1 Ribonuclease E compare
MPMX20_04038 -0.9 -3.2 Glucitol operon repressor compare
MPMX20_04275 -0.9 -1.4 Ribulose-phosphate 3-epimerase compare
MPMX20_00452 -0.8 -4.1 tRNA dimethylallyltransferase compare
MPMX20_02646 -0.8 -1.0 hypothetical protein compare
MPMX20_04427 -0.8 -0.8 5S ribosomal RNA compare
MPMX20_04686 -0.8 -3.2 Phospholipase D compare
MPMX20_02668 -0.8 -1.6 hypothetical protein compare
MPMX20_01097 -0.8 -3.0 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_02888 -0.8 -3.8 hypothetical protein compare
MPMX20_02870 -0.8 -6.4 hypothetical protein compare
MPMX20_02929 -0.8 -1.6 hypothetical protein compare
MPMX20_02903 -0.8 -3.0 hypothetical protein compare
MPMX20_02916 -0.8 -2.1 hypothetical protein compare
MPMX20_03983 -0.8 -2.3 hypothetical protein compare
MPMX20_03882 -0.8 -4.0 Outer membrane protein TolC compare
MPMX20_01018 -0.8 -3.3 Inner membrane transport protein YajR compare
MPMX20_02887 -0.8 -3.0 hypothetical protein compare
MPMX20_02121 -0.8 -2.6 hypothetical protein compare
MPMX20_00728 -0.8 -0.9 FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase compare
MPMX20_04385 -0.8 -3.3 hypothetical protein compare
MPMX20_03660 -0.8 -1.8 hypothetical protein compare
MPMX20_03463 -0.8 -2.6 Ribosomal large subunit pseudouridine synthase D compare
MPMX20_03422 -0.8 -2.0 Nitrogen regulatory protein P-II compare
MPMX20_03075 -0.8 -2.8 HTH-type transcriptional repressor NagR compare
MPMX20_02880 -0.8 -5.9 hypothetical protein compare
MPMX20_02863 -0.8 -6.2 hypothetical protein compare
MPMX20_03433 -0.8 -2.3 Ferredoxin YfhL compare
MPMX20_04276 -0.8 -2.8 DNA adenine methylase compare
MPMX20_02901 -0.8 -5.4 hypothetical protein compare
MPMX20_02928 -0.8 -2.2 hypothetical protein compare
MPMX20_03641 -0.8 -3.8 Phosphoadenosine phosphosulfate reductase compare
MPMX20_01101 -0.8 -1.0 Peptidyl-prolyl cis-trans isomerase B compare
MPMX20_03012 -0.8 -4.0 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_02861 -0.8 -4.2 hypothetical protein compare
MPMX20_01984 -0.8 -1.0 Ribonuclease T compare
MPMX20_01098 -0.8 -1.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_02877 -0.7 -3.0 hypothetical protein compare
MPMX20_03883 -0.7 -4.1 hypothetical protein compare
MPMX20_02902 -0.7 -4.1 Serine/threonine-protein phosphatase 1 compare
MPMX20_01135 -0.7 -2.7 HTH-type transcriptional regulator BetI compare
MPMX20_04730 -0.7 -2.9 hypothetical protein compare
MPMX20_02930 -0.7 -4.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Enterobacter sp. TBS_079 in mixed community experiments

For mixed community Mixed culture; Inquilinus sp. 005-A5 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=outgrowth_in_LB_with_kan50 across organisms