Experiment set1S88 for Enterobacter sp. TBS_079

Compare to:

Outgrowth from agar plate co-culture with Achromobacter sp. TBS_048

200 most important genes:

  gene name fitness t score description  
MPMX20_01950 -5.7 -3.9 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_01366 -5.5 -3.8 Tol-Pal system protein TolQ compare
MPMX20_04768 -5.3 -19.9 hypothetical protein compare
MPMX20_03986 -4.8 -4.7 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_01355 -4.2 -1.5 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_01368 -4.2 -5.5 hypothetical protein compare
MPMX20_01367 -4.2 -8.0 Tol-Pal system protein TolR compare
MPMX20_01369 -4.1 -10.6 Tol-Pal system protein TolB compare
MPMX20_02591 -4.1 -6.9 DNA-binding protein H-NS compare
MPMX20_01570 -3.9 -3.7 Integration host factor subunit beta compare
MPMX20_03309 -3.9 -2.6 Phosphocarrier protein HPr compare
MPMX20_04442 -3.9 -5.9 Sec-independent protein translocase protein TatC compare
MPMX20_03409 -3.8 -2.6 Iron-binding protein IscA compare
MPMX20_03408 -3.7 -2.5 Co-chaperone protein HscB compare
MPMX20_02767 -3.7 -5.9 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_00749 -3.6 -7.7 Chaperone SurA compare
MPMX20_04518 -3.5 -6.8 Soluble pyridine nucleotide transhydrogenase compare
MPMX20_01029 -3.4 -2.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_01901 -3.3 -3.0 Integration host factor subunit alpha compare
MPMX20_03018 -3.3 -3.2 hypothetical protein compare
MPMX20_01370 -3.3 -3.2 Peptidoglycan-associated lipoprotein compare
MPMX20_03390 -3.3 -7.7 Outer membrane protein assembly factor BamB compare
MPMX20_04301 -3.2 -3.6 Fe/S biogenesis protein NfuA compare
MPMX20_02701 -3.2 -3.1 Fatty acid metabolism regulator protein compare
MPMX20_02574 -3.2 -2.2 putative intracellular septation protein A compare
MPMX20_03010 -3.1 -2.1 UDP-glucose 4-epimerase compare
MPMX20_00453 -3.1 -2.7 RNA-binding protein Hfq compare
MPMX20_04440 -3.0 -2.0 Transcription antitermination protein RfaH compare
MPMX20_00720 -3.0 -2.2 Chaperone protein DnaK compare
MPMX20_04119 -3.0 -2.9 DNA polymerase III subunit chi compare
MPMX20_01552 -2.8 -5.7 hypothetical protein compare
MPMX20_01741 -2.8 -5.6 Dihydroorotase compare
MPMX20_00109 -2.8 -17.0 hypothetical protein compare
MPMX20_01334 -2.7 -7.5 Phosphoglucomutase compare
MPMX20_04443 -2.7 -3.7 Sec-independent protein translocase protein TatB compare
MPMX20_02769 -2.7 -2.8 putative transcriptional regulatory protein YebC compare
MPMX20_04595 -2.6 -1.8 Glutamine synthetase compare
MPMX20_04668 -2.6 -2.5 hypothetical protein compare
MPMX20_03021 -2.6 -7.9 hypothetical protein compare
MPMX20_04483 -2.6 -1.8 Lipid III flippase compare
MPMX20_00747 -2.6 -4.5 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_03019 -2.5 -13.8 hypothetical protein compare
MPMX20_04650 -2.5 -3.4 tRNA modification GTPase MnmE compare
MPMX20_01030 -2.5 -8.3 Lon protease compare
MPMX20_01286 -2.4 -2.0 Sec-independent protein translocase protein TatE compare
MPMX20_02766 -2.4 -3.4 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_03685 -2.4 -3.6 RecBCD enzyme subunit RecC compare
MPMX20_04601 -2.4 -3.6 DNA polymerase I compare
MPMX20_04374 -2.4 -3.0 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
MPMX20_01028 -2.4 -1.6 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_03017 -2.4 -10.0 hypothetical protein compare
MPMX20_00544 -2.3 -6.8 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_02295 -2.3 -2.0 hypothetical protein compare
MPMX20_04642 -2.3 -2.7 Phosphate import ATP-binding protein PstB compare
MPMX20_00105 -2.3 -10.2 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_04279 -2.3 -3.0 Shikimate kinase 1 compare
MPMX20_03479 -2.3 -1.9 30S ribosomal protein S16 compare
MPMX20_00899 -2.3 -2.5 Ribonuclease HI compare
MPMX20_01351 -2.3 -4.8 Succinate dehydrogenase hydrophobic membrane anchor subunit compare
MPMX20_00108 -2.3 -14.7 hypothetical protein compare
MPMX20_03310 -2.2 -4.6 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_04489 -2.2 -12.1 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_02881 -2.2 -2.5 hypothetical protein compare
MPMX20_00110 -2.2 -12.5 hypothetical protein compare
MPMX20_04530 -2.2 -8.2 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_03308 -2.1 -6.8 Cysteine synthase A compare
MPMX20_03208 -2.1 -5.5 NADH-quinone oxidoreductase subunit L compare
MPMX20_01352 -2.1 -7.2 Succinate dehydrogenase flavoprotein subunit compare
MPMX20_04104 -2.1 -3.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC compare
MPMX20_01550 -2.1 -2.3 Thioredoxin reductase compare
MPMX20_03022 -2.1 -1.4 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_00812 -2.1 -7.5 Aconitate hydratase B compare
MPMX20_04626 -2.1 -3.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_02869 -2.1 -14.3 hypothetical protein compare
MPMX20_04469 -2.1 -3.8 Adenylate cyclase compare
MPMX20_04275 -2.1 -3.0 Ribulose-phosphate 3-epimerase compare
MPMX20_04278 -2.0 -5.1 3-dehydroquinate synthase compare
MPMX20_03756 -2.0 -2.8 FAD assembly factor SdhE compare
MPMX20_02896 -2.0 -9.9 Lysozyme RrrD compare
MPMX20_01549 -2.0 -4.0 ATP-binding/permease protein CydD compare
MPMX20_01382 -2.0 -2.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_01607 -2.0 -4.8 Outer membrane protein A compare
MPMX20_03338 -1.9 -3.5 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_00106 -1.9 -5.0 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_03211 -1.9 -3.4 NADH-quinone oxidoreductase subunit I compare
MPMX20_04141 -1.9 -3.4 Arginine repressor compare
MPMX20_03440 -1.9 -4.9 Elongation factor 4 compare
MPMX20_03013 -1.9 -8.0 dTDP-glucose 4,6-dehydratase compare
MPMX20_03153 -1.9 -2.3 hypothetical protein compare
MPMX20_00102 -1.9 -1.3 hypothetical protein compare
MPMX20_02919 -1.9 -5.6 hypothetical protein compare
MPMX20_02494 -1.8 -4.9 Orotidine 5'-phosphate decarboxylase compare
MPMX20_01357 -1.8 -5.6 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_04463 -1.8 -5.8 DNA helicase II compare
MPMX20_00722 -1.8 -6.0 Na(+)/H(+) antiporter NhaA compare
MPMX20_04465 -1.8 -5.3 Tyrosine recombinase XerC compare
MPMX20_02535 -1.8 -2.5 Pyrimidine-specific ribonucleoside hydrolase RihB compare
MPMX20_03683 -1.8 -2.9 RecBCD enzyme subunit RecB compare
MPMX20_03407 -1.8 -3.0 Chaperone protein HscA compare
MPMX20_02885 -1.8 -6.4 hypothetical protein compare
MPMX20_02393 -1.8 -1.5 hypothetical protein compare
MPMX20_03580 -1.7 -4.4 Protein RecA compare
MPMX20_00721 -1.7 -2.9 Chaperone protein DnaJ compare
MPMX20_00740 -1.7 -6.5 Carbamoyl-phosphate synthase large chain compare
MPMX20_01350 -1.7 -3.7 Succinate dehydrogenase cytochrome b556 subunit compare
MPMX20_04140 -1.7 -7.0 Malate dehydrogenase compare
MPMX20_04153 -1.7 -5.1 Ribonuclease G compare
MPMX20_01021 -1.7 -3.2 Cytochrome bo(3) ubiquinol oxidase subunit 3 compare
MPMX20_03015 -1.6 -12.0 Phosphoglucosamine mutase compare
MPMX20_03020 -1.6 -4.6 hypothetical protein compare
MPMX20_00807 -1.6 -3.6 Pyruvate dehydrogenase E1 component compare
MPMX20_00093 -1.6 -5.5 Orotate phosphoribosyltransferase compare
MPMX20_01019 -1.6 -4.1 Protoheme IX farnesyltransferase compare
MPMX20_00998 -1.6 -2.2 Sec translocon accessory complex subunit YajC compare
MPMX20_03443 -1.6 -3.2 Anti-sigma-E factor RseA compare
MPMX20_02920 -1.6 -6.2 hypothetical protein compare
MPMX20_02895 -1.6 -6.2 hypothetical protein compare
MPMX20_02576 -1.6 -2.4 Protein TonB compare
MPMX20_04162 -1.6 -3.1 3-dehydroquinate dehydratase compare
MPMX20_00570 -1.6 -9.4 putative BsuMI modification methylase subunit YdiO compare
MPMX20_03763 -1.5 -3.0 Glycine cleavage system H protein compare
MPMX20_02203 -1.5 -2.4 hypothetical protein compare
MPMX20_01353 -1.5 -3.8 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_03174 -1.5 -4.3 FAD:protein FMN transferase compare
MPMX20_03212 -1.5 -3.8 NADH-quinone oxidoreductase subunit H compare
MPMX20_01354 -1.5 -1.9 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_04559 -1.5 -2.8 Superoxide dismutase [Mn] compare
MPMX20_00537 -1.5 -7.4 Trehalose-6-phosphate hydrolase compare
MPMX20_02882 -1.5 -7.6 hypothetical protein compare
MPMX20_02478 -1.5 -4.9 Putrescine export system ATP-binding protein SapF compare
MPMX20_02645 -1.5 -4.8 Ribosome-binding ATPase YchF compare
MPMX20_00739 -1.4 -3.3 Carbamoyl-phosphate synthase small chain compare
MPMX20_03217 -1.4 -3.3 NADH-quinone oxidoreductase subunit B compare
MPMX20_04641 -1.4 -2.2 Phosphate transport system permease protein PstA compare
MPMX20_03264 -1.4 -3.5 Chorismate synthase compare
MPMX20_03214 -1.4 -5.4 NADH-quinone oxidoreductase subunit F compare
MPMX20_03488 -1.4 -3.0 Persistence and stress-resistance antitoxin PasI compare
MPMX20_01548 -1.4 -3.1 putative ABC transporter ATP-binding/permease protein compare
MPMX20_02877 -1.4 -5.7 hypothetical protein compare
MPMX20_04079 -1.4 -2.4 Protein-export membrane protein SecG compare
MPMX20_00773 -1.4 -5.4 Catabolite repressor/activator compare
MPMX20_01972 -1.4 -1.2 tRNA-Val compare
MPMX20_03016 -1.4 -9.5 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_04197 -1.4 -4.0 Trk system potassium uptake protein TrkA compare
MPMX20_02876 -1.4 -4.7 hypothetical protein compare
MPMX20_02871 -1.4 -4.4 hypothetical protein compare
MPMX20_02997 -1.4 -6.2 Exodeoxyribonuclease I compare
MPMX20_01567 -1.4 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_02875 -1.3 -7.6 hypothetical protein compare
MPMX20_02863 -1.3 -9.9 hypothetical protein compare
MPMX20_02862 -1.3 -7.6 hypothetical protein compare
MPMX20_01768 -1.3 -2.0 Large ribosomal RNA subunit accumulation protein YceD compare
MPMX20_02918 -1.3 -3.3 hypothetical protein compare
MPMX20_04640 -1.3 -2.4 Phosphate transport system permease protein PstC compare
MPMX20_02929 -1.3 -2.9 hypothetical protein compare
MPMX20_04504 -1.3 -3.1 hypothetical protein compare
MPMX20_04038 -1.3 -3.0 Glucitol operon repressor compare
MPMX20_03207 -1.3 -3.3 NADH-quinone oxidoreductase subunit M compare
MPMX20_02025 -1.3 -2.9 hypothetical protein compare
MPMX20_02884 -1.2 -7.4 hypothetical protein compare
MPMX20_02890 -1.2 -7.1 hypothetical protein compare
MPMX20_02913 -1.2 -2.4 hypothetical protein compare
MPMX20_02477 -1.2 -2.8 Peptide transport system ATP-binding protein SapD compare
MPMX20_00419 -1.2 -6.3 Aspartate ammonia-lyase compare
MPMX20_04309 -1.2 -4.0 Aerobic glycerol-3-phosphate dehydrogenase compare
MPMX20_03216 -1.2 -4.6 NADH-quinone oxidoreductase subunit C/D compare
MPMX20_03851 -1.2 -5.1 Biopolymer transport protein ExbB compare
MPMX20_00226 -1.2 -4.5 Bifunctional purine biosynthesis protein PurH compare
MPMX20_02891 -1.2 -7.2 hypothetical protein compare
MPMX20_03209 -1.2 -1.4 NADH-quinone oxidoreductase subunit K compare
MPMX20_00181 -1.2 -4.1 HTH-type transcriptional regulator KdgR compare
MPMX20_02887 -1.2 -4.9 hypothetical protein compare
MPMX20_03154 -1.2 -5.6 Inner membrane protein YejM compare
MPMX20_02898 -1.2 -6.6 hypothetical protein compare
MPMX20_01356 -1.2 -4.9 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_02866 -1.2 -7.5 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase compare
MPMX20_04730 -1.2 -3.8 hypothetical protein compare
MPMX20_02021 -1.2 -4.4 Fumarate hydratase class I, aerobic compare
MPMX20_00222 -1.2 -1.7 hypothetical protein compare
MPMX20_01020 -1.2 -1.2 Cytochrome bo(3) ubiquinol oxidase subunit 4 compare
MPMX20_02917 -1.2 -3.7 hypothetical protein compare
MPMX20_03490 -1.2 -2.5 SsrA-binding protein compare
MPMX20_02901 -1.2 -7.8 hypothetical protein compare
MPMX20_02874 -1.2 -8.6 hypothetical protein compare
MPMX20_02880 -1.2 -8.0 hypothetical protein compare
MPMX20_02916 -1.2 -3.3 hypothetical protein compare
MPMX20_01596 -1.2 -8.1 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_02372 -1.2 -2.6 HTH-type transcriptional repressor NsrR compare
MPMX20_03012 -1.2 -5.3 Glucose-1-phosphate thymidylyltransferase 1 compare
MPMX20_02892 -1.2 -7.4 hypothetical protein compare
MPMX20_01349 -1.2 -3.4 Citrate synthase compare
MPMX20_01022 -1.1 -5.3 Cytochrome bo(3) ubiquinol oxidase subunit 1 compare
MPMX20_04467 -1.1 -3.3 Diaminopimelate epimerase compare
MPMX20_00806 -1.1 -2.4 Pyruvate dehydrogenase complex repressor compare
MPMX20_03405 -1.1 -1.2 Protein IscX compare
MPMX20_02878 -1.1 -6.2 hypothetical protein compare
MPMX20_00107 -1.1 -4.3 Lipopolysaccharide core heptosyltransferase RfaQ compare
MPMX20_02886 -1.1 -5.1 hypothetical protein compare
MPMX20_00452 -1.1 -4.5 tRNA dimethylallyltransferase compare
MPMX20_03075 -1.1 -4.4 HTH-type transcriptional repressor NagR compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Achromobacter sp. TBS_048 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=outgrowth_in_LB_with_kan50 in Enterobacter sp. TBS_079

For mixed community Mixed culture; Achromobacter sp. TBS_048 1:1 starting OD to Enterobacter_TBS_079_ML3; Collection=outgrowth_in_LB_with_kan50 across organisms