Experiment set1S87 for Rhodanobacter denitrificans MT42

Compare to:

no stress control

200 most important genes:

  gene name fitness t score description  
LRK55_RS17725 -4.4 -3.0 preprotein translocase subunit SecG compare
LRK55_RS14540 -4.3 -2.9 protease HtpX compare
LRK55_RS03460 -4.1 -6.9 tetratricopeptide repeat protein compare
LRK55_RS12555 -4.1 -8.5 PTS fructose transporter subunit IIA compare
LRK55_RS04490 -4.0 -3.9 glycosyltransferase family 2 protein compare
LRK55_RS13955 -4.0 -10.4 excinuclease ABC subunit UvrB compare
LRK55_RS08345 -4.0 -2.7 GNAT family N-acetyltransferase compare
LRK55_RS05380 -4.0 -17.3 NAD-dependent epimerase/dehydratase family protein compare
LRK55_RS06430 -3.9 -13.4 TolC family outer membrane protein compare
LRK55_RS18105 -3.9 -2.7 glutamine-hydrolyzing GMP synthase compare
LRK55_RS00215 -3.9 -5.3 phosphate signaling complex protein PhoU compare
LRK55_RS13530 -3.8 -4.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
LRK55_RS05400 -3.8 -8.0 ABC transporter ATP-binding protein compare
LRK55_RS05405 -3.7 -6.2 ABC transporter permease compare
LRK55_RS18205 -3.7 -18.9 asparagine synthase B compare
LRK55_RS14925 -3.7 -14.6 excinuclease ABC subunit UvrA compare
LRK55_RS14410 -3.7 -11.3 rhomboid family intramembrane serine protease compare
LRK55_RS11300 -3.7 -5.5 indole-3-glycerol phosphate synthase TrpC compare
LRK55_RS00130 -3.7 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
LRK55_RS13125 -3.7 -6.2 flagellar biosynthesis anti-sigma factor FlgM compare
LRK55_RS00390 -3.6 -5.9 FtsH protease activity modulator HflK compare
LRK55_RS02645 -3.6 -2.5 rhomboid family intramembrane serine protease compare
LRK55_RS04500 -3.6 -9.3 phosphoribosylformylglycinamidine synthase compare
LRK55_RS11020 -3.5 -6.6 dihydrolipoyllysine-residue acetyltransferase compare
LRK55_RS05420 -3.5 -15.8 dTDP-glucose 4,6-dehydratase compare
LRK55_RS05425 -3.5 -13.7 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK55_RS06500 -3.5 -15.2 LTA synthase family protein compare
LRK55_RS16480 -3.5 -3.3 SurA N-terminal domain-containing protein compare
LRK55_RS05190 -3.4 -4.0 TetR/AcrR family transcriptional regulator compare
LRK55_RS04360 -3.4 -6.4 muramoyltetrapeptide carboxypeptidase compare
LRK55_RS00160 -3.4 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK55_RS16405 -3.4 -10.3 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE compare
LRK55_RS00470 -3.4 -4.0 methylisocitrate lyase compare
LRK55_RS01930 -3.4 -3.2 UvrD-helicase domain-containing protein compare
LRK55_RS12565 -3.4 -6.4 HPr(Ser) kinase/phosphatase compare
LRK55_RS06570 -3.4 -2.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
LRK55_RS11105 -3.4 -11.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK55_RS00445 -3.3 -7.0 OmpA family protein compare
LRK55_RS00120 -3.3 -10.1 excinuclease ABC subunit UvrC compare
LRK55_RS00385 -3.3 -3.9 protease modulator HflC compare
LRK55_RS14305 -3.3 -10.7 N-acetylmuramoyl-L-alanine amidase compare
LRK55_RS05305 -3.2 -17.0 glycosyltransferase family 2 protein compare
LRK55_RS00325 -3.2 -19.0 type I restriction endonuclease compare
LRK55_RS05310 -3.1 -13.5 glycosyltransferase family 2 protein compare
LRK55_RS04765 -3.1 -6.3 ADP-forming succinate--CoA ligase subunit beta compare
LRK55_RS18080 -3.1 -2.1 tetratricopeptide repeat protein compare
LRK55_RS01505 -3.1 -6.8 chorismate synthase compare
LRK55_RS13475 -3.1 -5.5 trypsin-like peptidase domain-containing protein compare
LRK55_RS05320 -3.1 -4.7 FAD-binding protein compare
LRK55_RS05285 -3.1 -2.1 adenylyl-sulfate kinase compare
LRK55_RS01865 -3.1 -10.7 NAD-glutamate dehydrogenase compare
LRK55_RS01925 -3.1 -4.1 exodeoxyribonuclease V subunit gamma compare
LRK55_RS14610 -3.1 -2.9 nicotinamide riboside transporter PnuC compare
LRK55_RS11260 -3.0 -1.8 hypothetical protein compare
LRK55_RS17835 -3.0 -5.2 molecular chaperone DnaJ compare
LRK55_RS16460 -3.0 -10.0 endopeptidase La compare
LRK55_RS06530 -3.0 -2.0 protein-disulfide reductase DsbD compare
LRK55_RS00180 -2.9 -7.7 high frequency lysogenization protein HflD compare
LRK55_RS12430 -2.9 -8.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK55_RS12560 -2.9 -9.5 RNase adapter RapZ compare
LRK55_RS13550 -2.9 -9.3 YhgN family NAAT transporter compare
LRK55_RS05390 -2.9 -21.9 rhamnan synthesis F family protein compare
LRK55_RS01045 -2.9 -5.5 MBL fold metallo-hydrolase compare
LRK55_RS13625 -2.9 -3.0 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK55_RS06630 -2.9 -4.3 rhodanese-like domain-containing protein compare
LRK55_RS13485 -2.9 -2.0 cytochrome bc complex cytochrome b subunit compare
LRK55_RS17910 -2.9 -14.8 glycosyl transferase family 4 compare
LRK55_RS16455 -2.8 -2.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK55_RS05360 -2.8 -18.9 hypothetical protein compare
LRK55_RS01465 -2.8 -16.9 tryptophan synthase subunit beta compare
LRK55_RS07245 -2.7 -2.6 ChrR family anti-sigma-E factor compare
LRK55_RS15720 -2.7 -5.2 aldehyde dehydrogenase family protein compare
LRK55_RS16385 -2.7 -11.9 VTT domain-containing protein compare
LRK55_RS02250 -2.6 -6.7 50S ribosomal protein L19 compare
LRK55_RS09465 -2.6 -8.0 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK55_RS03810 -2.6 -3.4 response regulator transcription factor compare
LRK55_RS06215 -2.6 -11.7 carboxy terminal-processing peptidase compare
LRK55_RS16445 -2.6 -5.9 trigger factor compare
LRK55_RS13630 -2.5 -8.7 beta-ketoacyl-ACP synthase I compare
LRK55_RS02290 -2.5 -8.2 50S ribosomal protein L9 compare
LRK55_RS05350 -2.5 -4.9 multidrug transporter compare
LRK55_RS14230 -2.5 -4.6 SCO family protein compare
LRK55_RS09035 -2.5 -9.2 DNA (cytosine-5-)-methyltransferase compare
LRK55_RS00450 -2.4 -1.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK55_RS06420 -2.4 -5.6 TetR/AcrR family transcriptional regulator compare
LRK55_RS04980 -2.4 -3.2 hypothetical protein compare
LRK55_RS05300 -2.4 -6.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK55_RS08300 -2.4 -8.4 tyrosine recombinase XerC compare
LRK55_RS01815 -2.3 -9.1 transcription-repair coupling factor compare
LRK55_RS12645 -2.3 -12.4 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK55_RS10880 -2.3 -15.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK55_RS10760 -2.2 -9.9 lipid-binding SYLF domain-containing protein compare
LRK55_RS04760 -2.2 -2.7 succinate--CoA ligase subunit alpha compare
LRK55_RS00105 -2.2 -2.2 tRNA-Gly compare
LRK55_RS08700 -2.2 -5.4 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
LRK55_RS03815 -2.1 -4.1 TonB-dependent receptor compare
LRK55_RS02575 -2.1 -5.1 hypothetical protein compare
LRK55_RS07040 -2.1 -8.3 pteridine reductase compare
LRK55_RS14220 -2.1 -3.7 cytochrome c oxidase assembly protein compare
LRK55_RS02635 -2.0 -5.4 RNA polymerase-associated protein RapA compare
LRK55_RS00550 -2.0 -10.5 translational GTPase TypA compare
LRK55_RS12410 -2.0 -11.0 glycosyltransferase family 2 protein compare
LRK55_RS10655 -2.0 -10.6 S41 family peptidase compare
LRK55_RS02725 -2.0 -8.6 alpha/beta fold hydrolase compare
LRK55_RS09455 -2.0 -3.5 oxygen-dependent coproporphyrinogen oxidase compare
LRK55_RS14885 -2.0 -7.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
LRK55_RS08720 -2.0 -6.7 orotate phosphoribosyltransferase compare
LRK55_RS11290 -2.0 -2.2 aminodeoxychorismate/anthranilate synthase component II compare
LRK55_RS17915 -2.0 -11.8 nucleoside-diphosphate sugar epimerase/dehydratase compare
LRK55_RS17545 -2.0 -11.2 replication-associated recombination protein A compare
LRK55_RS00165 -1.9 -5.5 ATP-dependent Clp protease adapter ClpS compare
LRK55_RS02950 -1.9 -3.0 integration host factor subunit alpha compare
LRK55_RS08705 -1.9 -5.6 dUTP diphosphatase compare
LRK55_RS09775 -1.9 -2.7 peptide deformylase compare
LRK55_RS11295 -1.9 -4.7 anthranilate phosphoribosyltransferase compare
LRK55_RS01480 -1.9 -3.5 tRNA pseudouridine(38-40) synthase TruA compare
LRK55_RS00585 -1.9 -2.1 SMC-Scp complex subunit ScpB compare
LRK55_RS01175 -1.8 -9.6 ABC transporter ATP-binding protein compare
LRK55_RS05480 -1.8 -4.9 DUF4398 domain-containing protein compare
LRK55_RS09705 -1.8 -3.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK55_RS06540 -1.8 -5.2 type II 3-dehydroquinate dehydratase compare
LRK55_RS12335 -1.8 -4.0 (2Fe-2S)-binding protein compare
LRK55_RS05540 -1.8 -8.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK55_RS01845 -1.7 -8.1 acyl-CoA dehydrogenase family protein compare
LRK55_RS14545 -1.7 -10.6 molecular chaperone HtpG compare
LRK55_RS03155 -1.7 -8.7 ribonuclease G compare
LRK55_RS10600 -1.7 -5.5 dihydroorotase compare
LRK55_RS19675 -1.7 -3.3 met regulon transcriptional regulator MetJ compare
LRK55_RS14695 -1.7 -7.1 recombinase RecA compare
LRK55_RS04390 -1.7 -4.3 transcriptional regulator NrdR compare
LRK55_RS11025 -1.7 -3.8 dihydrolipoyl dehydrogenase compare
LRK55_RS02860 -1.6 -6.9 nucleotidyltransferase family protein compare
LRK55_RS12330 -1.6 -10.5 molybdopterin-dependent oxidoreductase compare
LRK55_RS01460 -1.6 -6.8 tryptophan synthase subunit alpha compare
LRK55_RS03665 -1.6 -8.3 polysaccharide biosynthesis protein compare
LRK55_RS00190 -1.6 -3.8 ribonuclease T compare
LRK55_RS06950 -1.6 -6.7 c-type cytochrome compare
LRK55_RS16685 -1.6 -4.3 ribonuclease III compare
LRK55_RS16650 -1.5 -9.9 EAL domain-containing protein compare
LRK55_RS16340 -1.5 -2.3 phosphopyruvate hydratase compare
LRK55_RS09715 -1.5 -2.6 tetratricopeptide repeat protein compare
LRK55_RS03685 -1.5 -9.1 glycosyltransferase compare
LRK55_RS02215 -1.5 -5.0 phosphoglycolate phosphatase compare
LRK55_RS17740 -1.5 -8.3 response regulator compare
LRK55_RS13450 -1.5 -2.6 transporter associated domain-containing protein compare
LRK55_RS13685 -1.5 -1.8 molybdopterin molybdotransferase MoeA compare
LRK55_RS04515 -1.5 -6.2 site-specific tyrosine recombinase XerD compare
LRK55_RS00265 -1.5 -1.6 hypothetical protein compare
LRK55_RS12320 -1.5 -5.1 hypothetical protein compare
LRK55_RS14750 -1.4 -9.9 M48 family metalloprotease compare
LRK55_RS03645 -1.4 -11.0 hypothetical protein compare
LRK55_RS03655 -1.4 -7.3 GDP-L-fucose synthase compare
LRK55_RS03670 -1.4 -7.6 GDP-mannose 4,6-dehydratase compare
LRK55_RS02790 -1.4 -3.9 MtnX-like HAD-IB family phosphatase compare
LRK55_RS03675 -1.4 -9.3 class I SAM-dependent methyltransferase compare
LRK55_RS13495 -1.4 -6.4 glutathione S-transferase N-terminal domain-containing protein compare
LRK55_RS14820 -1.4 -7.3 polynucleotide adenylyltransferase PcnB compare
LRK55_RS17410 -1.4 -3.4 exodeoxyribonuclease VII large subunit compare
LRK55_RS16645 -1.4 -6.8 hypothetical protein compare
LRK55_RS14835 -1.4 -4.2 pantoate--beta-alanine ligase compare
LRK55_RS01695 -1.4 -2.6 class I SAM-dependent methyltransferase compare
LRK55_RS00235 -1.4 -10.7 ribonuclease R compare
LRK55_RS03680 -1.3 -8.4 glycosyltransferase family 2 protein compare
LRK55_RS09945 -1.3 -0.9 acetolactate synthase small subunit compare
LRK55_RS11925 -1.3 -3.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK55_RS16670 -1.3 -9.0 translation elongation factor 4 compare
LRK55_RS16375 -1.3 -4.7 5'/3'-nucleotidase SurE compare
LRK55_RS19385 -1.3 -1.8 hypothetical protein compare
LRK55_RS05495 -1.3 -4.1 phosphoglycerate kinase compare
LRK55_RS07505 -1.3 -1.2 MarR family transcriptional regulator compare
LRK55_RS08360 -1.3 -6.8 shikimate dehydrogenase compare
LRK55_RS10625 -1.3 -9.1 DEAD/DEAH box helicase compare
LRK55_RS08745 -1.3 -2.1 peptidoglycan DD-metalloendopeptidase family protein compare
LRK55_RS03425 -1.3 -2.1 redox-regulated ATPase YchF compare
LRK55_RS08485 -1.3 -5.3 YafY family protein compare
LRK55_RS03650 -1.2 -7.7 GDP-mannose 4,6-dehydratase compare
LRK55_RS16035 -1.2 -2.1 hypothetical protein compare
LRK55_RS08305 -1.2 -1.6 DUF484 family protein compare
LRK55_RS05395 -1.2 -6.3 hypothetical protein compare
LRK55_RS00455 -1.2 -2.1 TerC family protein compare
LRK55_RS06585 -1.2 -7.5 DNA polymerase I compare
LRK55_RS06955 -1.2 -7.6 thiol:disulfide interchange protein DsbA/DsbL compare
LRK55_RS15550 -1.2 -2.1 slipin family protein compare
LRK55_RS08810 -1.2 -11.6 TonB-dependent receptor compare
LRK55_RS17905 -1.2 -8.8 lipopolysaccharide assembly protein LapB compare
LRK55_RS14730 -1.2 -3.8 Ppx/GppA phosphatase family protein compare
LRK55_RS14805 -1.2 -4.9 hypothetical protein compare
LRK55_RS06815 -1.2 -6.5 magnesium-translocating P-type ATPase compare
LRK55_RS08515 -1.2 -2.9 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK55_RS11555 -1.2 -8.4 penicillin-binding protein 1A compare
LRK55_RS15860 -1.2 -5.6 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK55_RS02135 -1.2 -4.3 argininosuccinate lyase compare
LRK55_RS05440 -1.2 -4.6 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
LRK55_RS08905 -1.2 -6.4 transcriptional regulator PtsJ compare
LRK55_RS16890 -1.1 -2.1 copper resistance protein B compare
LRK55_RS11145 -1.1 -7.8 anthranilate synthase component I compare
LRK55_RS17750 -1.1 -5.1 RluA family pseudouridine synthase compare
LRK55_RS01050 -1.1 -2.9 3-deoxy-D-manno-octulosonic acid kinase compare
LRK55_RS14185 -1.1 -3.2 GNAT family N-acetyltransferase compare
LRK55_RS12035 -1.1 -3.7 Co2+/Mg2+ efflux protein ApaG compare


Specific Phenotypes

None in this experiment

For Rhodanobacter denitrificans MT42 in no stress control experiments