R2A_PIPES with Cadmium chloride 64 uM
Group:
stress
Media:
R2A_PIPES + Cadmium chloride (64 uM), pH=7
Culturing: Rhodanobacter_MT42_ML2, 96 well deep well block, Aerobic, at 23 (C), shaken=700 rpm
By: Hans and Hira on
1/10/25
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L
casamino acids, 0.5 g/L
Yeast Extract, 0.5 g/L
D-Glucose, 0.5 g/L
Starch, 0.3 g/L
Potassium phosphate dibasic, 0.05 g/L
Magnesium Sulfate Heptahydrate, 0.3 g/L
Sodium pyruvate, 30 mM
PIPES sesquisodium salt
Specific Phenotypes
For 13 genes in this experiment
For stress Cadmium chloride in Rhodanobacter denitrificans MT42
For stress Cadmium chloride across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|
| benzoyl-CoA biosynthesis | 3 | 3 | 2 |
| fatty acid β-oxidation I (generic) | 7 | 6 | 3 |
| adipate degradation | 5 | 5 | 2 |
| oleate β-oxidation | 35 | 32 | 14 |
| adipate biosynthesis | 5 | 4 | 2 |
| fatty acid β-oxidation IV (unsaturated, even number) | 5 | 3 | 2 |
| fatty acid β-oxidation II (plant peroxisome) | 5 | 3 | 2 |
| glutaryl-CoA degradation | 5 | 3 | 2 |
| pyruvate fermentation to hexanol (engineered) | 11 | 7 | 4 |
| (8E,10E)-dodeca-8,10-dienol biosynthesis | 11 | 5 | 4 |
| 2-methyl-branched fatty acid β-oxidation | 14 | 9 | 5 |
| fatty acid salvage | 6 | 5 | 2 |
| pyruvate fermentation to butanol II (engineered) | 6 | 4 | 2 |
| L-isoleucine degradation I | 6 | 4 | 2 |
| valproate β-oxidation | 9 | 5 | 3 |
| propanoate fermentation to 2-methylbutanoate | 6 | 3 | 2 |
| methyl ketone biosynthesis (engineered) | 6 | 3 | 2 |
| pyruvate fermentation to butanoate | 7 | 4 | 2 |
| benzoyl-CoA degradation I (aerobic) | 7 | 3 | 2 |
| fatty acid β-oxidation VI (mammalian peroxisome) | 7 | 3 | 2 |
| pyruvate fermentation to butanol I | 8 | 3 | 2 |
| L-valine degradation I | 8 | 3 | 2 |
| superpathway of Clostridium acetobutylicum acidogenic fermentation | 9 | 6 | 2 |
| phenylacetate degradation I (aerobic) | 9 | 3 | 2 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 9 | 3 | 2 |
| L-glutamate degradation V (via hydroxyglutarate) | 10 | 6 | 2 |
| (R)- and (S)-3-hydroxybutanoate biosynthesis (engineered) | 5 | 3 | 1 |
| 3-phenylpropanoate degradation | 10 | 5 | 2 |
| 4-hydroxybenzoate biosynthesis III (plants) | 5 | 2 | 1 |
| benzoate biosynthesis III (CoA-dependent, non-β-oxidative) | 5 | 1 | 1 |
| superpathway of phenylethylamine degradation | 11 | 3 | 2 |
| L-glutamate degradation VII (to butanoate) | 12 | 5 | 2 |
| 6-gingerol analog biosynthesis (engineered) | 6 | 2 | 1 |
| folate transformations I | 13 | 8 | 2 |
| superpathway of Clostridium acetobutylicum solventogenic fermentation | 13 | 4 | 2 |
| superpathway of glyoxylate cycle and fatty acid degradation | 14 | 11 | 2 |
| Spodoptera littoralis pheromone biosynthesis | 22 | 3 | 3 |
| L-tryptophan degradation III (eukaryotic) | 15 | 11 | 2 |
| glycerol degradation to butanol | 16 | 9 | 2 |
| 2-methylpropene degradation | 8 | 2 | 1 |
| crotonate fermentation (to acetate and cyclohexane carboxylate) | 16 | 3 | 2 |
| superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation | 17 | 7 | 2 |
| benzoate fermentation (to acetate and cyclohexane carboxylate) | 17 | 3 | 2 |
| folate transformations III (E. coli) | 9 | 9 | 1 |
| 3-hydroxypropanoate/4-hydroxybutanate cycle | 18 | 10 | 2 |
| toluene degradation VI (anaerobic) | 18 | 3 | 2 |
| methyl tert-butyl ether degradation | 10 | 3 | 1 |
| reductive acetyl coenzyme A pathway I (homoacetogenic bacteria) | 10 | 3 | 1 |
| folate transformations II (plants) | 11 | 10 | 1 |
| gallate degradation III (anaerobic) | 11 | 3 | 1 |
| androstenedione degradation I (aerobic) | 25 | 8 | 2 |
| platensimycin biosynthesis | 26 | 6 | 2 |
| (4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase) | 13 | 2 | 1 |
| 1-butanol autotrophic biosynthesis (engineered) | 27 | 18 | 2 |
| androstenedione degradation II (anaerobic) | 27 | 6 | 2 |
| superpathway of testosterone and androsterone degradation | 28 | 8 | 2 |
| superpathway of cholesterol degradation I (cholesterol oxidase) | 42 | 10 | 3 |
| docosahexaenoate biosynthesis III (6-desaturase, mammals) | 14 | 2 | 1 |
| superpathway of cholesterol degradation II (cholesterol dehydrogenase) | 47 | 10 | 3 |
| cholesterol degradation to androstenedione I (cholesterol oxidase) | 17 | 2 | 1 |
| cholesterol degradation to androstenedione II (cholesterol dehydrogenase) | 22 | 2 | 1 |
| superpathway of cholesterol degradation III (oxidase) | 49 | 6 | 2 |
| photosynthetic 3-hydroxybutanoate biosynthesis (engineered) | 26 | 17 | 1 |
| Methanobacterium thermoautotrophicum biosynthetic metabolism | 56 | 25 | 1 |