Experiment set1S74 for Castellaniella sp019104865 MT123

Compare to:

Anaerobic, pH5.5

200 most important genes:

  gene name fitness t score description  
ABCV34_RS13550 -4.8 -11.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABCV34_RS11240 -4.6 -12.5 imidazole glycerol phosphate synthase subunit HisH compare
ABCV34_RS11255 -4.6 -2.6 phosphoribosyl-AMP cyclohydrolase compare
ABCV34_RS11225 -4.4 -11.8 ATP phosphoribosyltransferase compare
ABCV34_RS10925 -4.4 -22.4 homoserine O-acetyltransferase compare
ABCV34_RS12430 -4.4 -21.0 RNA polymerase factor sigma-54 compare
ABCV34_RS04285 -4.4 -5.1 3-isopropylmalate dehydratase small subunit compare
ABCV34_RS01210 -4.3 -23.8 acetolactate synthase 3 catalytic subunit compare
ABCV34_RS11150 -4.3 -28.9 glutamate synthase-related protein compare
ABCV34_RS12420 -4.3 -21.8 2-isopropylmalate synthase compare
ABCV34_RS11230 -4.3 -17.0 histidinol dehydrogenase compare
ABCV34_RS11250 -4.3 -5.1 imidazole glycerol phosphate synthase subunit HisF compare
ABCV34_RS10920 -4.2 -13.0 methionine biosynthesis protein MetW compare
ABCV34_RS11245 -4.2 -7.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABCV34_RS06635 -4.1 -20.1 cystathionine gamma-synthase family protein compare
ABCV34_RS04290 -4.1 -10.0 3-isopropylmalate dehydratase large subunit compare
ABCV34_RS11155 -4.1 -11.1 glutamate synthase subunit beta compare
ABCV34_RS01220 -4.1 -14.6 ketol-acid reductoisomerase compare
ABCV34_RS05380 -4.0 -3.9 ornithine carbamoyltransferase compare
ABCV34_RS01205 -3.9 -17.7 FUSC family membrane protein compare
ABCV34_RS13815 -3.9 -16.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABCV34_RS05910 -3.9 -11.0 SirB2 family protein compare
ABCV34_RS06835 -3.9 -10.0 helix-turn-helix domain-containing protein compare
ABCV34_RS10555 -3.8 -8.9 serine hydroxymethyltransferase compare
ABCV34_RS14460 -3.8 -17.6 threonine ammonia-lyase, biosynthetic compare
ABCV34_RS13175 -3.8 -5.7 PLP-dependent aminotransferase family protein compare
ABCV34_RS06465 -3.8 -22.8 oxygen-independent coproporphyrinogen III oxidase compare
ABCV34_RS11260 -3.8 -5.1 phosphoribosyl-ATP diphosphatase compare
ABCV34_RS10825 -3.7 -14.0 phosphomethylpyrimidine synthase ThiC compare
ABCV34_RS01920 -3.6 -6.6 FTR1 family protein compare
ABCV34_RS04280 -3.6 -11.3 3-isopropylmalate dehydrogenase compare
ABCV34_RS07000 -3.5 -2.4 M48 family metallopeptidase compare
ABCV34_RS08230 -3.4 -6.8 CysB family HTH-type transcriptional regulator compare
ABCV34_RS11135 -3.3 -5.2 hypothetical protein compare
ABCV34_RS14805 -3.3 -20.8 phosphoenolpyruvate carboxylase compare
ABCV34_RS03920 -3.2 -13.2 FAD/NAD(P)-binding oxidoreductase compare
ABCV34_RS06880 -3.2 -7.8 hypothetical protein compare
ABCV34_RS09335 -3.1 -6.1 homoprotocatechuate degradation operon regulator HpaR compare
ABCV34_RS11235 -3.1 -2.2 imidazoleglycerol-phosphate dehydratase HisB compare
ABCV34_RS02670 -3.1 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
ABCV34_RS03980 -3.0 -2.1 folate-binding protein compare
ABCV34_RS01340 -3.0 -4.1 CYTH domain-containing protein compare
ABCV34_RS08805 -2.9 -5.2 HAD family hydrolase compare
ABCV34_RS02295 -2.9 -5.8 homoserine dehydrogenase compare
ABCV34_RS02645 -2.9 -3.4 histidinol-phosphate transaminase compare
ABCV34_RS10800 -2.9 -7.1 glutamate 5-kinase compare
ABCV34_RS10285 -2.8 -15.8 FMN-dependent L-lactate dehydrogenase LldD compare
ABCV34_RS00215 -2.8 -15.4 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABCV34_RS08440 -2.8 -14.0 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABCV34_RS15020 -2.8 -11.5 DUF2520 domain-containing protein compare
ABCV34_RS15245 -2.7 -11.6 gephyrin-like molybdotransferase Glp compare
ABCV34_RS09415 -2.7 -5.8 cbb3-type cytochrome c oxidase subunit I compare
ABCV34_RS15255 -2.7 -13.1 molybdenum cofactor biosynthesis protein MoaE compare
ABCV34_RS15235 -2.7 -14.0 GTP 3',8-cyclase MoaA compare
ABCV34_RS01910 -2.7 -12.9 iron transporter compare
ABCV34_RS15175 -2.7 -11.7 respiratory nitrate reductase subunit gamma compare
ABCV34_RS06815 -2.6 -3.1 FAD-linked oxidase C-terminal domain-containing protein compare
ABCV34_RS15425 -2.6 -2.0 hypothetical protein compare
ABCV34_RS04340 -2.6 -2.5 homoserine kinase compare
ABCV34_RS02955 -2.6 -9.1 YggS family pyridoxal phosphate-dependent enzyme compare
ABCV34_RS15160 -2.6 -19.2 nitrate reductase subunit alpha compare
ABCV34_RS15165 -2.6 -18.4 nitrate reductase subunit beta compare
ABCV34_RS00210 -2.6 -12.3 siroheme synthase CysG compare
ABCV34_RS06850 -2.5 -15.2 cytochrome c oxidase accessory protein CcoG compare
ABCV34_RS15240 -2.5 -13.9 molybdenum cofactor guanylyltransferase MobA compare
ABCV34_RS00220 -2.5 -10.4 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABCV34_RS14110 -2.5 -4.7 phosphoadenylyl-sulfate reductase compare
ABCV34_RS06855 -2.4 -11.3 cytochrome-c oxidase, cbb3-type subunit III compare
ABCV34_RS00545 -2.4 -4.2 molybdopterin adenylyltransferase compare
ABCV34_RS06870 -2.4 -17.6 cytochrome-c oxidase, cbb3-type subunit I compare
ABCV34_RS06865 -2.4 -9.0 cytochrome-c oxidase, cbb3-type subunit II compare
ABCV34_RS07935 -2.4 -6.5 zinc-finger domain-containing protein compare
ABCV34_RS14115 -2.4 -10.0 sulfate adenylyltransferase subunit CysD compare
ABCV34_RS15170 -2.3 -12.0 nitrate reductase molybdenum cofactor assembly chaperone compare
ABCV34_RS09235 -2.3 -4.0 50S ribosomal protein L25/general stress protein Ctc compare
ABCV34_RS02400 -2.3 -3.5 oxidative damage protection protein compare
ABCV34_RS09405 -2.3 -2.4 c-type cytochrome compare
ABCV34_RS03610 -2.3 -6.1 pyrroline-5-carboxylate reductase compare
ABCV34_RS12390 -2.3 -6.2 thiol:disulfide interchange protein DsbA/DsbL compare
ABCV34_RS00875 -2.3 -12.8 class I SAM-dependent methyltransferase compare
ABCV34_RS15265 -2.3 -10.0 cyclic pyranopterin monophosphate synthase MoaC compare
ABCV34_RS11885 -2.2 -1.5 membrane protein insertion efficiency factor YidD compare
ABCV34_RS14795 -2.2 -5.1 FadR/GntR family transcriptional regulator compare
ABCV34_RS15155 -2.2 -9.7 NarK family nitrate/nitrite MFS transporter compare
ABCV34_RS00925 -2.2 -2.0 NAD(P)-dependent oxidoreductase compare
ABCV34_RS14565 -2.2 -10.3 helix-turn-helix transcriptional regulator compare
ABCV34_RS05690 -2.1 -3.1 flagellar biosynthetic protein FliO compare
ABCV34_RS05120 -2.0 -2.5 transcriptional repressor LexA compare
ABCV34_RS06820 -2.0 -4.3 FAD-linked oxidase C-terminal domain-containing protein compare
ABCV34_RS14120 -2.0 -9.1 GTP-binding protein compare
ABCV34_RS06805 -2.0 -1.3 glycolate oxidase subunit GlcF compare
ABCV34_RS12650 -2.0 -9.7 trypsin-like peptidase domain-containing protein compare
ABCV34_RS13685 -2.0 -6.2 maleylacetoacetate isomerase compare
ABCV34_RS13735 -2.0 -10.4 phenylacetic acid degradation operon negative regulatory protein PaaX compare
ABCV34_RS10300 -1.9 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABCV34_RS01915 -1.9 -5.8 cupredoxin domain-containing protein compare
ABCV34_RS08235 -1.9 -6.7 UbiA family prenyltransferase compare
ABCV34_RS04795 -1.9 -5.9 glutathione synthase compare
ABCV34_RS06810 -1.9 -2.5 glycolate oxidase subunit GlcE compare
ABCV34_RS09420 -1.9 -7.8 OsmC family protein compare
ABCV34_RS11500 -1.9 -6.5 IclR family transcriptional regulator compare
ABCV34_RS13130 -1.9 -6.0 hypothetical protein compare
ABCV34_RS02850 -1.8 -2.7 ABC transporter ATP-binding protein compare
ABCV34_RS09400 -1.8 -2.7 SCO family protein compare
ABCV34_RS10280 -1.8 -10.7 anthranilate synthase component I compare
ABCV34_RS14560 -1.8 -13.6 methionine synthase compare
ABCV34_RS02290 -1.8 -10.5 alanine transaminase compare
ABCV34_RS04120 -1.8 -11.7 [protein-PII] uridylyltransferase compare
ABCV34_RS09395 -1.7 -8.5 hypothetical protein compare
ABCV34_RS15195 -1.7 -8.0 NnrS family protein compare
ABCV34_RS10625 -1.7 -12.1 GNAT family N-acetyltransferase compare
ABCV34_RS08005 -1.7 -5.8 cytochrome ubiquinol oxidase subunit I compare
ABCV34_RS04330 -1.7 -10.9 CBS domain-containing protein compare
ABCV34_RS15150 -1.7 -1.1 phosphoglycerate dehydrogenase compare
ABCV34_RS05130 -1.6 -1.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABCV34_RS00695 -1.6 -4.6 helix-turn-helix domain-containing protein compare
ABCV34_RS08355 -1.6 -3.7 RNA polymerase sigma factor RpoE compare
ABCV34_RS12740 -1.6 -2.6 hypothetical protein compare
ABCV34_RS09410 -1.6 -5.1 cbb3-type cytochrome c oxidase subunit II compare
ABCV34_RS08985 -1.6 -10.6 SulP family inorganic anion transporter compare
ABCV34_RS04200 -1.6 -6.6 heavy metal translocating P-type ATPase compare
ABCV34_RS02175 -1.6 -8.9 histidine ABC transporter permease HisM compare
ABCV34_RS10685 -1.5 -2.0 TlpA disulfide reductase family protein compare
ABCV34_RS07980 -1.5 -1.5 Holliday junction branch migration protein RuvA compare
ABCV34_RS15250 -1.5 -3.8 molybdenum cofactor biosynthesis protein B compare
ABCV34_RS02845 -1.5 -2.5 ABC transporter ATP-binding protein compare
ABCV34_RS03535 -1.5 -3.9 nitrogen regulation protein NR(II) compare
ABCV34_RS15580 -1.5 -8.2 polyphosphate kinase 1 compare
ABCV34_RS02835 -1.4 -7.1 branched-chain amino acid ABC transporter permease compare
ABCV34_RS12285 -1.4 -7.2 LacI family DNA-binding transcriptional regulator compare
ABCV34_RS10740 -1.4 -2.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
ABCV34_RS00640 -1.4 -2.1 MaoC family dehydratase compare
ABCV34_RS10805 -1.4 -6.1 winged helix-turn-helix transcriptional regulator compare
ABCV34_RS06860 -1.4 -1.4 CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone compare
ABCV34_RS04600 -1.4 -1.6 DUF2971 domain-containing protein compare
ABCV34_RS07475 -1.4 -6.9 ferric iron uptake transcriptional regulator compare
ABCV34_RS01925 -1.4 -5.6 4Fe-4S binding protein compare
ABCV34_RS10670 -1.4 -3.6 50S ribosomal protein L11 methyltransferase compare
ABCV34_RS14340 -1.4 -1.1 PTS sugar transporter subunit IIA compare
ABCV34_RS14580 -1.4 -3.3 ScpA family protein compare
ABCV34_RS09510 -1.4 -2.4 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABCV34_RS03915 -1.4 -2.1 acylphosphatase compare
ABCV34_RS04515 -1.3 -3.4 hypothetical protein compare
ABCV34_RS13800 -1.3 -11.2 aconitate hydratase AcnA compare
ABCV34_RS15405 -1.3 -4.7 lytic transglycosylase domain-containing protein compare
ABCV34_RS05895 -1.3 -10.7 nitric-oxide reductase large subunit compare
ABCV34_RS08255 -1.3 -9.0 sugar phosphate isomerase/epimerase family protein compare
ABCV34_RS14345 -1.3 -6.9 ribosome-associated translation inhibitor RaiA compare
ABCV34_RS10720 -1.3 -4.3 lysophospholipid acyltransferase family protein compare
ABCV34_RS13455 -1.3 -3.2 tyrosine recombinase XerC compare
ABCV34_RS11870 -1.2 -0.7 chromosomal replication initiator protein DnaA compare
ABCV34_RS04185 -1.2 -4.9 SCO family protein compare
ABCV34_RS04125 -1.2 -4.0 disulfide bond formation protein B compare
ABCV34_RS10660 -1.2 -6.0 carbohydrate kinase family protein compare
ABCV34_RS02960 -1.2 -5.2 exodeoxyribonuclease V subunit gamma compare
ABCV34_RS09215 -1.2 -1.1 redox-regulated ATPase YchF compare
ABCV34_RS01805 -1.2 -0.6 PepSY domain-containing protein compare
ABCV34_RS06675 -1.2 -1.3 DUF3293 domain-containing protein compare
ABCV34_RS06600 -1.2 -2.2 hypothetical protein compare
ABCV34_RS03590 -1.2 -3.4 sn-glycerol-3-phosphate import ATP-binding protein UgpC compare
ABCV34_RS14810 -1.2 -9.0 dihydroxy-acid dehydratase compare
ABCV34_RS14485 -1.2 -0.8 SCP2 sterol-binding domain-containing protein compare
ABCV34_RS03725 -1.2 -6.9 ABC transporter substrate-binding protein compare
ABCV34_RS11390 -1.2 -2.1 TetR/AcrR family transcriptional regulator compare
ABCV34_RS13445 -1.2 -3.4 metal ABC transporter permease compare
ABCV34_RS15820 -1.2 -3.2 site-2 protease family protein compare
ABCV34_RS02220 -1.2 -7.5 aromatic ring-hydroxylating dioxygenase subunit alpha compare
ABCV34_RS05750 -1.2 -3.0 flagellar basal-body rod protein FlgF compare
ABCV34_RS07135 -1.2 -3.3 HAD-IA family hydrolase compare
ABCV34_RS10490 -1.2 -2.5 transglycosylase SLT domain-containing protein compare
ABCV34_RS02965 -1.2 -5.0 exodeoxyribonuclease V subunit beta compare
ABCV34_RS10295 -1.2 -6.9 L-lactate permease compare
ABCV34_RS02840 -1.2 -5.9 branched-chain amino acid ABC transporter permease compare
ABCV34_RS07245 -1.1 -0.9 SMR family transporter compare
ABCV34_RS08755 -1.1 -1.7 CopG family antitoxin compare
ABCV34_RS01335 -1.1 -4.4 AAA family ATPase compare
ABCV34_RS05970 -1.1 -1.7 hypothetical protein compare
ABCV34_RS00515 -1.1 -3.1 site-specific tyrosine recombinase XerD compare
ABCV34_RS00390 -1.1 -1.1 DNA-3-methyladenine glycosylase 2 family protein compare
ABCV34_RS12825 -1.1 -5.1 histidine utilization repressor compare
ABCV34_RS00160 -1.1 -1.9 TrbC/VirB2 family protein compare
ABCV34_RS02170 -1.1 -2.4 ATP-binding cassette domain-containing protein compare
ABCV34_RS06795 -1.1 -4.0 glutathione S-transferase compare
ABCV34_RS08075 -1.1 -8.3 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABCV34_RS05660 -1.1 -4.6 flagellar protein export ATPase FliI compare
ABCV34_RS09870 -1.1 -2.1 copper chaperone PCu(A)C compare
ABCV34_RS00830 -1.1 -2.7 hypothetical protein compare
ABCV34_RS06905 -1.1 -2.1 MarR family transcriptional regulator compare
ABCV34_RS05560 -1.1 -3.4 MarR family transcriptional regulator compare
ABCV34_RS07155 -1.1 -2.6 RNA polymerase sigma factor compare
ABCV34_RS12615 -1.1 -2.7 ClpXP protease specificity-enhancing factor compare
ABCV34_RS10815 -1.1 -0.5 hypothetical protein compare
ABCV34_RS12035 -1.1 -5.5 FadR/GntR family transcriptional regulator compare
ABCV34_RS05740 -1.1 -3.2 flagellar basal body L-ring protein FlgH compare
ABCV34_RS14330 -1.1 -0.7 RNase adapter RapZ compare
ABCV34_RS10810 -1.1 -6.7 D-amino acid dehydrogenase compare
ABCV34_RS10305 -1.0 -1.0 anthranilate phosphoribosyltransferase compare
ABCV34_RS01640 -1.0 -1.9 DUF2863 family protein compare
ABCV34_RS10765 -1.0 -6.7 carbon starvation CstA family protein compare
ABCV34_RS08250 -1.0 -5.1 S-ribosylhomocysteine lyase compare


Specific Phenotypes

For 32 genes in this experiment