Experiment set1S73 for Enterobacter sp. TBS_079

Compare to:

mutant library grown in Supernatant; Variovorax sp. TBS_050B grown in R2A

200 most important genes:

  gene name fitness t score description  
MPMX20_01950 -6.1 -4.2 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_04768 -5.4 -14.5 hypothetical protein compare
MPMX20_01355 -4.5 -1.7 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_03154 -4.3 -10.1 Inner membrane protein YejM compare
MPMX20_04440 -3.3 -2.2 Transcription antitermination protein RfaH compare
MPMX20_01607 -3.1 -5.1 Outer membrane protein A compare
MPMX20_01367 -3.0 -6.3 Tol-Pal system protein TolR compare
MPMX20_01368 -3.0 -4.8 hypothetical protein compare
MPMX20_04595 -2.9 -2.0 Glutamine synthetase compare
MPMX20_03010 -2.8 -5.7 UDP-glucose 4-epimerase compare
MPMX20_01370 -2.8 -4.6 Peptidoglycan-associated lipoprotein compare
MPMX20_03153 -2.7 -3.4 hypothetical protein compare
MPMX20_00807 -2.5 -5.3 Pyruvate dehydrogenase E1 component compare
MPMX20_04278 -2.5 -6.3 3-dehydroquinate synthase compare
MPMX20_03006 -2.3 -7.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_04530 -2.3 -9.6 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_01028 -2.3 -2.2 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_03018 -2.2 -5.8 hypothetical protein compare
MPMX20_04442 -2.2 -6.0 Sec-independent protein translocase protein TatC compare
MPMX20_03683 -2.2 -3.0 RecBCD enzyme subunit RecB compare
MPMX20_04483 -2.2 -3.0 Lipid III flippase compare
MPMX20_01366 -2.0 -3.7 Tol-Pal system protein TolQ compare
MPMX20_01616 -2.0 -1.7 Heat shock protein HspQ compare
MPMX20_03685 -1.9 -4.8 RecBCD enzyme subunit RecC compare
MPMX20_03007 -1.9 -6.7 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_03264 -1.9 -5.1 Chorismate synthase compare
MPMX20_03002 -1.8 -9.9 Histidinol dehydrogenase compare
MPMX20_01369 -1.8 -6.8 Tol-Pal system protein TolB compare
MPMX20_03004 -1.8 -8.2 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_01552 -1.8 -5.6 hypothetical protein compare
MPMX20_02896 -1.7 -10.6 Lysozyme RrrD compare
MPMX20_03019 -1.7 -11.1 hypothetical protein compare
MPMX20_00110 -1.7 -11.4 hypothetical protein compare
MPMX20_02885 -1.7 -7.3 hypothetical protein compare
MPMX20_04444 -1.6 -1.4 Sec-independent protein translocase protein TatA compare
MPMX20_03021 -1.6 -7.1 hypothetical protein compare
MPMX20_00712 -1.6 -8.0 Threonine synthase compare
MPMX20_00453 -1.6 -2.6 RNA-binding protein Hfq compare
MPMX20_00106 -1.6 -5.3 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_00109 -1.5 -11.3 hypothetical protein compare
MPMX20_04427 -1.5 -1.5 5S ribosomal RNA compare
MPMX20_02826 -1.5 -2.4 Cold shock-like protein CspB compare
MPMX20_03753 -1.5 -6.5 Tyrosine recombinase XerD compare
MPMX20_04162 -1.5 -4.0 3-dehydroquinate dehydratase compare
MPMX20_04489 -1.5 -10.5 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_03001 -1.5 -8.2 ATP phosphoribosyltransferase compare
MPMX20_03310 -1.4 -3.6 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_02895 -1.4 -9.0 hypothetical protein compare
MPMX20_03008 -1.4 -5.9 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_03022 -1.4 -2.5 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_04531 -1.4 -8.0 Cystathionine gamma-synthase compare
MPMX20_02488 -1.4 -9.3 Cyclic di-GMP phosphodiesterase PdeR compare
MPMX20_03003 -1.4 -7.8 Histidinol-phosphate aminotransferase compare
MPMX20_03409 -1.4 -2.6 Iron-binding protein IscA compare
MPMX20_01029 -1.4 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_02892 -1.4 -10.6 hypothetical protein compare
MPMX20_00230 -1.3 -4.7 Homoserine O-succinyltransferase compare
MPMX20_00102 -1.3 -2.4 hypothetical protein compare
MPMX20_04119 -1.3 -1.4 DNA polymerase III subunit chi compare
MPMX20_04275 -1.3 -1.8 Ribulose-phosphate 3-epimerase compare
MPMX20_02887 -1.3 -5.1 hypothetical protein compare
MPMX20_04465 -1.3 -3.8 Tyrosine recombinase XerC compare
MPMX20_02886 -1.2 -8.0 hypothetical protein compare
MPMX20_03005 -1.2 -5.1 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_00105 -1.2 -7.7 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_02766 -1.2 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_01567 -1.2 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_04469 -1.2 -2.5 Adenylate cyclase compare
MPMX20_04692 -1.1 -1.4 hypothetical protein compare
MPMX20_03488 -1.1 -3.3 Persistence and stress-resistance antitoxin PasI compare
MPMX20_02890 -1.1 -7.2 hypothetical protein compare
MPMX20_00693 -1.1 -4.9 Phosphoserine phosphatase compare
MPMX20_03468 -1.1 -4.9 T-protein compare
MPMX20_00570 -1.1 -7.9 putative BsuMI modification methylase subunit YdiO compare
MPMX20_04466 -1.1 -3.2 hypothetical protein compare
MPMX20_02884 -1.1 -8.9 hypothetical protein compare
MPMX20_00537 -1.1 -5.9 Trehalose-6-phosphate hydrolase compare
MPMX20_01566 -1.1 -6.0 Phosphoserine aminotransferase compare
MPMX20_02591 -1.1 -3.4 DNA-binding protein H-NS compare
MPMX20_02767 -1.1 -2.5 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_03267 -1.1 -2.7 Phosphohistidine phosphatase SixA compare
MPMX20_00108 -1.1 -7.9 hypothetical protein compare
MPMX20_03408 -1.0 -1.7 Co-chaperone protein HscB compare
MPMX20_02901 -1.0 -6.3 hypothetical protein compare
MPMX20_03479 -1.0 -2.0 30S ribosomal protein S16 compare
MPMX20_04642 -1.0 -1.4 Phosphate import ATP-binding protein PstB compare
MPMX20_02872 -1.0 -4.3 hypothetical protein compare
MPMX20_04079 -1.0 -2.1 Protein-export membrane protein SecG compare
MPMX20_04670 -1.0 -1.4 hypothetical protein compare
MPMX20_02898 -1.0 -5.7 hypothetical protein compare
MPMX20_03020 -1.0 -4.5 hypothetical protein compare
MPMX20_02770 -1.0 -3.1 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_02203 -1.0 -2.2 hypothetical protein compare
MPMX20_00831 -1.0 -3.3 RNA polymerase-binding transcription factor DksA compare
MPMX20_02514 -1.0 -4.7 Tryptophan synthase alpha chain compare
MPMX20_02696 -1.0 -4.9 Murein tetrapeptide carboxypeptidase compare
MPMX20_02883 -1.0 -5.2 hypothetical protein compare
MPMX20_03443 -1.0 -3.7 Anti-sigma-E factor RseA compare
MPMX20_02757 -1.0 -2.0 Glucose-6-phosphate 1-dehydrogenase compare
MPMX20_04443 -1.0 -1.0 Sec-independent protein translocase protein TatB compare
MPMX20_02928 -1.0 -1.3 hypothetical protein compare
MPMX20_00766 -0.9 -4.6 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_02476 -0.9 -2.1 Putrescine export system permease protein SapC compare
MPMX20_01334 -0.9 -4.3 Phosphoglucomutase compare
MPMX20_03945 -0.9 -3.2 hypothetical protein compare
MPMX20_04650 -0.9 -2.2 tRNA modification GTPase MnmE compare
MPMX20_02510 -0.9 -6.4 Anthranilate synthase component 1 compare
MPMX20_04641 -0.9 -2.1 Phosphate transport system permease protein PstA compare
MPMX20_02511 -0.9 -5.5 Bifunctional protein TrpGD compare
MPMX20_03338 -0.9 -3.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_02864 -0.9 -1.9 hypothetical protein compare
MPMX20_02513 -0.9 -5.4 Tryptophan synthase beta chain compare
MPMX20_02891 -0.9 -6.6 hypothetical protein compare
MPMX20_00711 -0.9 -5.5 Homoserine kinase compare
MPMX20_00767 -0.9 -5.7 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_00768 -0.9 -5.9 3-isopropylmalate dehydrogenase compare
MPMX20_02512 -0.9 -5.2 Tryptophan biosynthesis protein TrpCF compare
MPMX20_03385 -0.9 -3.0 hypothetical protein compare
MPMX20_04375 -0.9 -3.4 putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
MPMX20_02868 -0.9 -4.9 Protein UmuD compare
MPMX20_03466 -0.9 -4.7 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_04111 -0.9 -3.2 RNase adapter protein RapZ compare
MPMX20_03407 -0.9 -2.0 Chaperone protein HscA compare
MPMX20_03017 -0.9 -5.4 hypothetical protein compare
MPMX20_04276 -0.9 -3.1 DNA adenine methylase compare
MPMX20_04452 -0.9 -4.7 HTH-type transcriptional regulator MetR compare
MPMX20_02879 -0.9 -2.5 hypothetical protein compare
MPMX20_04189 -0.8 -2.8 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_00480 -0.8 -1.8 50S ribosomal protein L9 compare
MPMX20_02922 -0.8 -5.3 hypothetical protein compare
MPMX20_02546 -0.8 -2.0 hypothetical protein compare
MPMX20_04640 -0.8 -1.6 Phosphate transport system permease protein PstC compare
MPMX20_02920 -0.8 -4.2 hypothetical protein compare
MPMX20_04731 -0.8 -3.1 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_03090 -0.8 -1.4 Methionine--tRNA ligase compare
MPMX20_03771 -0.8 -4.7 D-3-phosphoglycerate dehydrogenase compare
MPMX20_02863 -0.8 -5.9 hypothetical protein compare
MPMX20_02882 -0.8 -3.1 hypothetical protein compare
MPMX20_01181 -0.8 -2.1 Putative transferase YhbX compare
MPMX20_02889 -0.8 -5.5 hypothetical protein compare
MPMX20_02861 -0.8 -4.9 hypothetical protein compare
MPMX20_04243 -0.8 -1.1 hypothetical protein compare
MPMX20_02869 -0.8 -6.1 hypothetical protein compare
MPMX20_01784 -0.8 -2.3 Purine nucleoside phosphoramidase compare
MPMX20_04298 -0.8 -2.1 hypothetical protein compare
MPMX20_02668 -0.8 -1.3 hypothetical protein compare
MPMX20_04297 -0.7 -1.9 putative [Fe-S]-dependent transcriptional repressor FeoC compare
MPMX20_02749 -0.7 -3.6 DNA polymerase III subunit theta compare
MPMX20_04110 -0.7 -2.6 Nitrogen regulatory protein compare
MPMX20_02905 -0.7 -4.4 hypothetical protein compare
MPMX20_02919 -0.7 -3.3 hypothetical protein compare
MPMX20_03447 -0.7 -3.2 ATP-dependent RNA helicase SrmB compare
MPMX20_03260 -0.7 -1.6 hypothetical protein compare
MPMX20_00812 -0.7 -2.9 Aconitate hydratase B compare
MPMX20_04463 -0.7 -2.9 DNA helicase II compare
MPMX20_04462 -0.7 -3.0 Magnesium transport protein CorA compare
MPMX20_04393 -0.7 -2.5 Low-affinity inorganic phosphate transporter 1 compare
MPMX20_02880 -0.7 -4.9 hypothetical protein compare
MPMX20_03636 -0.7 -2.6 Adenylyl-sulfate kinase compare
MPMX20_02867 -0.7 -3.5 hypothetical protein compare
MPMX20_02908 -0.7 -2.4 hypothetical protein compare
MPMX20_01549 -0.7 -1.7 ATP-binding/permease protein CydD compare
MPMX20_00388 -0.7 -0.7 hypothetical protein compare
MPMX20_00998 -0.7 -2.0 Sec translocon accessory complex subunit YajC compare
MPMX20_00133 -0.7 -2.6 Mannitol operon repressor compare
MPMX20_03309 -0.7 -1.0 Phosphocarrier protein HPr compare
MPMX20_00769 -0.7 -5.0 2-isopropylmalate synthase compare
MPMX20_00710 -0.7 -5.1 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_03756 -0.7 -2.9 FAD assembly factor SdhE compare
MPMX20_00749 -0.7 -2.5 Chaperone SurA compare
MPMX20_02866 -0.7 -4.7 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase compare
MPMX20_02907 -0.7 -3.1 hypothetical protein compare
MPMX20_04197 -0.7 -2.5 Trk system potassium uptake protein TrkA compare
MPMX20_04505 -0.7 -3.5 HTH-type transcriptional regulator HdfR compare
MPMX20_01071 -0.7 -2.9 Adenine phosphoribosyltransferase compare
MPMX20_02925 -0.6 -5.2 hypothetical protein compare
MPMX20_02862 -0.6 -4.2 hypothetical protein compare
MPMX20_02860 -0.6 -3.9 hypothetical protein compare
MPMX20_04105 -0.6 -1.8 Lipopolysaccharide export system protein LptC compare
MPMX20_04730 -0.6 -2.4 hypothetical protein compare
MPMX20_02902 -0.6 -3.4 Serine/threonine-protein phosphatase 1 compare
MPMX20_03016 -0.6 -5.4 Mannose-1-phosphate guanylyltransferase RfbM compare
MPMX20_04558 -0.6 -1.9 Protein YiiM compare
MPMX20_02909 -0.6 -3.2 hypothetical protein compare
MPMX20_00210 -0.6 -2.1 PTS system cellobiose-specific EIIB component compare
MPMX20_02930 -0.6 -3.2 hypothetical protein compare
MPMX20_01353 -0.6 -3.5 Succinate dehydrogenase iron-sulfur subunit compare
MPMX20_03290 -0.6 -1.3 tRNA-Ala compare
MPMX20_03248 -0.6 -2.1 Colicin V production protein compare
MPMX20_00826 -0.6 -2.3 Pantothenate synthetase compare
MPMX20_02025 -0.6 -2.3 hypothetical protein compare
MPMX20_02358 -0.6 -3.5 putative D,D-dipeptide transport system permease protein DdpC compare
MPMX20_04141 -0.6 -2.6 Arginine repressor compare
MPMX20_04340 -0.6 -2.8 Cell division ATP-binding protein FtsE compare
MPMX20_01704 -0.6 -1.6 hypothetical protein compare
MPMX20_02923 -0.6 -3.9 hypothetical protein compare
MPMX20_00745 -0.6 -1.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_02897 -0.6 -2.8 hypothetical protein compare
MPMX20_04346 -0.6 -4.0 Zinc/cadmium/lead-transporting P-type ATPase compare
MPMX20_00829 -0.6 -3.0 Poly(A) polymerase I compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Variovorax sp. TBS_050B grown in R2A in Enterobacter sp. TBS_079

For supernatant Supernatant; Variovorax sp. TBS_050B grown in R2A across organisms