Experiment set1S62 for Enterobacter sp. TBS_079

mutant library grown in Supernatant; Inquilinus sp. 005-A5 grown in LB

Group: supernatant
Media: + supernatant from Inquilinus sp. 005-A5 grown in LB (1 x)
Culturing: Enterobacter_TBS_079_ML3, tube, Aerobic, at 30 (C), shaken=200 rpm
By: Robin on

Specific Phenotypes

For 8 genes in this experiment

For supernatant Supernatant; Inquilinus sp. 005-A5 grown in LB in Enterobacter sp. TBS_079

For supernatant Supernatant; Inquilinus sp. 005-A5 grown in LB across organisms

SEED Subsystems

Subsystem	#Specific
Maltose and Maltodextrin Utilization	2
Trehalose Uptake and Utilization	2
Alanine biosynthesis	1
Carboxysome	1
Respiratory dehydrogenases 1	1
Staphylococcal phi-Mu50B-like prophages	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Glycolysis / Gluconeogenesis
• Fructose and mannose metabolism
• Galactose metabolism
• Ascorbate and aldarate metabolism
• Oxidative phosphorylation
• Selenoamino acid metabolism
• Starch and sucrose metabolism
• Nucleotide sugars metabolism
• Aminosugars metabolism
• Thiamine metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-alanine biosynthesis III	1	1	1
L-cysteine degradation IV	1	1	1
nitrate reduction VIIIb (dissimilatory)	2	2	1
NADH to nitrate electron transfer	2	2	1
NADH to cytochrome bd oxidase electron transfer II	2	2	1
NADH to cytochrome bd oxidase electron transfer I	2	2	1
cytidylyl molybdenum cofactor sulfurylation	2	1	1
NADH to cytochrome bo oxidase electron transfer I	2	1	1
NADH to cytochrome bo oxidase electron transfer II	2	1	1
NADH to cytochrome aa3 oxidase electron transfer	2	1	1
aerobic respiration III (alternative oxidase pathway)	3	3	1
bis(guanylyl molybdopterin) cofactor sulfurylation	3	1	1
thiazole component of thiamine diphosphate biosynthesis II	7	5	2
superpathway of L-alanine biosynthesis	4	4	1
aerobic respiration II (cytochrome c) (yeast)	4	2	1
aerobic respiration I (cytochrome c)	4	2	1
tRNA-uridine 2-thiolation (yeast mitochondria)	4	1	1
tRNA-uridine 2-thiolation (mammalian mitochondria)	4	1	1
mitochondrial NADPH production (yeast)	5	3	1
[2Fe-2S] iron-sulfur cluster biosynthesis	10	4	2
tRNA-uridine 2-thiolation (thermophilic bacteria)	5	1	1
superpathway of thiamine diphosphate biosynthesis II	11	9	2
thiazole component of thiamine diphosphate biosynthesis I	6	6	1
molybdopterin biosynthesis	6	6	1
NAD(P)/NADPH interconversion	6	4	1
Fe(II) oxidation	6	1	1
superpathway of NAD/NADP - NADH/NADPH interconversion (yeast)	8	6	1
tRNA-uridine 2-thiolation (cytoplasmic)	8	1	1
superpathway of thiamine diphosphate biosynthesis I	10	10	1
tRNA-uridine 2-thiolation and selenation (bacteria)	11	7	1