Experiment set1S553 for Escherichia coli Nissle 1917

Compare to:

Bas63

200 most important genes:

  gene name fitness t score description  
ECOLIN_RS22250 -4.4 -5.2 thiol:disulfide interchange protein DsbA compare
ECOLIN_RS15840 -4.4 -3.0 exodeoxyribonuclease V subunit gamma compare
ECOLIN_RS07485 -4.0 -5.2 histone-like nucleoid-structuring protein H-NS compare
ECOLIN_RS03435 -3.3 -3.9 lipoyl(octanoyl) transferase LipB compare
ECOLIN_RS00645 -3.0 -4.6 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
ECOLIN_RS26335 -2.8 -8.8 membrane protein compare
ECOLIN_RS20790 -2.8 -2.0 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
ECOLIN_RS16185 -2.7 -2.6 2-octaprenyl-6-methoxyphenyl hydroxylase compare
ECOLIN_RS16105 -2.6 -3.1 lysine--tRNA ligase compare
ECOLIN_RS13330 -2.6 -3.0 acetate kinase compare
ECOLIN_RS16180 -2.5 -2.9 FAD-dependent 2-octaprenylphenol hydroxylase compare
ECOLIN_RS14790 -2.5 -3.7 type II toxin-antitoxin system toxin RatA compare
ECOLIN_RS03945 -2.3 -3.5 peptidoglycan-associated lipoprotein Pal compare
ECOLIN_RS06270 -2.3 -2.7 ribonuclease E compare
ECOLIN_RS03940 -2.3 -4.5 Tol-Pal system beta propeller repeat protein TolB compare
ECOLIN_RS22150 -2.2 -5.8 transcription/translation regulatory transformer protein RfaH compare
ECOLIN_RS21690 -2.1 -3.5 DNA helicase Rep compare
ECOLIN_RS04155 -2.1 -2.3 uridine diphosphate-N-acetylglucosamine-binding protein YvcK compare
ECOLIN_RS14340 -2.1 -3.4 ISC system 2Fe-2S type ferredoxin compare
ECOLIN_RS03695 -2.0 -3.2 ferric iron uptake transcriptional regulator compare
ECOLIN_RS21345 -2.0 -3.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ECOLIN_RS00640 -2.0 -6.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ECOLIN_RS14555 -1.9 -3.2 anti-sigma-E factor RseA compare
ECOLIN_RS04415 -1.9 -2.5 glutathione ABC transporter substrate-binding protein GsiB compare
ECOLIN_RS22640 -1.9 -1.9 ATP-dependent protease subunit HslV compare
ECOLIN_RS19995 -1.9 -3.6 glutathione-disulfide reductase compare
ECOLIN_RS21335 -1.8 -1.5 membrane protein insertion efficiency factor YidD compare
ECOLIN_RS07165 -1.8 -2.0 disulfide bond formation protein DsbB compare
ECOLIN_RS13885 -1.8 -2.7 PTS glucose transporter subunit IIA compare
ECOLIN_RS21515 -1.8 -6.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ECOLIN_RS20620 -1.8 -2.6 murein hydrolase activator EnvC compare
ECOLIN_RS19350 -1.8 -3.0 adenine-specific DNA-methyltransferase compare
ECOLIN_RS03560 -1.8 -4.1 3-demethoxyubiquinol 3-hydroxylase compare
ECOLIN_RS14275 -1.7 -4.4 outer membrane protein assembly factor BamB compare
ECOLIN_RS16330 -1.7 -3.9 transketolase compare
ECOLIN_RS16610 -1.7 -1.6 DUF417 family protein compare
ECOLIN_RS13335 -1.6 -2.1 phosphate acetyltransferase compare
ECOLIN_RS18520 -1.6 -2.6 stringent starvation protein SspA compare
ECOLIN_RS05495 -1.6 -1.5 hypothetical protein compare
ECOLIN_RS24565 -1.5 -3.0 ribosome biogenesis factor YjgA compare
ECOLIN_RS03055 -1.5 -1.9 metal-dependent hydrolase compare
ECOLIN_RS02375 -1.5 -1.7 pyrimidine/purine nucleoside phosphorylase compare
ECOLIN_RS07635 -1.5 -1.4 23S rRNA pseudouridine(2605) synthase RluB compare
ECOLIN_RS00525 -1.5 -1.7 8-oxo-dGTP diphosphatase MutT compare
ECOLIN_RS13595 -1.5 -1.4 LuxR C-terminal-related transcriptional regulator compare
ECOLIN_RS21440 -1.5 -2.5 phosphate ABC transporter permease PstA compare
ECOLIN_RS02160 -1.5 -1.4 2-methylcitrate dehydratase compare
ECOLIN_RS03935 -1.4 -2.3 cell envelope integrity protein TolA compare
ECOLIN_RS06390 -1.4 -1.7 beta-N-acetylhexosaminidase compare
ECOLIN_RS03785 -1.4 -1.9 YbgA family protein compare
ECOLIN_RS22295 -1.4 -3.7 nitrogen regulation protein NR(I) compare
ECOLIN_RS17530 -1.3 -1.8 glutathionylspermidine synthase family protein compare
ECOLIN_RS07680 -1.3 -1.8 HTH-type transcriptional regulator CysB compare
ECOLIN_RS24390 -1.3 -1.9 50S ribosomal protein L9 compare
ECOLIN_RS21905 -1.3 -5.0 magnesium/cobalt transporter CorA compare
ECOLIN_RS05340 -1.2 -1.4 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA compare
ECOLIN_RS10505 -1.2 -1.7 phage portal protein compare
ECOLIN_RS17300 -1.2 -2.3 TonB system transport protein ExbD compare
ECOLIN_RS09525 -1.2 -1.5 3-deoxy-7-phosphoheptulonate synthase AroH compare
ECOLIN_RS13345 -1.2 -1.8 NUDIX hydrolase YfcD compare
ECOLIN_RS08295 -1.2 -1.7 PLP-dependent aminotransferase family protein compare
ECOLIN_RS25135 -1.2 -1.1 YjjW family glycine radical enzyme activase compare
ECOLIN_RS18465 -1.2 -3.1 aerobic respiration two-component sensor histidine kinase ArcB compare
ECOLIN_RS06290 -1.2 -2.5 23S rRNA accumulation protein YceD compare
ECOLIN_RS11140 -1.2 -1.4 drug/metabolite exporter YedA compare
ECOLIN_RS14350 -1.1 -1.9 co-chaperone HscB compare
ECOLIN_RS21445 -1.1 -2.6 phosphate ABC transporter permease PstC compare
ECOLIN_RS13435 -1.1 -2.3 tRNA pseudouridine(38-40) synthase TruA compare
ECOLIN_RS14345 -1.1 -3.2 Fe-S protein assembly chaperone HscA compare
ECOLIN_RS14355 -1.1 -2.6 iron-sulfur cluster assembly protein IscA compare
ECOLIN_RS19555 -1.1 -4.6 glycerol-3-phosphate dehydrogenase compare
ECOLIN_RS23165 -1.1 -2.0 hypothetical protein compare
ECOLIN_RS22315 -1.1 -6.5 ribosome-dependent GTPase TypA compare
ECOLIN_RS31275 -1.1 -1.8 hypothetical protein compare
ECOLIN_RS16075 -1.1 -1.1 4Fe-4S dicluster domain-containing protein compare
ECOLIN_RS02985 -1.0 -1.1 glycerate 3-kinase compare
ECOLIN_RS03025 -1.0 -1.4 5-(carboxyamino)imidazole ribonucleotide synthase compare
ECOLIN_RS18680 -1.0 -1.0 ABC transporter permease compare
ECOLIN_RS19165 -1.0 -2.3 transcriptional regulator compare
ECOLIN_RS06485 -1.0 -1.6 spermidine/putrescine ABC transporter ATP-binding protein PotA compare
ECOLIN_RS11485 -1.0 -1.7 toxic metabolite efflux MATE transporter YeeO compare
ECOLIN_RS24270 -1.0 -1.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
ECOLIN_RS13880 -1.0 -3.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
ECOLIN_RS11910 -1.0 -1.1 exodeoxyribonuclease I compare
ECOLIN_RS18730 -1.0 -1.4 DNA-binding transcriptional regulator Fis compare
ECOLIN_RS18790 -1.0 -2.0 amino acid ABC transporter ATP-binding protein compare
ECOLIN_RS13090 -1.0 -1.9 MFS transporter compare
ECOLIN_RS24595 -1.0 -2.4 alpha,alpha-phosphotrehalase compare
ECOLIN_RS13910 -0.9 -2.1 sulfate/thiosulfate ABC transporter permease CysW compare
ECOLIN_RS04935 -0.9 -2.2 aminopeptidase N compare
ECOLIN_RS22555 -0.9 -4.8 6-phosphofructokinase compare
ECOLIN_RS12690 -0.9 -0.9 sugar efflux transporter SetB compare
ECOLIN_RS17235 -0.9 -1.5 hydrogenase maturation nickel metallochaperone HypA compare
ECOLIN_RS15450 -0.9 -1.9 FAD-binding oxidoreductase compare
ECOLIN_RS17350 -0.9 -1.3 lipoprotein YqhH compare
ECOLIN_RS10670 -0.9 -1.2 3'-5' exonuclease compare
ECOLIN_RS13295 -0.9 -2.3 alanine transaminase AlaA compare
ECOLIN_RS13310 -0.9 -1.4 hexitol phosphatase HxpA compare
ECOLIN_RS21705 -0.9 -3.4 thioredoxin TrxA compare
ECOLIN_RS15750 -0.9 -1.2 hypothetical protein compare
ECOLIN_RS23565 -0.9 -1.2 cytochrome c nitrite reductase Fe-S protein compare
ECOLIN_RS19710 -0.9 -1.3 YrhB family protein compare
ECOLIN_RS14580 -0.9 -3.6 ATP-dependent RNA helicase SrmB compare
ECOLIN_RS07480 -0.9 -3.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ECOLIN_RS15635 -0.9 -1.2 L-fucose operon activator compare
ECOLIN_RS33120 -0.9 -2.8 protein YtgA compare
ECOLIN_RS16125 -0.9 -1.8 site-specific tyrosine recombinase XerD compare
ECOLIN_RS07890 -0.9 -1.0 carbohydrate ABC transporter permease compare
ECOLIN_RS02265 -0.8 -0.9 taurine ABC transporter permease TauC compare
ECOLIN_RS03755 -0.8 -1.2 two-component system sensor histidine kinase KdpD compare
ECOLIN_RS23475 -0.8 -1.5 secondary thiamine-phosphate synthase enzyme YjbQ compare
ECOLIN_RS22965 -0.8 -1.7 tRNA-Thr compare
ECOLIN_RS03735 -0.8 -1.0 putrescine-ornithine antiporter compare
ECOLIN_RS21450 -0.8 -4.0 phosphate ABC transporter substrate-binding protein PstS compare
ECOLIN_RS12405 -0.8 -1.9 DUF4132 domain-containing protein YehI compare
ECOLIN_RS12930 -0.8 -1.9 FAD:protein FMN transferase ApbE compare
ECOLIN_RS11060 -0.8 -2.0 flagellar basal-body MS-ring/collar protein FliF compare
ECOLIN_RS00430 -0.8 -2.3 catabolite repressor/activator compare
ECOLIN_RS00635 -0.8 -2.2 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
ECOLIN_RS03925 -0.8 -1.3 Tol-Pal system protein TolQ compare
ECOLIN_RS07560 -0.8 -1.3 TonB system transport protein TonB compare
ECOLIN_RS05550 -0.8 -1.1 adhesin compare
ECOLIN_RS18850 -0.8 -1.3 type I DNA topoisomerase compare
ECOLIN_RS00275 -0.8 -1.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
ECOLIN_RS20645 -0.8 -1.6 ADP-glyceromanno-heptose 6-epimerase compare
ECOLIN_RS09815 -0.8 -1.4 SEL1-like repeat protein compare
ECOLIN_RS18605 -0.8 -2.5 ribonuclease G compare
ECOLIN_RS22300 -0.8 -2.5 nitrogen regulation protein NR(II) compare
ECOLIN_RS00265 -0.8 -0.8 type II toxin-antitoxin system CcdA family antitoxin compare
ECOLIN_RS17375 -0.8 -1.4 Ldh family oxidoreductase compare
ECOLIN_RS16340 -0.8 -5.6 agmatinase compare
ECOLIN_RS18560 -0.8 -2.2 transcriptional regulator ArgR compare
ECOLIN_RS12300 -0.8 -1.4 tagatose-bisphosphate aldolase subunit GatY compare
ECOLIN_RS00080 -0.8 -1.3 molecular chaperone DnaJ compare
ECOLIN_RS24230 -0.8 -1.0 RNA chaperone Hfq compare
ECOLIN_RS14695 -0.8 -0.8 bifunctional chorismate mutase/prephenate dehydratase compare
ECOLIN_RS02355 -0.8 -1.0 shikimate kinase AroL compare
ECOLIN_RS12160 -0.8 -1.8 uridine kinase compare
ECOLIN_RS12890 -0.8 -1.5 chaperone NapD compare
ECOLIN_RS00155 -0.8 -2.0 DUF805 domain-containing protein compare
ECOLIN_RS04375 -0.7 -0.9 sugar-phosphatase YbiV compare
ECOLIN_RS16120 -0.7 -3.7 bifunctional protein-disulfide isomerase/oxidoreductase DsbC compare
ECOLIN_RS22160 -0.7 -5.5 NAD(P)H-flavin reductase compare
ECOLIN_RS22020 -0.7 -1.0 MurR/RpiR family transcriptional regulator compare
ECOLIN_RS02645 -0.7 -1.3 peptidylprolyl isomerase compare
ECOLIN_RS22535 -0.7 -1.4 envelope stress sensor histidine kinase CpxA compare
ECOLIN_RS07800 -0.7 -1.8 multidrug effflux MFS transporter compare
ECOLIN_RS15950 -0.7 -1.4 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD compare
ECOLIN_RS12520 -0.7 -1.0 multidrug resistance outer membrane protein MdtQ compare
ECOLIN_RS05515 -0.7 -0.8 beta-ketoacyl synthase chain length factor compare
ECOLIN_RS09200 -0.7 -1.3 N-ethylmaleimide reductase compare
ECOLIN_RS16130 -0.7 -2.9 flavodoxin FldB compare
ECOLIN_RS18175 -0.7 -3.9 polyribonucleotide nucleotidyltransferase compare
ECOLIN_RS25100 -0.7 -1.6 ribosomal protein S18-alanine N-acetyltransferase compare
ECOLIN_RS00845 -0.7 -1.7 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
ECOLIN_RS03110 -0.7 -2.7 bacteriophage adsorption protein NfrA compare
ECOLIN_RS15170 -0.7 -1.8 helix-turn-helix domain-containing protein compare
ECOLIN_RS12115 -0.7 -0.7 colanic acid biosynthesis glycosyltransferase WcaC compare
ECOLIN_RS00315 -0.7 -5.4 RNA polymerase-associated protein RapA compare
ECOLIN_RS14640 -0.7 -1.2 alpha-ketoglutarate permease compare
ECOLIN_RS01145 -0.7 -2.7 endonuclease/exonuclease/phosphatase family protein compare
ECOLIN_RS10195 -0.7 -0.9 RNA chaperone ProQ compare
ECOLIN_RS19420 -0.7 -1.7 Hsp33 family molecular chaperone HslO compare
ECOLIN_RS19500 -0.7 -3.9 Fe-S biogenesis protein NfuA compare
ECOLIN_RS12305 -0.7 -1.0 class I fructose-bisphosphate aldolase compare
ECOLIN_RS20690 -0.7 -2.0 lipopolysaccharide core heptose(I) kinase RfaP compare
ECOLIN_RS27590 -0.7 -0.8 DUF5983 family protein compare
ECOLIN_RS30470 -0.7 -1.0 IS3 family transposase compare
ECOLIN_RS31805 -0.7 -2.6 lipoate--protein ligase LplA compare
ECOLIN_RS10770 -0.7 -1.2 methyl-accepting chemotaxis protein II compare
ECOLIN_RS15925 -0.6 -2.3 HTH-type transcriptional regulator GalR compare
ECOLIN_RS15430 -0.6 -1.6 glycerol-3-phosphate responsive antiterminator compare
ECOLIN_RS09665 -0.6 -0.9 chitin disaccharide deacetylase compare
ECOLIN_RS06900 -0.6 -0.8 minor capsid protein E compare
ECOLIN_RS13170 -0.6 -1.3 o-succinylbenzoate synthase compare
ECOLIN_RS24775 -0.6 -0.7 type 1 fimbria chaperone FimC compare
ECOLIN_RS04085 -0.6 -1.6 6-phosphogluconolactonase compare
ECOLIN_RS24570 -0.6 -2.3 metalloprotease PmbA compare
ECOLIN_RS19360 -0.6 -2.0 3-dehydroquinate synthase compare
ECOLIN_RS06355 -0.6 -0.8 PTS glucose transporter subunit IIBC compare
ECOLIN_RS03615 -0.6 -2.1 N-acetylglucosamine-6-phosphate deacetylase compare
ECOLIN_RS13185 -0.6 -0.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase compare
ECOLIN_RS24535 -0.6 -3.1 galactofuranose ABC transporter substrate-binding protein YtfQ compare
ECOLIN_RS14995 -0.6 -1.5 YqaA family protein compare
ECOLIN_RS02495 -0.6 -1.1 DUF3251 domain-containing protein compare
ECOLIN_RS25170 -0.6 -1.2 helix-turn-helix transcriptional regulator compare
ECOLIN_RS14990 -0.6 -2.8 glutamate--cysteine ligase compare
ECOLIN_RS17065 -0.6 -0.8 type II secretion system minor pseudopilin GspH compare
ECOLIN_RS04530 -0.6 -1.4 nitroreductase NfsA compare
ECOLIN_RS25045 -0.6 -2.0 threonine/serine exporter ThrE family protein compare
ECOLIN_RS19985 -0.6 -0.7 oligopeptidase A compare
ECOLIN_RS12070 -0.6 -0.9 colanic acid biosynthesis phosphomannomutase CpsG compare
ECOLIN_RS09955 -0.6 -0.7 diguanylate cyclase DgcJ compare
ECOLIN_RS26350 -0.6 -1.1 hypothetical protein compare
ECOLIN_RS10095 -0.6 -0.7 cyclic diguanylate phosphodiesterase compare
ECOLIN_RS19960 -0.6 -3.6 inorganic phosphate transporter PitA compare
ECOLIN_RS26670 -0.6 -1.2 IS3 family transposase compare
ECOLIN_RS04140 -0.6 -1.8 malonyl-ACP O-methyltransferase BioC compare
ECOLIN_RS00240 -0.6 -1.1 ferredoxin-like protein FixX compare
ECOLIN_RS15510 -0.6 -2.4 nucleoside triphosphate pyrophosphohydrolase compare


Specific Phenotypes

None in this experiment

For Escherichia coli Nissle 1917 in phage experiments

For phage MOI 10 across organisms