Experiment set1S53 for Enterobacter sp. TBS_079

Compare to:

D-Xyl carbon source

200 most important genes:

  gene name fitness t score description  
MPMX20_02514 -7.6 -5.3 Tryptophan synthase alpha chain compare
MPMX20_01566 -7.3 -11.1 Phosphoserine aminotransferase compare
MPMX20_00768 -7.2 -9.9 3-isopropylmalate dehydrogenase compare
MPMX20_00693 -7.1 -4.9 Phosphoserine phosphatase compare
MPMX20_03005 -6.6 -6.5 Imidazole glycerol phosphate synthase subunit HisH compare
MPMX20_02513 -6.6 -13.4 Tryptophan synthase beta chain compare
MPMX20_00927 -6.5 -15.3 Glutamate 5-kinase compare
MPMX20_03001 -6.5 -13.3 ATP phosphoribosyltransferase compare
MPMX20_03004 -6.5 -9.9 Histidine biosynthesis bifunctional protein HisB compare
MPMX20_00766 -6.5 -6.3 3-isopropylmalate dehydratase small subunit 1 compare
MPMX20_04524 -6.5 -11.7 Phosphoenolpyruvate carboxylase compare
MPMX20_03002 -6.5 -14.5 Histidinol dehydrogenase compare
MPMX20_00928 -6.5 -12.4 Gamma-glutamyl phosphate reductase compare
MPMX20_00230 -6.4 -7.6 Homoserine O-succinyltransferase compare
MPMX20_00712 -6.4 -12.3 Threonine synthase compare
MPMX20_04499 -6.3 -11.3 Dihydroxy-acid dehydratase compare
MPMX20_03003 -6.3 -12.0 Histidinol-phosphate aminotransferase compare
MPMX20_00767 -6.2 -9.5 3-isopropylmalate dehydratase large subunit 1 compare
MPMX20_03771 -6.2 -12.6 D-3-phosphoglycerate dehydrogenase compare
MPMX20_00711 -6.2 -13.2 Homoserine kinase compare
MPMX20_00225 -6.1 -6.0 Phosphoribosylamine--glycine ligase compare
MPMX20_03008 -6.1 -10.2 Histidine biosynthesis bifunctional protein HisIE compare
MPMX20_04497 -6.1 -8.4 HTH-type transcriptional regulator GltC compare
MPMX20_01097 -6.1 -5.9 N5-carboxyaminoimidazole ribonucleotide synthase compare
MPMX20_04077 -6.0 -10.1 Argininosuccinate synthase compare
MPMX20_01098 -6.0 -4.2 N5-carboxyaminoimidazole ribonucleotide mutase compare
MPMX20_04531 -6.0 -10.8 Cystathionine gamma-synthase compare
MPMX20_00165 -5.9 -32.4 Xylose isomerase conserved
MPMX20_01349 -5.9 -4.1 Citrate synthase compare
MPMX20_00710 -5.9 -17.8 Bifunctional aspartokinase/homoserine dehydrogenase 1 compare
MPMX20_04498 -5.9 -10.6 L-threonine dehydratase biosynthetic IlvA compare
MPMX20_03354 -5.8 -10.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
MPMX20_02512 -5.8 -13.5 Tryptophan biosynthesis protein TrpCF compare
MPMX20_01354 -5.7 -3.9 2-oxoglutarate dehydrogenase E1 component compare
MPMX20_04452 -5.6 -12.0 HTH-type transcriptional regulator MetR compare
MPMX20_00831 -5.6 -3.9 RNA polymerase-binding transcription factor DksA compare
MPMX20_03006 -5.6 -9.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
MPMX20_03247 -5.5 -7.6 Amidophosphoribosyltransferase compare
MPMX20_03681 -5.4 -16.1 Amino-acid acetyltransferase compare
MPMX20_04126 -5.4 -24.8 Glutamate synthase [NADPH] large chain compare
MPMX20_04520 -5.3 -9.6 Argininosuccinate lyase compare
MPMX20_03338 -5.3 -5.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase compare
MPMX20_01567 -5.3 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
MPMX20_00161 -5.3 -15.5 Xylose operon regulatory protein conserved
MPMX20_03706 -5.3 -11.7 Octopine catabolism/uptake operon regulatory protein OccR compare
MPMX20_04127 -5.3 -18.0 Glutamate synthase [NADPH] small chain compare
MPMX20_04496 -5.3 -6.3 Ketol-acid reductoisomerase (NADP(+)) compare
MPMX20_04162 -5.2 -3.6 3-dehydroquinate dehydratase compare
MPMX20_03705 -5.2 -13.9 Diaminopimelate decarboxylase compare
MPMX20_01950 -5.2 -5.0 Major outer membrane lipoprotein Lpp 1 compare
MPMX20_04523 -5.2 -11.5 Acetylornithine deacetylase compare
MPMX20_03468 -5.1 -10.2 T-protein compare
MPMX20_04521 -5.1 -9.2 Acetylglutamate kinase compare
MPMX20_04442 -5.1 -3.5 Sec-independent protein translocase protein TatC compare
MPMX20_03852 -5.1 -16.8 Cystathionine beta-lyase MetC compare
MPMX20_00166 -5.0 -17.0 Xylulose kinase conserved
MPMX20_04522 -5.0 -10.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
MPMX20_03426 -5.0 -14.7 Phosphoribosylformylglycinamidine synthase compare
MPMX20_00226 -4.9 -6.7 Bifunctional purine biosynthesis protein PurH compare
MPMX20_00544 -4.9 -4.8 Aspartate carbamoyltransferase catalytic subunit compare
MPMX20_00453 -4.8 -3.3 RNA-binding protein Hfq compare
MPMX20_04768 -4.8 -19.0 hypothetical protein compare
MPMX20_00740 -4.8 -3.3 Carbamoyl-phosphate synthase large chain compare
MPMX20_03264 -4.8 -7.3 Chorismate synthase compare
MPMX20_02494 -4.8 -3.3 Orotidine 5'-phosphate decarboxylase compare
MPMX20_00976 -4.8 -6.5 Pyrroline-5-carboxylate reductase compare
MPMX20_03641 -4.7 -10.5 Phosphoadenosine phosphosulfate reductase compare
MPMX20_01355 -4.5 -1.7 Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex compare
MPMX20_03636 -4.5 -7.3 Adenylyl-sulfate kinase compare
MPMX20_01741 -4.4 -3.0 Dihydroorotase compare
MPMX20_00739 -4.4 -3.0 Carbamoyl-phosphate synthase small chain compare
MPMX20_02511 -4.4 -14.3 Bifunctional protein TrpGD compare
MPMX20_03090 -4.3 -2.3 Methionine--tRNA ligase compare
MPMX20_04278 -4.3 -4.1 3-dehydroquinate synthase compare
MPMX20_03466 -4.2 -8.1 Bifunctional chorismate mutase/prephenate dehydratase compare
MPMX20_01596 -4.1 -9.2 Dihydroorotate dehydrogenase (quinone) compare
MPMX20_03308 -4.1 -8.6 Cysteine synthase A compare
MPMX20_00093 -4.0 -2.8 Orotate phosphoribosyltransferase compare
MPMX20_04444 -4.0 -2.2 Sec-independent protein translocase protein TatA compare
MPMX20_03007 -3.9 -5.5 Imidazole glycerol phosphate synthase subunit HisF compare
MPMX20_01382 -3.9 -3.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
MPMX20_00807 -3.8 -2.6 Pyruvate dehydrogenase E1 component compare
MPMX20_02770 -3.8 -6.7 Dihydroneopterin triphosphate diphosphatase compare
MPMX20_04189 -3.7 -6.7 Shikimate dehydrogenase (NADP(+)) compare
MPMX20_04443 -3.7 -4.2 Sec-independent protein translocase protein TatB compare
MPMX20_02596 -3.6 -12.9 Formyltetrahydrofolate deformylase compare
MPMX20_00769 -3.6 -10.0 2-isopropylmalate synthase compare
MPMX20_03986 -3.6 -3.5 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
MPMX20_04275 -3.6 -2.5 Ribulose-phosphate 3-epimerase compare
MPMX20_02510 -3.5 -14.5 Anthranilate synthase component 1 compare
MPMX20_03642 -3.5 -13.3 Sulfite reductase [NADPH] hemoprotein beta-component compare
MPMX20_03643 -3.5 -12.6 Sulfite reductase [NADPH] flavoprotein alpha-component compare
MPMX20_02591 -3.4 -7.9 DNA-binding protein H-NS compare
MPMX20_04639 -3.3 -2.6 Phosphate-binding protein PstS compare
MPMX20_03018 -3.2 -5.3 hypothetical protein compare
MPMX20_04650 -3.2 -3.1 tRNA modification GTPase MnmE compare
MPMX20_02869 -3.0 -21.6 hypothetical protein compare
MPMX20_03685 -2.9 -2.9 RecBCD enzyme subunit RecC compare
MPMX20_03310 -2.9 -4.8 Phosphoenolpyruvate-protein phosphotransferase compare
MPMX20_01551 -2.9 -6.4 Leucine-responsive regulatory protein compare
MPMX20_04595 -2.9 -2.0 Glutamine synthetase compare
MPMX20_00556 -2.8 -10.3 Ornithine carbamoyltransferase subunit F compare
MPMX20_04483 -2.8 -1.9 Lipid III flippase compare
MPMX20_04626 -2.8 -2.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG compare
MPMX20_03019 -2.8 -16.3 hypothetical protein compare
MPMX20_00492 -2.7 -8.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
MPMX20_01366 -2.7 -3.5 Tol-Pal system protein TolQ compare
MPMX20_01028 -2.7 -1.9 ATP-dependent Clp protease proteolytic subunit compare
MPMX20_04119 -2.7 -3.1 DNA polymerase III subunit chi compare
MPMX20_04440 -2.7 -2.6 Transcription antitermination protein RfaH compare
MPMX20_00721 -2.7 -4.4 Chaperone protein DnaJ compare
MPMX20_04597 -2.7 -9.3 DNA-binding transcriptional regulator NtrC compare
MPMX20_01552 -2.6 -6.6 hypothetical protein compare
MPMX20_04530 -2.5 -10.1 Bifunctional aspartokinase/homoserine dehydrogenase 2 compare
MPMX20_03022 -2.5 -1.7 D-inositol-3-phosphate glycosyltransferase compare
MPMX20_02766 -2.5 -5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
MPMX20_01367 -2.5 -7.7 Tol-Pal system protein TolR compare
MPMX20_04552 -2.3 -5.4 ATP-dependent 6-phosphofructokinase isozyme 1 compare
MPMX20_03683 -2.3 -2.7 RecBCD enzyme subunit RecB compare
MPMX20_02672 -2.3 -16.7 hypothetical protein compare
MPMX20_03010 -2.3 -6.3 UDP-glucose 4-epimerase compare
MPMX20_01029 -2.3 -4.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
MPMX20_04469 -2.2 -3.7 Adenylate cyclase compare
MPMX20_04279 -2.2 -4.0 Shikimate kinase 1 compare
MPMX20_00745 -2.2 -5.3 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical compare
MPMX20_03753 -2.1 -7.2 Tyrosine recombinase XerD compare
MPMX20_04601 -2.1 -3.3 DNA polymerase I compare
MPMX20_01969 -2.1 -4.2 Carbonic anhydrase 1 compare
MPMX20_00106 -2.0 -6.0 Lipopolysaccharide core biosynthesis protein RfaG compare
MPMX20_00102 -2.0 -1.9 hypothetical protein compare
MPMX20_01369 -2.0 -8.7 Tol-Pal system protein TolB compare
MPMX20_00109 -2.0 -14.2 hypothetical protein compare
MPMX20_03021 -1.9 -8.3 hypothetical protein compare
MPMX20_01030 -1.9 -7.6 Lon protease compare
MPMX20_03490 -1.9 -6.5 SsrA-binding protein compare
MPMX20_03780 -1.9 -6.3 Transketolase 1 compare
MPMX20_02574 -1.9 -3.1 putative intracellular septation protein A compare
MPMX20_02767 -1.9 -4.7 Holliday junction ATP-dependent DNA helicase RuvA compare
MPMX20_00899 -1.9 -2.5 Ribonuclease HI compare
MPMX20_01972 -1.8 -1.8 tRNA-Val compare
MPMX20_04489 -1.8 -12.1 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
MPMX20_03209 -1.7 -2.3 NADH-quinone oxidoreductase subunit K compare
MPMX20_00108 -1.7 -12.6 hypothetical protein compare
MPMX20_00812 -1.7 -6.5 Aconitate hydratase B compare
MPMX20_00110 -1.7 -11.4 hypothetical protein compare
MPMX20_04110 -1.7 -4.8 Nitrogen regulatory protein compare
MPMX20_00570 -1.6 -9.9 putative BsuMI modification methylase subunit YdiO compare
MPMX20_03020 -1.6 -7.5 hypothetical protein compare
MPMX20_00452 -1.6 -6.7 tRNA dimethylallyltransferase compare
MPMX20_02475 -1.6 -4.1 Putrescine export system permease protein SapB compare
MPMX20_01550 -1.6 -3.0 Thioredoxin reductase compare
MPMX20_03267 -1.6 -2.9 Phosphohistidine phosphatase SixA compare
MPMX20_04640 -1.6 -3.2 Phosphate transport system permease protein PstC compare
MPMX20_03047 -1.5 -5.0 dCTP deaminase compare
MPMX20_00164 -1.5 -13.3 D-xylose-binding periplasmic protein conserved
MPMX20_02546 -1.5 -3.1 hypothetical protein compare
MPMX20_04596 -1.5 -7.8 Sensory histidine kinase/phosphatase NtrB compare
MPMX20_04463 -1.5 -5.6 DNA helicase II compare
MPMX20_02593 -1.4 -9.4 Regulator of RpoS compare
MPMX20_04467 -1.4 -5.5 Diaminopimelate epimerase compare
MPMX20_01765 -1.4 -2.8 Ribonuclease E compare
MPMX20_00105 -1.4 -7.7 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase compare
MPMX20_01368 -1.4 -3.4 hypothetical protein compare
MPMX20_03248 -1.4 -2.4 Colicin V production protein compare
MPMX20_01570 -1.4 -2.3 Integration host factor subunit beta compare
MPMX20_04642 -1.4 -2.1 Phosphate import ATP-binding protein PstB compare
MPMX20_03440 -1.4 -3.2 Elongation factor 4 compare
MPMX20_04140 -1.4 -5.6 Malate dehydrogenase compare
MPMX20_01334 -1.4 -6.1 Phosphoglucomutase compare
MPMX20_00773 -1.4 -6.6 Catabolite repressor/activator compare
MPMX20_02116 -1.4 -2.1 hypothetical protein compare
MPMX20_03017 -1.4 -7.3 hypothetical protein compare
MPMX20_01356 -1.3 -5.9 Succinate--CoA ligase [ADP-forming] subunit beta compare
MPMX20_02776 -1.3 -4.9 tRNA U34 carboxymethyltransferase compare
MPMX20_00747 -1.3 -3.8 Ribosomal RNA small subunit methyltransferase A compare
MPMX20_03638 -1.3 -7.7 Sulfate adenylyltransferase subunit 2 compare
MPMX20_03214 -1.3 -4.8 NADH-quinone oxidoreductase subunit F compare
MPMX20_00720 -1.3 -2.1 Chaperone protein DnaK compare
MPMX20_00197 -1.3 -1.5 tRNA-Tyr compare
MPMX20_04641 -1.3 -2.6 Phosphate transport system permease protein PstA compare
MPMX20_04529 -1.3 -4.9 5,10-methylenetetrahydrofolate reductase compare
MPMX20_03382 -1.3 -0.9 Inosine-5'-monophosphate dehydrogenase compare
MPMX20_03208 -1.3 -4.7 NADH-quinone oxidoreductase subunit L compare
MPMX20_00775 -1.3 -2.5 Ribosomal RNA small subunit methyltransferase H compare
MPMX20_02477 -1.3 -3.6 Peptide transport system ATP-binding protein SapD compare
MPMX20_01357 -1.3 -3.4 Succinate--CoA ligase [ADP-forming] subunit alpha compare
MPMX20_04585 -1.3 -3.9 HTH-type transcriptional repressor CsqR compare
MPMX20_04170 -1.2 -1.8 DNA-binding protein Fis compare
MPMX20_04197 -1.2 -4.2 Trk system potassium uptake protein TrkA compare
MPMX20_00163 -1.2 -7.4 Xylose import ATP-binding protein XylG conserved
MPMX20_01607 -1.2 -5.0 Outer membrane protein A compare
MPMX20_03591 -1.2 -5.5 Glucitol operon repressor compare
MPMX20_02701 -1.2 -1.7 Fatty acid metabolism regulator protein compare
MPMX20_00086 -1.2 -3.0 Bifunctional (p)ppGpp synthase/hydrolase SpoT compare
MPMX20_02102 -1.1 -1.7 hypothetical protein compare
MPMX20_04628 -1.1 -2.6 ATP synthase protein I compare
MPMX20_03211 -1.1 -3.3 NADH-quinone oxidoreductase subunit I compare
MPMX20_04731 -1.1 -4.3 Plasmid-derived single-stranded DNA-binding protein compare
MPMX20_02768 -1.1 -2.1 Crossover junction endodeoxyribonuclease RuvC compare
MPMX20_01370 -1.1 -3.3 Peptidoglycan-associated lipoprotein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source D-Xylose in Enterobacter sp. TBS_079

For carbon source D-Xylose across organisms