Experiment set1S482 for Escherichia coli Nissle 1917

Compare to:

Bas22

200 most important genes:

  gene name fitness t score description  
ECOLIN_RS22150 -6.2 -7.4 transcription/translation regulatory transformer protein RfaH compare
ECOLIN_RS13885 -6.1 -4.2 PTS glucose transporter subunit IIA compare
ECOLIN_RS17010 -5.8 -5.2 polysaccharide biosynthesis/export family protein compare
ECOLIN_RS21740 -5.6 -3.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
ECOLIN_RS14355 -5.4 -5.2 iron-sulfur cluster assembly protein IscA compare
ECOLIN_RS17005 -4.8 -4.6 capsule polysaccharide export inner-membrane protein KpsE compare
ECOLIN_RS21725 -4.5 -10.4 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
ECOLIN_RS14790 -4.4 -3.1 type II toxin-antitoxin system toxin RatA compare
ECOLIN_RS14345 -4.2 -6.4 Fe-S protein assembly chaperone HscA compare
ECOLIN_RS18465 -4.2 -2.9 aerobic respiration two-component sensor histidine kinase ArcB compare
ECOLIN_RS15840 -4.2 -2.9 exodeoxyribonuclease V subunit gamma compare
ECOLIN_RS21780 -3.9 -6.5 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
ECOLIN_RS25600 -3.8 -1.7 K5 polysaccharide biosynthesis glycosyltransferase KfiC compare
ECOLIN_RS16180 -3.8 -2.6 FAD-dependent 2-octaprenylphenol hydroxylase compare
ECOLIN_RS03435 -3.7 -3.6 lipoyl(octanoyl) transferase LipB compare
ECOLIN_RS14350 -3.6 -4.3 co-chaperone HscB compare
ECOLIN_RS18725 -3.6 -10.0 tRNA dihydrouridine synthase DusB compare
ECOLIN_RS14340 -3.4 -3.3 ISC system 2Fe-2S type ferredoxin compare
ECOLIN_RS18540 -3.4 -4.6 Z-ring associated protein ZapG compare
ECOLIN_RS22870 -3.4 -7.6 DNA-binding transcriptional regulator OxyR compare
ECOLIN_RS18730 -3.4 -2.9 DNA-binding transcriptional regulator Fis compare
ECOLIN_RS16185 -3.3 -2.3 2-octaprenyl-6-methoxyphenyl hydroxylase compare
ECOLIN_RS12885 -3.2 -2.0 periplasmic nitrate reductase subunit alpha compare
ECOLIN_RS21735 -3.1 -7.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
ECOLIN_RS19510 -3.1 -10.6 4-alpha-glucanotransferase compare
ECOLIN_RS25595 -3.0 -2.0 K5 polysaccharide biosynthesis UDP-glucose dehydrogenase KfiD compare
ECOLIN_RS13310 -2.9 -2.8 hexitol phosphatase HxpA compare
ECOLIN_RS00640 -2.9 -7.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ECOLIN_RS20700 -2.9 -7.0 lipopolysaccharide core heptosyltransferase RfaQ compare
ECOLIN_RS17020 -2.8 -1.7 capsular polysaccharide biosynthesis protein compare
ECOLIN_RS00645 -2.8 -4.2 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase compare
ECOLIN_RS03560 -2.7 -3.2 3-demethoxyubiquinol 3-hydroxylase compare
ECOLIN_RS16130 -2.7 -5.2 flavodoxin FldB compare
ECOLIN_RS10325 -2.6 -2.3 DNA-binding transcriptional regulator HexR compare
ECOLIN_RS21690 -2.6 -2.5 DNA helicase Rep compare
ECOLIN_RS13330 -2.6 -3.1 acetate kinase compare
ECOLIN_RS03695 -2.6 -3.3 ferric iron uptake transcriptional regulator compare
ECOLIN_RS13285 -2.6 -3.2 NADH-quinone oxidoreductase subunit NuoA compare
ECOLIN_RS13250 -2.6 -5.4 NADH-quinone oxidoreductase subunit NuoI compare
ECOLIN_RS20675 -2.5 -1.6 lipopolysaccharide core heptose(II) kinase RfaY compare
ECOLIN_RS19500 -2.5 -9.5 Fe-S biogenesis protein NfuA compare
ECOLIN_RS13880 -2.5 -7.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
ECOLIN_RS23330 -2.4 -1.9 diacylglycerol kinase compare
ECOLIN_RS13225 -2.4 -7.1 NADH-quinone oxidoreductase subunit NuoN compare
ECOLIN_RS13230 -2.4 -4.3 NADH-quinone oxidoreductase subunit M compare
ECOLIN_RS20665 -2.4 -3.2 glycosyltransferase family A protein compare
ECOLIN_RS20620 -2.3 -2.7 murein hydrolase activator EnvC compare
ECOLIN_RS13245 -2.3 -3.3 NADH-quinone oxidoreductase subunit J compare
ECOLIN_RS13335 -2.3 -2.2 phosphate acetyltransferase compare
ECOLIN_RS19960 -2.3 -9.1 inorganic phosphate transporter PitA compare
ECOLIN_RS13875 -2.3 -4.3 phosphocarrier protein Hpr compare
ECOLIN_RS16105 -2.2 -3.0 lysine--tRNA ligase compare
ECOLIN_RS13280 -2.2 -8.5 NADH-quinone oxidoreductase subunit NuoB compare
ECOLIN_RS13235 -2.2 -9.0 NADH-quinone oxidoreductase subunit L compare
ECOLIN_RS14990 -2.2 -5.9 glutamate--cysteine ligase compare
ECOLIN_RS20660 -2.2 -5.1 O-antigen ligase family protein compare
ECOLIN_RS15935 -2.1 -0.9 DNA-binding transcriptional regulator LysR compare
ECOLIN_RS13275 -2.1 -7.1 NADH-quinone oxidoreductase subunit C/D compare
ECOLIN_RS13265 -2.1 -6.3 NADH-quinone oxidoreductase subunit NuoF compare
ECOLIN_RS22120 -2.1 -1.3 ubiquinone biosynthesis protein UbiJ compare
ECOLIN_RS24230 -2.1 -1.9 RNA chaperone Hfq compare
ECOLIN_RS19350 -2.1 -3.7 adenine-specific DNA-methyltransferase compare
ECOLIN_RS22160 -2.0 -12.3 NAD(P)H-flavin reductase compare
ECOLIN_RS02745 -2.0 -1.6 Hha toxicity modulator TomB compare
ECOLIN_RS06095 -2.0 -4.2 glucans biosynthesis glucosyltransferase MdoH compare
ECOLIN_RS06400 -2.0 -6.7 NADH-quinone dehydrogenase compare
ECOLIN_RS04085 -2.0 -3.4 6-phosphogluconolactonase compare
ECOLIN_RS06735 -1.9 -1.7 phage N-6-adenine-methyltransferase compare
ECOLIN_RS17025 -1.9 -1.7 capsular biosynthesis protein compare
ECOLIN_RS18405 -1.9 -2.2 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
ECOLIN_RS17015 -1.8 -5.0 3-deoxy-manno-octulosonate cytidylyltransferase compare
ECOLIN_RS25110 -1.8 -6.9 peptide chain release factor 3 compare
ECOLIN_RS05340 -1.7 -1.5 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA compare
ECOLIN_RS10685 -1.7 -1.3 DUF72 domain-containing protein compare
ECOLIN_RS15095 -1.7 -2.4 transcriptional regulator GutM compare
ECOLIN_RS02545 -1.7 -1.7 exodeoxyribonuclease VII small subunit compare
ECOLIN_RS02160 -1.7 -1.7 2-methylcitrate dehydratase compare
ECOLIN_RS02635 -1.7 -6.8 endopeptidase La compare
ECOLIN_RS27050 -1.7 -1.6 restriction endonuclease compare
ECOLIN_RS13255 -1.7 -3.7 NADH-quinone oxidoreductase subunit NuoH compare
ECOLIN_RS02125 -1.7 -1.7 NADPH-dependent aldehyde reductase YahK compare
ECOLIN_RS07165 -1.6 -1.7 disulfide bond formation protein DsbB compare
ECOLIN_RS03615 -1.6 -4.1 N-acetylglucosamine-6-phosphate deacetylase compare
ECOLIN_RS21905 -1.6 -6.0 magnesium/cobalt transporter CorA compare
ECOLIN_RS22315 -1.5 -8.9 ribosome-dependent GTPase TypA compare
ECOLIN_RS18410 -1.5 -1.3 LPS export ABC transporter periplasmic protein LptC compare
ECOLIN_RS00525 -1.5 -2.1 8-oxo-dGTP diphosphatase MutT compare
ECOLIN_RS10045 -1.5 -2.4 Slp family lipoprotein YeaY compare
ECOLIN_RS01920 -1.5 -1.1 type B 50S ribosomal protein L36 compare
ECOLIN_RS17430 -1.4 -5.4 quorum sensing histidine kinase QseC compare
ECOLIN_RS14540 -1.4 -2.5 translation elongation factor 4 compare
ECOLIN_RS05495 -1.4 -1.2 hypothetical protein compare
ECOLIN_RS14675 -1.4 -5.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
ECOLIN_RS21515 -1.4 -5.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ECOLIN_RS22305 -1.4 -1.8 glutamate--ammonia ligase compare
ECOLIN_RS20185 -1.4 -6.6 biofilm formation regulator HmsP compare
ECOLIN_RS07480 -1.4 -3.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ECOLIN_RS02585 -1.4 -5.2 cytochrome o ubiquinol oxidase subunit III compare
ECOLIN_RS00585 -1.4 -1.4 carboxylating nicotinate-nucleotide diphosphorylase compare
ECOLIN_RS14455 -1.3 -2.4 two-component system response regulator GlrR compare
ECOLIN_RS30720 -1.3 -1.2 condensation domain-containing protein compare
ECOLIN_RS19170 -1.3 -6.9 FKBP-type peptidyl-prolyl cis-trans isomerase compare
ECOLIN_RS16330 -1.3 -3.1 transketolase compare
ECOLIN_RS24565 -1.3 -2.4 ribosome biogenesis factor YjgA compare
ECOLIN_RS12640 -1.2 -1.6 deoxyribonuclease IV compare
ECOLIN_RS17300 -1.2 -2.0 TonB system transport protein ExbD compare
ECOLIN_RS13260 -1.2 -4.8 NADH-quinone oxidoreductase subunit NuoG compare
ECOLIN_RS20090 -1.2 -1.1 acid resistance transcriptional activator GadE compare
ECOLIN_RS05270 -1.2 -1.0 3-aminoacrylate deaminase compare
ECOLIN_RS01820 -1.2 -2.1 phosphoporin PhoE compare
ECOLIN_RS15120 -1.2 -1.2 anaerobic nitric oxide reductase flavorubredoxin compare
ECOLIN_RS22285 -1.2 -6.8 oxygen-independent coproporphyrinogen III oxidase compare
ECOLIN_RS19515 -1.2 -7.1 maltodextrin phosphorylase conserved
ECOLIN_RS15590 -1.2 -1.9 HAAAP family serine/threonine permease SdaC compare
ECOLIN_RS20085 -1.1 -1.8 acid-resistance protein HdeD compare
ECOLIN_RS22300 -1.1 -4.3 nitrogen regulation protein NR(II) compare
ECOLIN_RS12855 -1.1 -1.2 heme exporter protein CcmB compare
ECOLIN_RS32935 -1.1 -1.0 hypothetical protein compare
ECOLIN_RS04370 -1.1 -1.3 ABC-F family ATPase compare
ECOLIN_RS12160 -1.1 -2.0 uridine kinase compare
ECOLIN_RS03700 -1.1 -1.0 fur leader peptide compare
ECOLIN_RS15630 -1.1 -1.2 L-fucose mutarotase compare
ECOLIN_RS13440 -1.1 -2.2 aspartate-semialdehyde dehydrogenase compare
ECOLIN_RS03755 -1.1 -1.6 two-component system sensor histidine kinase KdpD compare
ECOLIN_RS03770 -1.1 -1.0 potassium-transporting ATPase subunit KdpA compare
ECOLIN_RS16190 -1.1 -4.3 Xaa-Pro aminopeptidase compare
ECOLIN_RS07560 -1.1 -1.4 TonB system transport protein TonB compare
ECOLIN_RS09430 -1.0 -2.0 FAD-binding and (Fe-S)-binding domain-containing protein compare
ECOLIN_RS06290 -1.0 -1.4 23S rRNA accumulation protein YceD compare
ECOLIN_RS15420 -1.0 -1.3 FAD-dependent oxidoreductase compare
ECOLIN_RS14460 -1.0 -3.5 two-component system QseEF-associated lipoprotein QseG compare
ECOLIN_RS13370 -1.0 -1.6 TIGR01777 family oxidoreductase compare
ECOLIN_RS22295 -1.0 -3.4 nitrogen regulation protein NR(I) compare
ECOLIN_RS03945 -1.0 -1.1 peptidoglycan-associated lipoprotein Pal compare
ECOLIN_RS16290 -1.0 -1.3 sulfate/molybdate ABC transporter ATP-binding protein compare
ECOLIN_RS20680 -1.0 -4.6 glycosyltransferase compare
ECOLIN_RS13735 -1.0 -2.9 glucokinase compare
ECOLIN_RS20790 -1.0 -1.3 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
ECOLIN_RS07680 -1.0 -1.5 HTH-type transcriptional regulator CysB compare
ECOLIN_RS09525 -1.0 -1.1 3-deoxy-7-phosphoheptulonate synthase AroH compare
ECOLIN_RS21705 -1.0 -3.3 thioredoxin TrxA compare
ECOLIN_RS03230 -1.0 -1.0 iron-enterobactin ABC transporter ATP-binding protein compare
ECOLIN_RS14995 -1.0 -2.2 YqaA family protein compare
ECOLIN_RS13895 -1.0 -0.9 YfeK family protein compare
ECOLIN_RS25115 -1.0 -1.5 molecular chaperone OsmY compare
ECOLIN_RS13985 -1.0 -1.8 ethanolamine ammonia-lyase subunit beta compare
ECOLIN_RS04185 -0.9 -1.6 molybdopterin synthase catalytic subunit MoaE compare
ECOLIN_RS03355 -0.9 -2.3 citrate lyase holo-[acyl-carrier protein] synthase compare
ECOLIN_RS17275 -0.9 -2.5 DUF2623 family protein YghW compare
ECOLIN_RS15085 -0.9 -1.3 PTS glucitol/sorbitol transporter subunit IIA compare
ECOLIN_RS16430 -0.9 -1.2 XTP/dITP diphosphatase compare
ECOLIN_RS10710 -0.9 -1.8 NapC/NirT family cytochrome c compare
ECOLIN_RS21335 -0.9 -0.9 membrane protein insertion efficiency factor YidD compare
ECOLIN_RS19995 -0.9 -2.4 glutathione-disulfide reductase compare
ECOLIN_RS15615 -0.9 -0.8 L-fucose:H+ symporter permease compare
ECOLIN_RS02345 -0.9 -4.0 pyrroline-5-carboxylate reductase compare
ECOLIN_RS04930 -0.9 -1.6 nicotinate phosphoribosyltransferase compare
ECOLIN_RS06350 -0.9 -0.8 metal-dependent hydrolase compare
ECOLIN_RS16285 -0.9 -1.5 energy-coupling factor ABC transporter ATP-binding protein compare
ECOLIN_RS03735 -0.9 -0.9 putrescine-ornithine antiporter compare
ECOLIN_RS00105 -0.9 -3.8 Na+/H+ antiporter NhaA compare
ECOLIN_RS17500 -0.9 -1.1 3',5'-cyclic-AMP phosphodiesterase compare
ECOLIN_RS03835 -0.9 -1.7 citrate synthase compare
ECOLIN_RS00360 -0.9 -1.3 thiamine ABC transporter ATP-binding protein ThiQ compare
ECOLIN_RS24670 -0.8 -1.6 ribonuclease E inhibitor RraB compare
ECOLIN_RS07035 -0.8 -1.1 blue light-responsive regulator BluF compare
ECOLIN_RS02625 -0.8 -1.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ECOLIN_RS05125 -0.8 -0.8 hydrogenase 1 maturation protease compare
ECOLIN_RS11985 -0.8 -1.2 UDP-glucose 6-dehydrogenase compare
ECOLIN_RS31255 -0.8 -1.5 DUF2754 domain-containing protein compare
ECOLIN_RS13430 -0.8 -2.2 DedA family protein compare
ECOLIN_RS24545 -0.8 -1.6 galactofuranose ABC transporter, ATP-binding protein YtfT compare
ECOLIN_RS04350 -0.8 -2.6 manganase accumulation protein MntS compare
ECOLIN_RS22645 -0.8 -4.0 cell division protein FtsN compare
ECOLIN_RS19555 -0.8 -3.7 glycerol-3-phosphate dehydrogenase compare
ECOLIN_RS03550 -0.8 -1.6 PhoH family protein compare
ECOLIN_RS04430 -0.8 -1.3 EAL domain-containing protein compare
ECOLIN_RS02355 -0.8 -1.9 shikimate kinase AroL compare
ECOLIN_RS11545 -0.8 -1.6 colibactin non-ribosomal peptide synthetase ClbJ compare
ECOLIN_RS17565 -0.8 -1.6 fimbrial-like protein compare
ECOLIN_RS19835 -0.8 -2.2 Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA compare
ECOLIN_RS05815 -0.8 -1.3 DUF4198 domain-containing protein compare
ECOLIN_RS03620 -0.8 -0.9 glucosamine-6-phosphate deaminase compare
ECOLIN_RS06390 -0.8 -1.3 beta-N-acetylhexosaminidase compare
ECOLIN_RS25685 -0.8 -1.0 hypothetical protein compare
ECOLIN_RS11990 -0.8 -0.9 NADP-dependent phosphogluconate dehydrogenase compare
ECOLIN_RS14580 -0.8 -3.5 ATP-dependent RNA helicase SrmB compare
ECOLIN_RS14835 -0.8 -2.2 L-2-hydroxyglutarate oxidase compare
ECOLIN_RS17395 -0.8 -0.8 cell division protein FtsP compare
ECOLIN_RS04155 -0.8 -1.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK compare
ECOLIN_RS31275 -0.8 -1.2 hypothetical protein compare
ECOLIN_RS12310 -0.8 -2.0 nucleoside permease compare
ECOLIN_RS32735 -0.8 -2.2 hypothetical protein compare
ECOLIN_RS20750 -0.7 -0.8 orotate phosphoribosyltransferase compare
ECOLIN_RS21195 -0.7 -1.2 radical SAM protein compare
ECOLIN_RS17450 -0.7 -2.5 NADPH:quinone oxidoreductase MdaB compare
ECOLIN_RS21345 -0.7 -1.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ECOLIN_RS14960 -0.7 -1.3 multidrug efflux transporter EmrAB transcriptional repressor EmrR compare
ECOLIN_RS09650 -0.7 -1.6 cystine/sulfocysteine:cation symporter compare
ECOLIN_RS13530 -0.7 -1.4 fimbria/pilus periplasmic chaperone compare


Specific Phenotypes

None in this experiment

For Escherichia coli Nissle 1917 in phage experiments

For phage MOI 10 across organisms