Experiment set1S470 for Parabacteroides merdae CL09T00C40

Compare to:

Yeast Extract 1 x carbon source

200 most detrimental genes:

  gene name fitness t score description  
HMPREF1078_RS18120 +1.8 15.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
HMPREF1078_RS10020 +1.8 11.7 OadG family transporter subunit compare
HMPREF1078_RS10475 +1.8 16.3 glycosyltransferase family 4 protein compare
HMPREF1078_RS10015 +1.7 16.2 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS10030 +1.7 14.3 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1078_RS10465 +1.6 12.9 hypothetical protein compare
HMPREF1078_RS18155 +1.5 11.9 S1-like domain-containing RNA-binding protein compare
HMPREF1078_RS10025 +1.5 9.9 biotin/lipoyl-binding protein compare
HMPREF1078_RS00195 +1.5 13.1 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1078_RS18110 +1.3 10.1 hypothetical protein compare
HMPREF1078_RS00795 +1.2 9.4 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS16525 +1.1 2.0 tRNA-Pro compare
HMPREF1078_RS02570 +1.1 6.8 LytTR family DNA-binding domain-containing protein compare
HMPREF1078_RS00070 +1.1 7.8 glycosyltransferase compare
HMPREF1078_RS04670 +1.0 9.9 DUF6383 domain-containing protein compare
HMPREF1078_RS10470 +1.0 7.1 glycosyltransferase compare
HMPREF1078_RS18905 +1.0 3.9 diacylglycerol kinase family protein compare
HMPREF1078_RS09020 +0.9 1.6 DUF4134 domain-containing protein compare
HMPREF1078_RS09275 +0.9 0.9 DUF3408 domain-containing protein compare
HMPREF1078_RS14600 +0.9 1.4 tRNA-Gly compare
HMPREF1078_RS19665 +0.8 1.5 helix-turn-helix domain-containing protein compare
HMPREF1078_RS18895 +0.8 1.5 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1078_RS10990 +0.8 1.5 VOC family protein compare
HMPREF1078_RS12905 +0.7 2.9 transposase compare
HMPREF1078_RS07700 +0.7 4.5 chloride channel protein compare
HMPREF1078_RS01385 +0.7 1.5 LemA family protein compare
HMPREF1078_RS11965 +0.7 3.3 ribosome assembly cofactor RimP compare
HMPREF1078_RS13005 +0.7 2.5 Trk system potassium transporter TrkA compare
HMPREF1078_RS11220 +0.7 2.9 DUF1343 domain-containing protein compare
HMPREF1078_RS16545 +0.7 1.8 MaoC family dehydratase compare
HMPREF1078_RS03820 +0.7 1.7 helix-turn-helix domain-containing protein compare
HMPREF1078_RS01320 +0.6 1.7 GlsB/YeaQ/YmgE family stress response membrane protein compare
HMPREF1078_RS12640 +0.6 2.2 RluA family pseudouridine synthase compare
HMPREF1078_RS12690 +0.6 2.8 NVEALA domain-containing protein compare
HMPREF1078_RS19280 +0.6 1.7 hypothetical protein compare
HMPREF1078_RS04455 +0.6 1.7 hypothetical protein compare
HMPREF1078_RS03060 +0.6 2.4 hypothetical protein compare
HMPREF1078_RS12775 +0.6 1.0 exodeoxyribonuclease VII small subunit compare
HMPREF1078_RS10800 +0.6 4.4 AraC family transcriptional regulator compare
HMPREF1078_RS04475 +0.6 1.9 glucosaminidase domain-containing protein compare
HMPREF1078_RS05905 +0.6 2.3 Na/Pi cotransporter family protein compare
HMPREF1078_RS08760 +0.6 0.8 tRNA-Lys compare
HMPREF1078_RS19465 +0.6 1.5 hypothetical protein compare
HMPREF1078_RS06250 +0.6 1.8 DNA alkylation repair protein compare
HMPREF1078_RS07530 +0.6 1.9 glycyl-radical enzyme activating protein compare
HMPREF1078_RS09325 +0.6 1.1 conjugative transposon protein TraK compare
HMPREF1078_RS14165 +0.6 1.9 Rne/Rng family ribonuclease compare
HMPREF1078_RS14240 +0.6 1.5 thioredoxin domain-containing protein compare
HMPREF1078_RS02700 +0.6 2.2 polysaccharide biosynthesis/export family protein compare
HMPREF1078_RS19860 +0.6 0.6 hypothetical protein compare
HMPREF1078_RS19745 +0.5 1.6 aldo/keto reductase compare
HMPREF1078_RS09080 +0.5 1.0 DUF3872 domain-containing protein compare
HMPREF1078_RS16765 +0.5 1.9 hypothetical protein compare
HMPREF1078_RS11570 +0.5 1.0 Mrp/NBP35 family ATP-binding protein compare
HMPREF1078_RS02835 +0.5 2.5 hypothetical protein compare
HMPREF1078_RS03350 +0.5 1.3 DUF4134 domain-containing protein compare
HMPREF1078_RS15625 +0.5 1.7 toxin-antitoxin system YwqK family antitoxin compare
HMPREF1078_RS06530 +0.5 3.0 radical SAM protein compare
HMPREF1078_RS03210 +0.5 1.8 hypothetical protein compare
HMPREF1078_RS12650 +0.5 2.0 O-antigen ligase family protein compare
HMPREF1078_RS13165 +0.5 3.4 RNA polymerase sigma factor compare
HMPREF1078_RS14285 +0.5 3.0 IMP dehydrogenase compare
HMPREF1078_RS06935 +0.5 2.2 LytTR family DNA-binding domain-containing protein compare
HMPREF1078_RS18325 +0.5 0.7 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS14205 +0.5 1.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE compare
HMPREF1078_RS19895 +0.5 1.7 SGNH/GDSL hydrolase family protein compare
HMPREF1078_RS19720 +0.5 1.5 hypothetical protein compare
HMPREF1078_RS15675 +0.5 2.3 SDR family oxidoreductase compare
HMPREF1078_RS08315 +0.5 0.7 DUF3408 domain-containing protein compare
HMPREF1078_RS07525 +0.5 2.5 aspartate-alanine antiporter compare
HMPREF1078_RS08905 +0.5 1.8 hypothetical protein compare
HMPREF1078_RS07980 +0.5 0.6 VOC family protein compare
HMPREF1078_RS01395 +0.4 1.5 DUF6078 family protein compare
HMPREF1078_RS10635 +0.4 1.4 ferredoxin compare
HMPREF1078_RS17725 +0.4 2.4 transcription elongation factor GreA compare
HMPREF1078_RS00410 +0.4 0.9 ABC transporter ATP-binding protein compare
HMPREF1078_RS00790 +0.4 3.9 outer membrane protein transport protein compare
HMPREF1078_RS07605 +0.4 2.4 GNAT family N-acetyltransferase compare
HMPREF1078_RS03130 +0.4 1.7 SLOG family protein compare
HMPREF1078_RS06545 +0.4 3.5 DUF4294 domain-containing protein compare
HMPREF1078_RS02785 +0.4 1.3 site-specific integrase compare
HMPREF1078_RS12415 +0.4 0.7 O-antigen ligase family protein compare
HMPREF1078_RS09415 +0.4 1.5 hypothetical protein compare
HMPREF1078_RS09290 +0.4 0.6 DUF4134 domain-containing protein compare
HMPREF1078_RS03725 +0.4 1.3 flavodoxin family protein compare
HMPREF1078_RS14015 +0.4 2.5 PepSY-associated TM helix domain-containing protein compare
HMPREF1078_RS10725 +0.4 2.1 DUF6383 domain-containing protein compare
HMPREF1078_RS06860 +0.4 1.4 arsenate reductase ArsC compare
HMPREF1078_RS04755 +0.4 2.1 hypothetical protein compare
HMPREF1078_RS19730 +0.4 0.5 hypothetical protein compare
HMPREF1078_RS15245 +0.4 2.2 DUF4290 domain-containing protein compare
HMPREF1078_RS02555 +0.4 2.9 FHA domain-containing protein compare
HMPREF1078_RS00635 +0.4 2.3 sugar phosphate isomerase/epimerase family protein compare
HMPREF1078_RS09510 +0.4 2.1 histidinol-phosphatase compare
HMPREF1078_RS17155 +0.4 2.1 gluconate 5-dehydrogenase compare
HMPREF1078_RS04585 +0.4 1.2 SprT family zinc-dependent metalloprotease compare
HMPREF1078_RS09560 +0.4 1.5 glycoside hydrolase family 88 protein compare
HMPREF1078_RS17525 +0.4 1.7 hypothetical protein compare
HMPREF1078_RS08920 +0.4 1.1 helix-turn-helix domain-containing protein compare
HMPREF1078_RS02565 +0.4 2.0 FHA domain-containing protein compare
HMPREF1078_RS10735 +0.4 3.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase compare
HMPREF1078_RS02345 +0.4 1.3 ATP-binding protein compare
HMPREF1078_RS15690 +0.4 2.2 response regulator transcription factor compare
HMPREF1078_RS13110 +0.4 0.5 gamma carbonic anhydrase family protein compare
HMPREF1078_RS04870 +0.4 2.5 aminoacyl-histidine dipeptidase compare
HMPREF1078_RS05475 +0.4 2.0 TolC family protein compare
HMPREF1078_RS15190 +0.4 2.0 RNA polymerase sigma-70 factor compare
HMPREF1078_RS05820 +0.4 2.3 RNA polymerase sigma-70 factor compare
HMPREF1078_RS04770 +0.4 1.5 MmcQ/YjbR family DNA-binding protein compare
HMPREF1078_RS00785 +0.4 3.2 hypothetical protein compare
HMPREF1078_RS00770 +0.4 1.3 RNA polymerase sigma-70 factor compare
HMPREF1078_RS16290 +0.4 1.5 JAB domain-containing protein compare
HMPREF1078_RS18195 +0.4 1.6 hypothetical protein compare
HMPREF1078_RS09695 +0.4 0.6 HigA family addiction module antitoxin compare
HMPREF1078_RS14215 +0.4 0.9 PhoH family protein compare
HMPREF1078_RS01930 +0.4 1.0 flavodoxin compare
HMPREF1078_RS02430 +0.4 1.7 lipocalin-like domain-containing protein compare
HMPREF1078_RS07590 +0.4 0.5 tRNA-Asp compare
HMPREF1078_RS12830 +0.4 1.8 3'-5' exonuclease compare
HMPREF1078_RS17060 +0.4 1.9 RNA-binding protein compare
HMPREF1078_RS01215 +0.4 1.5 hypothetical protein compare
HMPREF1078_RS04270 +0.4 2.4 hemerythrin domain-containing protein compare
HMPREF1078_RS15030 +0.3 2.2 response regulator transcription factor compare
HMPREF1078_RS09040 +0.3 1.3 DUF4141 domain-containing protein compare
HMPREF1078_RS13515 +0.3 1.2 methylated-DNA--[protein]-cysteine S-methyltransferase compare
HMPREF1078_RS19885 +0.3 1.8 hypothetical protein compare
HMPREF1078_RS02330 +0.3 1.6 DUF6078 family protein compare
HMPREF1078_RS18810 +0.3 1.7 hypothetical protein compare
HMPREF1078_RS07985 +0.3 0.8 ClbS/DfsB family four-helix bundle protein compare
HMPREF1078_RS06060 +0.3 0.7 mandelate racemase/muconate lactonizing enzyme family protein compare
HMPREF1078_RS06850 +0.3 2.2 hypothetical protein compare
HMPREF1078_RS08305 +0.3 0.5 relaxase/mobilization nuclease domain-containing protein compare
HMPREF1078_RS15145 +0.3 1.8 hypothetical protein compare
HMPREF1078_RS07075 +0.3 1.9 ribonuclease III compare
HMPREF1078_RS04265 +0.3 2.0 Rid family hydrolase compare
HMPREF1078_RS08655 +0.3 1.0 pyridoxamine 5'-phosphate oxidase family protein compare
HMPREF1078_RS02545 +0.3 2.4 serine/threonine-protein kinase compare
HMPREF1078_RS10935 +0.3 2.2 discoidin domain-containing protein compare
HMPREF1078_RS17970 +0.3 0.9 hypothetical protein compare
HMPREF1078_RS04055 +0.3 2.5 DUF4466 family protein compare
HMPREF1078_RS14585 +0.3 0.9 DUF4491 family protein compare
HMPREF1078_RS13845 +0.3 1.6 DUF3987 domain-containing protein compare
HMPREF1078_RS12140 +0.3 1.7 sigma-54 dependent transcriptional regulator compare
HMPREF1078_RS12500 +0.3 2.1 F0F1 ATP synthase subunit A compare
HMPREF1078_RS09110 +0.3 1.7 PcfJ domain-containing protein compare
HMPREF1078_RS15565 +0.3 2.2 N-acetylglucosamine-6-phosphate deacetylase compare
HMPREF1078_RS02605 +0.3 1.2 Arm DNA-binding domain-containing protein compare
HMPREF1078_RS12035 +0.3 1.6 FimB/Mfa2 family fimbrial subunit compare
HMPREF1078_RS05840 +0.3 1.9 lipopolysaccharide biosynthesis protein compare
HMPREF1078_RS04780 +0.3 1.4 hypothetical protein compare
HMPREF1078_RS19355 +0.3 0.5 hypothetical protein compare
HMPREF1078_RS19795 +0.3 1.0 hypothetical protein compare
HMPREF1078_RS19975 +0.3 1.1 GNAT family N-acetyltransferase compare
HMPREF1078_RS03005 +0.3 0.7 hypothetical protein compare
HMPREF1078_RS13775 +0.3 2.1 response regulator compare
HMPREF1078_RS16760 +0.3 2.0 DUF4837 family protein compare
HMPREF1078_RS12395 +0.3 0.7 NVEALA domain-containing protein compare
HMPREF1078_RS13925 +0.3 1.1 DMT family protein compare
HMPREF1078_RS10365 +0.3 1.3 fructose-bisphosphatase class III compare
HMPREF1078_RS19695 +0.3 1.4 hypothetical protein compare
HMPREF1078_RS12445 +0.3 1.8 heparinase II/III family protein compare
HMPREF1078_RS16740 +0.3 1.8 rRNA cytosine-C5-methyltransferase compare
HMPREF1078_RS06415 +0.3 1.1 RNA polymerase sigma factor compare
HMPREF1078_RS19570 +0.3 0.5 hypothetical protein compare
HMPREF1078_RS07255 +0.3 1.3 HU family DNA-binding protein compare
HMPREF1078_RS14545 +0.3 1.6 adenylyltransferase/cytidyltransferase family protein compare
HMPREF1078_RS15225 +0.3 1.5 DUF3823 domain-containing protein compare
HMPREF1078_RS18315 +0.3 0.6 helix-turn-helix domain-containing protein compare
HMPREF1078_RS15645 +0.3 1.5 EFR1 family ferrodoxin compare
HMPREF1078_RS13390 +0.3 1.4 protoporphyrinogen oxidase compare
HMPREF1078_RS03390 +0.3 1.3 hypothetical protein compare
HMPREF1078_RS03595 +0.3 1.6 GDSL-type esterase/lipase family protein compare
HMPREF1078_RS05575 +0.3 1.3 RNA polymerase sigma-70 factor compare
HMPREF1078_RS06945 +0.3 0.8 DUF3037 domain-containing protein compare
HMPREF1078_RS05150 +0.3 0.7 Fic family protein compare
HMPREF1078_RS08550 +0.3 1.1 DUF456 domain-containing protein compare
HMPREF1078_RS20055 +0.3 0.4 hypothetical protein compare
HMPREF1078_RS01680 +0.3 1.7 patatin family protein compare
HMPREF1078_RS08425 +0.3 2.0 efflux RND transporter permease subunit compare
HMPREF1078_RS09945 +0.3 0.4 tRNA-Ser compare
HMPREF1078_RS00845 +0.3 1.4 YigZ family protein compare
HMPREF1078_RS09255 +0.3 1.0 conjugal transfer protein MobB compare
HMPREF1078_RS19830 +0.3 1.3 DUF86 domain-containing protein compare
HMPREF1078_RS15370 +0.3 1.8 carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1078_RS11480 +0.3 2.3 TonB-dependent receptor compare
HMPREF1078_RS00480 +0.3 1.5 exodeoxyribonuclease III compare
HMPREF1078_RS13920 +0.3 1.0 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
HMPREF1078_RS05695 +0.3 0.8 transcriptional repressor compare
HMPREF1078_RS01615 +0.3 1.5 DnaB-like helicase C-terminal domain-containing protein compare
HMPREF1078_RS13055 +0.3 1.8 low molecular weight protein-tyrosine-phosphatase compare
HMPREF1078_RS14595 +0.3 1.3 hypothetical protein compare
HMPREF1078_RS15295 +0.3 1.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1078_RS13690 +0.3 1.4 3'-5' exonuclease compare
HMPREF1078_RS13615 +0.3 2.1 RNA polymerase sigma factor compare
HMPREF1078_RS11575 +0.3 1.5 histidine ammonia-lyase compare
HMPREF1078_RS03135 +0.3 1.0 hypothetical protein compare
HMPREF1078_RS17045 +0.3 2.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
HMPREF1078_RS05370 +0.3 1.2 BlaI/MecI/CopY family transcriptional regulator compare
HMPREF1078_RS16665 +0.3 1.8 2-isopropylmalate synthase compare
HMPREF1078_RS02640 +0.3 1.6 acyltransferase compare


Specific Phenotypes

None in this experiment

For Parabacteroides merdae CL09T00C40 in carbon source complex media experiments

For carbon source complex media Yeast Extract across organisms