Experiment set1S462 for Parabacteroides merdae CL09T00C40
Sucrose 10 mg/mL carbon source
Group: carbon sourceMedia: Varel_Bryant_medium + Sucrose (10 mg/mL)
Culturing: Pmerdae_CL09T00C40_ML3, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya on 1/10/25
Media components: 15 uM Hemin, 134 uM L-Methionine, 15 uM Iron (II) sulfate heptahydrate, 8.25 mM L-Cysteine, 23.8 mM Sodium bicarbonate, Mineral 3B solution (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 9.3 mM Ammonium chloride, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 16 genes in this experiment
For carbon source Sucrose in Parabacteroides merdae CL09T00C40
For carbon source Sucrose across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA structural proteins, bacterial | 1 |
| De Novo Purine Biosynthesis | 1 |
| Maltose and Maltodextrin Utilization | 1 |
| Predicted carbohydrate hydrolases | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: