Experiment set1S458 for Parabacteroides merdae CL09T00C40

Compare to:

D-Galactose 10 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS05835 -6.8 -4.7 M20 family metallo-hydrolase compare
HMPREF1078_RS13570 -6.8 -8.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1078_RS10390 -6.7 -4.6 cofactor-independent phosphoglycerate mutase compare
HMPREF1078_RS13575 -6.5 -11.7 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1078_RS05935 -6.4 -4.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS10580 -6.4 -11.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1078_RS10620 -6.2 -9.4 pyrroline-5-carboxylate reductase compare
HMPREF1078_RS10660 -6.2 -11.1 acetylornithine carbamoyltransferase compare
HMPREF1078_RS10385 -6.1 -9.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1078_RS10575 -6.1 -10.9 argininosuccinate synthase compare
HMPREF1078_RS16655 -6.0 -4.1 3-isopropylmalate dehydratase small subunit compare
HMPREF1078_RS13560 -6.0 -5.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1078_RS11315 -5.9 -15.3 argininosuccinate lyase compare
HMPREF1078_RS10395 -5.9 -11.3 threonine synthase compare
HMPREF1078_RS01120 -5.9 -13.7 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
HMPREF1078_RS12080 -5.8 -13.6 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS10655 -5.8 -8.9 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1078_RS10650 -5.8 -8.9 glutamate 5-kinase compare
HMPREF1078_RS10570 -5.8 -10.4 GNAT family N-acetyltransferase compare
HMPREF1078_RS11820 -5.8 -5.6 M28 family peptidase compare
HMPREF1078_RS15400 -5.8 -18.5 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS15405 -5.8 -8.8 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS13565 -5.7 -11.4 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1078_RS01125 -5.7 -11.6 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1078_RS12535 -5.7 -3.9 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1078_RS16660 -5.7 -13.3 3-isopropylmalate dehydratase large subunit compare
HMPREF1078_RS16640 -5.7 -17.2 3-isopropylmalate dehydrogenase compare
HMPREF1078_RS00130 -5.6 -7.7 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1078_RS02445 -5.6 -6.7 histidinol-phosphate transaminase compare
HMPREF1078_RS02450 -5.6 -11.3 histidinol dehydrogenase compare
HMPREF1078_RS04710 -5.5 -12.3 DUF4954 family protein compare
HMPREF1078_RS00120 -5.4 -11.1 tryptophan synthase subunit alpha compare
HMPREF1078_RS04700 -5.4 -9.1 type II 3-dehydroquinate dehydratase compare
HMPREF1078_RS16690 -5.4 -12.1 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1078_RS00145 -5.4 -14.0 anthranilate synthase component I family protein compare
HMPREF1078_RS00135 -5.4 -10.4 anthranilate phosphoribosyltransferase compare
HMPREF1078_RS17540 -5.4 -7.4 glycosyltransferase family 2 protein compare
HMPREF1078_RS12530 -5.4 -8.3 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1078_RS00150 -5.3 -14.5 tryptophan synthase subunit beta compare
HMPREF1078_RS02440 -5.2 -8.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1078_RS01135 -5.2 -10.0 prephenate dehydratase compare
HMPREF1078_RS04325 -5.2 -23.1 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS07215 -5.1 -12.3 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1078_RS11005 -5.0 -18.6 tetratricopeptide repeat protein compare
HMPREF1078_RS08715 -5.0 -8.4 galactokinase compare
HMPREF1078_RS16675 -5.0 -10.6 ketol-acid reductoisomerase compare
HMPREF1078_RS06740 -5.0 -17.2 DUF4271 domain-containing protein compare
HMPREF1078_RS14700 -5.0 -18.5 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS13995 -5.0 -20.8 hypothetical protein compare
HMPREF1078_RS13545 -5.0 -14.7 diaminopimelate decarboxylase compare
HMPREF1078_RS01130 -5.0 -16.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1078_RS13530 -4.9 -13.9 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS09885 -4.9 -11.0 alpha amylase C-terminal domain-containing protein compare
HMPREF1078_RS15845 -4.9 -8.8 copper homeostasis protein CutC compare
HMPREF1078_RS07755 -4.9 -4.8 outer membrane protein assembly factor BamD compare
HMPREF1078_RS14200 -4.9 -4.7 shikimate dehydrogenase compare
HMPREF1078_RS11010 -4.9 -11.8 hypothetical protein compare
HMPREF1078_RS04370 -4.8 -3.0 30S ribosomal protein S1 compare
HMPREF1078_RS13915 -4.8 -9.3 tetratricopeptide repeat protein compare
HMPREF1078_RS07220 -4.8 -12.5 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS05280 -4.8 -5.5 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS15315 -4.8 -11.6 DUF4831 family protein compare
HMPREF1078_RS04485 -4.8 -8.8 T9SS type A sorting domain-containing protein compare
HMPREF1078_RS16160 -4.8 -13.8 gliding motility lipoprotein GldH compare
HMPREF1078_RS04820 -4.7 -3.2 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS05545 -4.7 -10.9 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS16665 -4.7 -14.3 2-isopropylmalate synthase compare
HMPREF1078_RS02455 -4.6 -10.4 ATP phosphoribosyltransferase compare
HMPREF1078_RS14285 -4.6 -4.5 IMP dehydrogenase compare
HMPREF1078_RS04555 -4.6 -12.2 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS00220 -4.6 -25.4 tetratricopeptide repeat protein compare
HMPREF1078_RS06560 -4.6 -23.4 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS04840 -4.5 -13.7 type IX secretion system sortase PorU compare
HMPREF1078_RS10280 -4.5 -3.1 energy transducer TonB compare
HMPREF1078_RS10745 -4.5 -14.7 MlaD family protein compare
HMPREF1078_RS10585 -4.5 -13.1 aspartate aminotransferase family protein compare
HMPREF1078_RS06805 -4.4 -16.2 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS00125 -4.4 -8.1 phosphoribosylanthranilate isomerase compare
HMPREF1078_RS11090 -4.4 -6.0 6-phosphofructokinase compare
HMPREF1078_RS09965 -4.4 -10.2 SPOR domain-containing protein compare
HMPREF1078_RS12115 -4.4 -8.9 thioredoxin compare
HMPREF1078_RS10645 -4.4 -11.3 AMP-binding protein compare
HMPREF1078_RS16695 -4.4 -9.4 dihydroxy-acid dehydratase compare
HMPREF1078_RS10270 -4.4 -3.0 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1078_RS07705 -4.3 -11.5 sugar transferase compare
HMPREF1078_RS01865 -4.3 -4.2 tetratricopeptide repeat protein compare
HMPREF1078_RS07205 -4.3 -5.5 shikimate kinase compare
HMPREF1078_RS16685 -4.3 -9.5 acetolactate synthase small subunit compare
HMPREF1078_RS16650 -4.3 -14.6 alpha-isopropylmalate synthase regulatory domain-containing protein compare
HMPREF1078_RS15335 -4.2 -9.7 acetylglutamate kinase compare
HMPREF1078_RS05845 -4.2 -9.9 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1078_RS10005 -4.2 -8.0 TonB-dependent receptor compare
HMPREF1078_RS16595 -4.1 -14.3 HD domain-containing protein compare
HMPREF1078_RS05870 -4.1 -6.3 PglZ domain-containing protein compare
HMPREF1078_RS05505 -4.1 -3.9 gliding motility protein GldL compare
HMPREF1078_RS17485 -4.0 -23.8 glycosyl transferase compare
HMPREF1078_RS09775 -4.0 -18.1 translocation/assembly module TamB compare
HMPREF1078_RS17495 -4.0 -25.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS17075 -3.9 -10.9 ABC transporter permease compare
HMPREF1078_RS14685 -3.8 -10.7 aspartate 1-decarboxylase compare
HMPREF1078_RS16710 -3.8 -4.5 chorismate synthase compare
HMPREF1078_RS05510 -3.8 -3.7 gliding motility protein GldM compare
HMPREF1078_RS00925 -3.8 -11.2 UpxY family transcription antiterminator compare
HMPREF1078_RS11105 -3.8 -7.2 type IX secretion system protein PorQ compare
HMPREF1078_RS07885 -3.7 -10.2 hypothetical protein compare
HMPREF1078_RS04660 -3.7 -1.8 FtsL-like putative cell division protein compare
HMPREF1078_RS13175 -3.7 -2.5 hypothetical protein compare
HMPREF1078_RS13185 -3.7 -5.0 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS05920 -3.7 -2.5 RNA polymerase factor sigma-54 compare
HMPREF1078_RS02390 -3.7 -10.3 tetratricopeptide repeat protein compare
HMPREF1078_RS10275 -3.6 -3.5 biopolymer transporter ExbD compare
HMPREF1078_RS06745 -3.6 -4.2 uroporphyrinogen-III synthase compare
HMPREF1078_RS16730 -3.6 -6.8 acyltransferase compare
HMPREF1078_RS05515 -3.5 -6.4 gliding motility protein GldN compare
HMPREF1078_RS00090 -3.5 -12.3 GNAT family N-acetyltransferase compare
HMPREF1078_RS17490 -3.5 -17.9 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS05500 -3.5 -6.3 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS07610 -3.5 -9.2 glycosyltransferase family 2 protein compare
HMPREF1078_RS05495 -3.5 -4.8 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS10030 -3.5 -19.2 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1078_RS16645 -3.5 -5.7 methylglyoxal synthase compare
HMPREF1078_RS11260 -3.4 -4.1 OmpH family outer membrane protein compare
HMPREF1078_RS14995 -3.4 -13.2 BamA/TamA family outer membrane protein compare
HMPREF1078_RS06810 -3.4 -13.0 hypothetical protein compare
HMPREF1078_RS10015 -3.4 -21.4 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS07320 -3.4 -13.1 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS07165 -3.3 -2.3 glycosyltransferase family 9 protein compare
HMPREF1078_RS10565 -3.3 -7.4 arginine repressor compare
HMPREF1078_RS00075 -3.3 -10.2 glycosyltransferase compare
HMPREF1078_RS11310 -3.3 -5.5 polyketide cyclase compare
HMPREF1078_RS03090 -3.3 -9.6 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS10020 -3.3 -15.9 OadG family transporter subunit compare
HMPREF1078_RS13555 -3.3 -7.0 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS13020 -3.3 -10.8 cell surface protein SprA compare
HMPREF1078_RS17080 -3.2 -8.3 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS11275 -3.2 -3.1 DUF6089 family protein compare
HMPREF1078_RS15460 -3.1 -8.7 DUF3078 domain-containing protein compare
HMPREF1078_RS11320 -3.1 -10.0 hypothetical protein compare
HMPREF1078_RS06530 -3.1 -7.8 radical SAM protein compare
HMPREF1078_RS17480 -3.1 -18.3 glycosyltransferase compare
HMPREF1078_RS16790 -3.0 -5.0 S9 family peptidase compare
HMPREF1078_RS07160 -3.0 -3.6 DUF4254 domain-containing protein compare
HMPREF1078_RS05620 -3.0 -13.6 tetratricopeptide repeat protein compare
HMPREF1078_RS16875 -3.0 -9.7 type I methionyl aminopeptidase compare
HMPREF1078_RS00795 -3.0 -10.4 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS10025 -2.9 -8.3 biotin/lipoyl-binding protein compare
HMPREF1078_RS17255 -2.9 -12.4 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS00215 -2.9 -2.0 biotin/lipoyl-binding protein compare
HMPREF1078_RS05885 -2.9 -4.8 ribonuclease R compare
HMPREF1078_RS07315 -2.9 -11.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS14640 -2.9 -2.8 S41 family peptidase compare
HMPREF1078_RS00085 -2.9 -9.0 PIG-L family deacetylase compare
HMPREF1078_RS10265 -2.8 -8.6 pyridoxine 5'-phosphate synthase compare
HMPREF1078_RS15280 -2.8 -4.0 malonyl-ACP O-methyltransferase BioC compare
HMPREF1078_RS17125 -2.8 -12.9 permease-like cell division protein FtsX compare
HMPREF1078_RS15270 -2.8 -11.8 RIP metalloprotease RseP compare
HMPREF1078_RS16620 -2.8 -10.5 hypothetical protein compare
HMPREF1078_RS17685 -2.7 -1.3 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1078_RS13110 -2.7 -2.3 gamma carbonic anhydrase family protein compare
HMPREF1078_RS14210 -2.7 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1078_RS13050 -2.7 -3.7 primosomal protein N' compare
HMPREF1078_RS14615 -2.7 -2.6 tetratricopeptide repeat protein compare
HMPREF1078_RS17050 -2.7 -6.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1078_RS09055 -2.7 -2.1 TraL conjugative transposon family protein compare
HMPREF1078_RS13270 -2.7 -6.2 ATP-binding protein compare
HMPREF1078_RS04805 -2.7 -7.0 UvrD-helicase domain-containing protein compare
HMPREF1078_RS00080 -2.7 -13.0 polysaccharide deacetylase family protein compare
HMPREF1078_RS00505 -2.6 -1.8 RecQ family ATP-dependent DNA helicase compare
HMPREF1078_RS04415 -2.6 -6.0 DUF3127 domain-containing protein compare
HMPREF1078_RS10160 -2.6 -4.4 OmpA family protein compare
HMPREF1078_RS13970 -2.6 -7.3 glucosaminidase domain-containing protein compare
HMPREF1078_RS01625 -2.6 -1.6 DUF4248 domain-containing protein compare
HMPREF1078_RS01830 -2.6 -1.8 MoxR family ATPase compare
HMPREF1078_RS17145 -2.6 -1.7 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1078_RS00190 -2.6 -9.4 OmpA family protein compare
HMPREF1078_RS16215 -2.5 -9.2 preprotein translocase subunit YajC compare
HMPREF1078_RS09490 -2.5 -1.8 PD-(D/E)XK nuclease family protein compare
HMPREF1078_RS07175 -2.5 -5.0 lipopolysaccharide kinase InaA family protein compare
HMPREF1078_RS04785 -2.5 -8.1 nucleoside deaminase compare
HMPREF1078_RS14505 -2.5 -14.4 hypothetical protein compare
HMPREF1078_RS16230 -2.5 -5.5 porin family protein compare
HMPREF1078_RS15275 -2.5 -6.6 dethiobiotin synthase compare
HMPREF1078_RS00210 -2.4 -3.7 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS11615 -2.4 -12.0 endonuclease/exonuclease/phosphatase family protein compare
HMPREF1078_RS07895 -2.4 -6.0 molecular chaperone DnaJ compare
HMPREF1078_RS17650 -2.4 -3.7 hypothetical protein compare
HMPREF1078_RS14525 -2.4 -3.3 SurA N-terminal domain-containing protein compare
HMPREF1078_RS17725 -2.4 -7.5 transcription elongation factor GreA compare
HMPREF1078_RS16175 -2.4 -4.1 diacylglycerol kinase family lipid kinase compare
HMPREF1078_RS10750 -2.4 -11.1 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1078_RS15285 -2.4 -7.6 DUF452 family protein compare
HMPREF1078_RS01860 -2.3 -1.6 BatD family protein compare
HMPREF1078_RS15295 -2.3 -7.2 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1078_RS00025 -2.3 -8.2 Rossmann-like and DUF2520 domain-containing protein compare
HMPREF1078_RS12525 -2.3 -6.7 F0F1 ATP synthase subunit gamma compare
HMPREF1078_RS14945 -2.3 -6.9 DUF1282 family protein compare
HMPREF1078_RS12760 -2.3 -12.0 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1078_RS11620 -2.3 -10.1 rhomboid family intramembrane serine protease compare
HMPREF1078_RS07605 -2.3 -6.4 GNAT family N-acetyltransferase compare
HMPREF1078_RS07855 -2.3 -1.5 branched-chain amino acid aminotransferase compare


Specific Phenotypes

None in this experiment

For Parabacteroides merdae CL09T00C40 in carbon source experiments

For carbon source D-Galactose across organisms