Experiment set1S433 for Parabacteroides merdae CL09T00C40

Compare to:

Dextrin from potato starch 2.5 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS16655 -5.2 -3.1 3-isopropylmalate dehydratase small subunit compare
HMPREF1078_RS10620 -4.7 -9.5 pyrroline-5-carboxylate reductase compare
HMPREF1078_RS00125 -4.6 -8.2 phosphoribosylanthranilate isomerase compare
HMPREF1078_RS10650 -4.4 -8.5 glutamate 5-kinase compare
HMPREF1078_RS07780 -4.3 -4.0 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS04700 -4.2 -9.0 type II 3-dehydroquinate dehydratase compare
HMPREF1078_RS07220 -4.2 -11.7 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS15335 -4.0 -8.2 acetylglutamate kinase compare
HMPREF1078_RS15450 -3.9 -1.2 Fe-S cluster domain-containing protein compare
HMPREF1078_RS05835 -3.8 -3.0 M20 family metallo-hydrolase compare
HMPREF1078_RS03090 -3.6 -8.1 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS07215 -3.6 -9.7 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1078_RS07775 -3.6 -4.3 twin-arginine translocase subunit TatC compare
HMPREF1078_RS12530 -3.5 -10.4 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1078_RS14285 -3.5 -5.4 IMP dehydrogenase compare
HMPREF1078_RS04365 -3.5 -6.3 hypothetical protein compare
HMPREF1078_RS11315 -3.5 -13.8 argininosuccinate lyase compare
HMPREF1078_RS06805 -3.5 -10.9 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS15400 -3.4 -16.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS10385 -3.4 -10.5 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1078_RS12535 -3.3 -4.5 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1078_RS04325 -3.3 -15.8 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS12080 -3.3 -13.2 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS06740 -3.3 -8.5 DUF4271 domain-containing protein compare
HMPREF1078_RS19570 -3.3 -1.4 hypothetical protein compare
HMPREF1078_RS04660 -3.2 -1.4 FtsL-like putative cell division protein compare
HMPREF1078_RS02440 -3.2 -8.2 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1078_RS00130 -3.2 -6.7 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1078_RS06810 -3.1 -9.0 hypothetical protein compare
HMPREF1078_RS06425 -3.1 -7.9 DUF4252 domain-containing protein compare
HMPREF1078_RS13570 -3.0 -9.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1078_RS00150 -3.0 -10.1 tryptophan synthase subunit beta compare
HMPREF1078_RS10390 -3.0 -8.3 cofactor-independent phosphoglycerate mutase compare
HMPREF1078_RS10275 -3.0 -2.9 biopolymer transporter ExbD compare
HMPREF1078_RS13530 -2.9 -9.4 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS05935 -2.9 -2.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS00135 -2.9 -7.2 anthranilate phosphoribosyltransferase compare
HMPREF1078_RS10655 -2.9 -7.2 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1078_RS13175 -2.9 -2.0 hypothetical protein compare
HMPREF1078_RS04655 -2.9 -3.2 penicillin-binding protein compare
HMPREF1078_RS00120 -2.9 -9.4 tryptophan synthase subunit alpha compare
HMPREF1078_RS10660 -2.8 -7.6 acetylornithine carbamoyltransferase compare
HMPREF1078_RS10395 -2.8 -10.4 threonine synthase compare
HMPREF1078_RS16160 -2.8 -10.4 gliding motility lipoprotein GldH compare
HMPREF1078_RS05920 -2.8 -1.9 RNA polymerase factor sigma-54 compare
HMPREF1078_RS10570 -2.8 -8.0 GNAT family N-acetyltransferase compare
HMPREF1078_RS10580 -2.8 -6.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1078_RS02215 -2.7 -13.9 DUF5686 and carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1078_RS06745 -2.7 -3.7 uroporphyrinogen-III synthase compare
HMPREF1078_RS20055 -2.7 -1.6 hypothetical protein compare
HMPREF1078_RS10575 -2.6 -8.1 argininosuccinate synthase compare
HMPREF1078_RS10280 -2.6 -3.5 energy transducer TonB compare
HMPREF1078_RS16710 -2.6 -5.0 chorismate synthase compare
HMPREF1078_RS01125 -2.6 -9.0 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1078_RS08760 -2.5 -1.1 tRNA-Lys compare
HMPREF1078_RS05505 -2.5 -4.8 gliding motility protein GldL compare
HMPREF1078_RS01905 -2.5 -8.1 hemolysin III family protein compare
HMPREF1078_RS09070 -2.5 -2.0 conjugal transfer protein TraO compare
HMPREF1078_RS13565 -2.5 -7.3 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1078_RS04370 -2.5 -1.6 30S ribosomal protein S1 compare
HMPREF1078_RS07205 -2.5 -4.1 shikimate kinase compare
HMPREF1078_RS01120 -2.5 -8.7 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
HMPREF1078_RS15405 -2.5 -7.3 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS04555 -2.5 -9.3 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS02445 -2.4 -6.6 histidinol-phosphate transaminase compare
HMPREF1078_RS16175 -2.4 -3.9 diacylglycerol kinase family lipid kinase compare
HMPREF1078_RS19485 -2.4 -1.3 hypothetical protein compare
HMPREF1078_RS15325 -2.4 -7.7 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS11010 -2.4 -11.1 hypothetical protein compare
HMPREF1078_RS17685 -2.4 -0.9 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1078_RS04820 -2.3 -4.4 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS02450 -2.3 -9.3 histidinol dehydrogenase compare
HMPREF1078_RS13545 -2.3 -10.2 diaminopimelate decarboxylase compare
HMPREF1078_RS01135 -2.3 -5.5 prephenate dehydratase compare
HMPREF1078_RS00145 -2.2 -9.8 anthranilate synthase component I family protein compare
HMPREF1078_RS10095 -2.2 -8.8 ABC transporter permease compare
HMPREF1078_RS13575 -2.2 -6.9 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1078_RS13915 -2.2 -10.2 tetratricopeptide repeat protein compare
HMPREF1078_RS04710 -2.2 -9.9 DUF4954 family protein compare
HMPREF1078_RS09885 -2.2 -11.4 alpha amylase C-terminal domain-containing protein compare
HMPREF1078_RS10005 -2.1 -9.5 TonB-dependent receptor compare
HMPREF1078_RS06795 -2.1 -8.8 THUMP domain-containing protein compare
HMPREF1078_RS10770 -2.1 -1.5 DUF4248 domain-containing protein compare
HMPREF1078_RS07460 -2.1 -2.4 ABC transporter ATP-binding protein compare
HMPREF1078_RS04585 -2.1 -2.3 SprT family zinc-dependent metalloprotease compare
HMPREF1078_RS02965 -2.1 -4.4 phage holin family protein compare
HMPREF1078_RS05485 -2.1 -3.0 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
HMPREF1078_RS04485 -2.0 -4.9 T9SS type A sorting domain-containing protein compare
HMPREF1078_RS07470 -2.0 -3.0 ABC transporter substrate-binding protein compare
HMPREF1078_RS05515 -2.0 -6.6 gliding motility protein GldN compare
HMPREF1078_RS14505 -2.0 -11.0 hypothetical protein compare
HMPREF1078_RS13560 -1.9 -3.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1078_RS16640 -1.9 -11.3 3-isopropylmalate dehydrogenase compare
HMPREF1078_RS13435 -1.9 -9.0 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS05620 -1.9 -9.8 tetratricopeptide repeat protein compare
HMPREF1078_RS04805 -1.9 -4.9 UvrD-helicase domain-containing protein compare
HMPREF1078_RS07755 -1.9 -2.7 outer membrane protein assembly factor BamD compare
HMPREF1078_RS20020 -1.9 -1.4 hypothetical protein compare
HMPREF1078_RS00210 -1.9 -2.3 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS16675 -1.9 -5.9 ketol-acid reductoisomerase compare
HMPREF1078_RS00505 -1.9 -1.3 RecQ family ATP-dependent DNA helicase compare
HMPREF1078_RS04110 -1.9 -9.4 hypothetical protein compare
HMPREF1078_RS02680 -1.9 -1.7 hypothetical protein compare
HMPREF1078_RS10745 -1.9 -8.0 MlaD family protein compare
HMPREF1078_RS15105 -1.9 -1.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1078_RS05545 -1.8 -6.6 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS11005 -1.8 -10.2 tetratricopeptide repeat protein compare
HMPREF1078_RS16660 -1.8 -6.6 3-isopropylmalate dehydratase large subunit compare
HMPREF1078_RS09965 -1.8 -6.2 SPOR domain-containing protein compare
HMPREF1078_RS01130 -1.8 -7.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1078_RS19515 -1.8 -1.4 hypothetical protein compare
HMPREF1078_RS07850 -1.8 -7.8 AAA family ATPase compare
HMPREF1078_RS14620 -1.8 -5.4 DNA replication and repair protein RecF compare
HMPREF1078_RS09775 -1.8 -10.2 translocation/assembly module TamB compare
HMPREF1078_RS10105 -1.8 -8.4 TolC family protein compare
HMPREF1078_RS00215 -1.8 -1.7 biotin/lipoyl-binding protein compare
HMPREF1078_RS14995 -1.8 -9.1 BamA/TamA family outer membrane protein compare
HMPREF1078_RS07175 -1.8 -3.1 lipopolysaccharide kinase InaA family protein compare
HMPREF1078_RS13050 -1.8 -3.1 primosomal protein N' compare
HMPREF1078_RS13130 -1.8 -3.3 Fur family transcriptional regulator compare
HMPREF1078_RS04510 -1.8 -9.0 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS07610 -1.7 -4.5 glycosyltransferase family 2 protein compare
HMPREF1078_RS01865 -1.7 -3.5 tetratricopeptide repeat protein compare
HMPREF1078_RS13995 -1.7 -9.6 hypothetical protein compare
HMPREF1078_RS10100 -1.7 -6.1 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1078_RS16230 -1.7 -3.8 porin family protein compare
HMPREF1078_RS15845 -1.7 -3.6 copper homeostasis protein CutC compare
HMPREF1078_RS07705 -1.7 -6.4 sugar transferase compare
HMPREF1078_RS00565 -1.7 -6.0 phosphatidylglycerophosphatase A compare
HMPREF1078_RS04840 -1.7 -10.3 type IX secretion system sortase PorU compare
HMPREF1078_RS11200 -1.7 -7.7 aspartate--ammonia ligase compare
HMPREF1078_RS16695 -1.7 -5.7 dihydroxy-acid dehydratase compare
HMPREF1078_RS17255 -1.7 -9.4 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS07165 -1.7 -3.8 glycosyltransferase family 9 protein compare
HMPREF1078_RS08670 -1.7 -5.7 hypothetical protein compare
HMPREF1078_RS13185 -1.7 -5.6 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS06560 -1.7 -12.9 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS05870 -1.7 -5.2 PglZ domain-containing protein compare
HMPREF1078_RS07450 -1.6 -3.6 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
HMPREF1078_RS17145 -1.6 -1.1 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1078_RS07440 -1.6 -3.1 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
HMPREF1078_RS00925 -1.6 -8.0 UpxY family transcription antiterminator compare
HMPREF1078_RS17080 -1.6 -5.1 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS05845 -1.6 -4.8 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1078_RS06615 -1.6 -3.7 PH domain-containing protein compare
HMPREF1078_RS17050 -1.6 -3.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
HMPREF1078_RS07885 -1.6 -7.4 hypothetical protein compare
HMPREF1078_RS07485 -1.6 -6.2 formate--tetrahydrofolate ligase compare
HMPREF1078_RS05280 -1.6 -3.9 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS15315 -1.6 -8.2 DUF4831 family protein compare
HMPREF1078_RS09025 -1.6 -3.4 DUF4133 domain-containing protein compare
HMPREF1078_RS05495 -1.6 -4.5 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS16130 -1.6 -5.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1078_RS17075 -1.6 -4.3 ABC transporter permease compare
HMPREF1078_RS10270 -1.6 -4.1 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1078_RS13110 -1.6 -1.2 gamma carbonic anhydrase family protein compare
HMPREF1078_RS11105 -1.5 -5.4 type IX secretion system protein PorQ compare
HMPREF1078_RS00220 -1.5 -10.6 tetratricopeptide repeat protein compare
HMPREF1078_RS16650 -1.5 -7.7 alpha-isopropylmalate synthase regulatory domain-containing protein compare
HMPREF1078_RS07555 -1.5 -7.1 phosphoethanolamine transferase compare
HMPREF1078_RS00765 -1.5 -5.9 FecR domain-containing protein compare
HMPREF1078_RS07435 -1.5 -3.7 precorrin-3B C(17)-methyltransferase compare
HMPREF1078_RS12545 -1.5 -2.4 carboxyl transferase domain-containing protein compare
HMPREF1078_RS02390 -1.5 -8.1 tetratricopeptide repeat protein compare
HMPREF1078_RS07855 -1.5 -1.0 branched-chain amino acid aminotransferase compare
HMPREF1078_RS13020 -1.5 -10.0 cell surface protein SprA compare
HMPREF1078_RS02455 -1.5 -3.6 ATP phosphoribosyltransferase compare
HMPREF1078_RS14615 -1.5 -1.7 tetratricopeptide repeat protein compare
HMPREF1078_RS18895 -1.5 -1.1 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1078_RS19280 -1.5 -2.2 hypothetical protein compare
HMPREF1078_RS04770 -1.5 -1.7 MmcQ/YjbR family DNA-binding protein compare
HMPREF1078_RS19790 -1.5 -0.8 hypothetical protein compare
HMPREF1078_RS10090 -1.5 -7.9 ABC transporter permease compare
HMPREF1078_RS16115 -1.5 -3.5 hypothetical protein compare
HMPREF1078_RS12115 -1.5 -4.3 thioredoxin compare
HMPREF1078_RS13555 -1.5 -3.8 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS01450 -1.5 -6.1 cytochrome c biogenesis protein CcsA compare
HMPREF1078_RS01830 -1.4 -1.4 MoxR family ATPase compare
HMPREF1078_RS04685 -1.4 -1.1 30S ribosome-binding factor RbfA compare
HMPREF1078_RS10160 -1.4 -3.7 OmpA family protein compare
HMPREF1078_RS16690 -1.4 -4.8 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1078_RS10435 -1.4 -1.1 tRNA-Thr compare
HMPREF1078_RS07895 -1.4 -4.3 molecular chaperone DnaJ compare
HMPREF1078_RS17125 -1.4 -5.6 permease-like cell division protein FtsX compare
HMPREF1078_RS12410 -1.4 -1.5 signal peptidase I compare
HMPREF1078_RS00795 -1.4 -7.0 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS13375 -1.4 -6.5 NADP-specific glutamate dehydrogenase compare
HMPREF1078_RS09055 -1.4 -2.4 TraL conjugative transposon family protein compare
HMPREF1078_RS11260 -1.4 -4.1 OmpH family outer membrane protein compare
HMPREF1078_RS16565 -1.4 -3.2 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1078_RS16665 -1.4 -5.4 2-isopropylmalate synthase compare
HMPREF1078_RS07605 -1.4 -4.2 GNAT family N-acetyltransferase compare
HMPREF1078_RS13270 -1.4 -2.9 ATP-binding protein compare
HMPREF1078_RS14700 -1.4 -7.4 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS16125 -1.4 -1.1 hypothetical protein compare
HMPREF1078_RS07725 -1.4 -5.4 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS05510 -1.4 -4.1 gliding motility protein GldM compare
HMPREF1078_RS13970 -1.4 -4.6 glucosaminidase domain-containing protein compare
HMPREF1078_RS14945 -1.3 -3.4 DUF1282 family protein compare
HMPREF1078_RS14640 -1.3 -2.5 S41 family peptidase compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Dextrin from potato starch in Parabacteroides merdae CL09T00C40

For carbon source Dextrin from potato starch across organisms