Experiment set1S43 for Pseudomonas aeruginosa PA14
D3_S
Group: phageMedia: LB
Culturing: Paeruginosa_PA14_ML18, 48 well microplate, Aerobic, at 37 (C), shaken=double orbital, continuous, 205cpm
By: DP on 05/05/2025
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 2 genes in this experiment
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Arginine Biosynthesis extended | 1 |
| Arginine Deiminase Pathway | 1 |
| Arginine and Ornithine Degradation | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-citrulline degradation | 3 | 3 | 1 |
| L-arginine degradation V (arginine deiminase pathway) | 4 | 4 | 1 |
| L-arginine degradation XIII (reductive Stickland reaction) | 5 | 5 | 1 |
| urea cycle | 5 | 3 | 1 |
| L-arginine degradation XIV (oxidative Stickland reaction) | 6 | 2 | 1 |
| L-citrulline biosynthesis | 8 | 6 | 1 |
| L-arginine biosynthesis I (via L-ornithine) | 9 | 9 | 1 |
| L-arginine biosynthesis IV (archaea) | 9 | 4 | 1 |
| L-arginine biosynthesis II (acetyl cycle) | 10 | 10 | 1 |
| superpathway of L-citrulline metabolism | 12 | 8 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 16 | 1 |