Experiment set1S424 for Parabacteroides merdae CL09T00C40

Compare to:

D-Maltose monohydrate 10 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS03090 -7.5 -5.2 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS10570 -5.9 -4.1 GNAT family N-acetyltransferase compare
HMPREF1078_RS05545 -5.9 -7.0 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS07755 -5.8 -4.0 outer membrane protein assembly factor BamD compare
HMPREF1078_RS13565 -5.7 -8.8 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1078_RS01120 -5.7 -9.5 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
HMPREF1078_RS13575 -5.7 -9.5 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1078_RS10660 -5.6 -8.6 acetylornithine carbamoyltransferase compare
HMPREF1078_RS05835 -5.6 -3.5 M20 family metallo-hydrolase compare
HMPREF1078_RS10385 -5.6 -6.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1078_RS10620 -5.5 -6.6 pyrroline-5-carboxylate reductase compare
HMPREF1078_RS11315 -5.4 -12.1 argininosuccinate lyase compare
HMPREF1078_RS02450 -5.4 -6.4 histidinol dehydrogenase compare
HMPREF1078_RS15400 -5.4 -12.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS00130 -5.3 -5.2 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1078_RS13570 -5.3 -8.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1078_RS10395 -5.2 -8.7 threonine synthase compare
HMPREF1078_RS04365 -5.2 -3.6 hypothetical protein compare
HMPREF1078_RS12115 -5.1 -3.5 thioredoxin compare
HMPREF1078_RS15405 -5.1 -6.1 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS00150 -5.1 -11.4 tryptophan synthase subunit beta compare
HMPREF1078_RS07205 -5.0 -3.5 shikimate kinase compare
HMPREF1078_RS01905 -5.0 -4.9 hemolysin III family protein compare
HMPREF1078_RS10650 -5.0 -6.8 glutamate 5-kinase compare
HMPREF1078_RS10655 -5.0 -6.8 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1078_RS00795 -4.9 -13.2 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS00135 -4.9 -8.1 anthranilate phosphoribosyltransferase compare
HMPREF1078_RS10390 -4.9 -7.4 cofactor-independent phosphoglycerate mutase compare
HMPREF1078_RS02445 -4.8 -4.7 histidinol-phosphate transaminase compare
HMPREF1078_RS10580 -4.8 -12.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1078_RS06740 -4.8 -12.0 DUF4271 domain-containing protein compare
HMPREF1078_RS12080 -4.8 -11.6 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS01125 -4.8 -10.2 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1078_RS00145 -4.7 -11.5 anthranilate synthase component I family protein compare
HMPREF1078_RS13995 -4.7 -10.6 hypothetical protein compare
HMPREF1078_RS13545 -4.7 -10.5 diaminopimelate decarboxylase compare
HMPREF1078_RS04485 -4.7 -8.5 T9SS type A sorting domain-containing protein compare
HMPREF1078_RS16160 -4.6 -11.1 gliding motility lipoprotein GldH compare
HMPREF1078_RS06810 -4.6 -13.2 hypothetical protein compare
HMPREF1078_RS00120 -4.6 -10.3 tryptophan synthase subunit alpha compare
HMPREF1078_RS12535 -4.6 -3.1 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1078_RS15335 -4.5 -6.9 acetylglutamate kinase compare
HMPREF1078_RS12530 -4.5 -6.2 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1078_RS11005 -4.4 -12.8 tetratricopeptide repeat protein compare
HMPREF1078_RS01130 -4.4 -14.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1078_RS00125 -4.4 -7.8 phosphoribosylanthranilate isomerase compare
HMPREF1078_RS11820 -4.3 -6.6 M28 family peptidase compare
HMPREF1078_RS13530 -4.2 -11.3 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS10575 -4.2 -11.3 argininosuccinate synthase compare
HMPREF1078_RS14200 -4.2 -2.9 shikimate dehydrogenase compare
HMPREF1078_RS00220 -4.2 -23.4 tetratricopeptide repeat protein compare
HMPREF1078_RS15315 -4.2 -6.4 DUF4831 family protein compare
HMPREF1078_RS04710 -4.2 -11.1 DUF4954 family protein compare
HMPREF1078_RS02440 -4.2 -8.0 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1078_RS13915 -4.1 -4.0 tetratricopeptide repeat protein compare
HMPREF1078_RS11200 -4.1 -10.3 aspartate--ammonia ligase compare
HMPREF1078_RS04700 -4.1 -8.3 type II 3-dehydroquinate dehydratase compare
HMPREF1078_RS14995 -4.0 -15.8 BamA/TamA family outer membrane protein compare
HMPREF1078_RS10585 -4.0 -12.1 aspartate aminotransferase family protein compare
HMPREF1078_RS01135 -4.0 -6.9 prephenate dehydratase compare
HMPREF1078_RS16655 -4.0 -3.5 3-isopropylmalate dehydratase small subunit compare
HMPREF1078_RS07215 -4.0 -9.9 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1078_RS10745 -3.9 -12.3 MlaD family protein compare
HMPREF1078_RS07430 -3.9 -9.4 AMP-binding protein compare
HMPREF1078_RS07605 -3.9 -7.5 GNAT family N-acetyltransferase compare
HMPREF1078_RS06805 -3.9 -13.6 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS09775 -3.9 -16.7 translocation/assembly module TamB compare
HMPREF1078_RS17495 -3.9 -24.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS04555 -3.9 -7.8 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS11010 -3.8 -8.9 hypothetical protein compare
HMPREF1078_RS17480 -3.8 -19.3 glycosyltransferase compare
HMPREF1078_RS14505 -3.8 -16.7 hypothetical protein compare
HMPREF1078_RS06560 -3.8 -15.6 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS00925 -3.7 -11.5 UpxY family transcription antiterminator compare
HMPREF1078_RS06425 -3.7 -5.7 DUF4252 domain-containing protein compare
HMPREF1078_RS01865 -3.7 -2.5 tetratricopeptide repeat protein compare
HMPREF1078_RS04370 -3.6 -2.0 30S ribosomal protein S1 compare
HMPREF1078_RS17485 -3.6 -20.0 glycosyl transferase compare
HMPREF1078_RS04840 -3.6 -8.1 type IX secretion system sortase PorU compare
HMPREF1078_RS04130 -3.6 -9.2 hypothetical protein compare
HMPREF1078_RS04325 -3.6 -19.0 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS02215 -3.6 -9.9 DUF5686 and carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1078_RS13965 -3.6 -1.1 AIR synthase-related protein compare
HMPREF1078_RS17540 -3.5 -7.9 glycosyltransferase family 2 protein compare
HMPREF1078_RS09965 -3.5 -8.7 SPOR domain-containing protein compare
HMPREF1078_RS12395 -3.5 -1.5 NVEALA domain-containing protein compare
HMPREF1078_RS17255 -3.5 -11.3 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS16130 -3.5 -7.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
HMPREF1078_RS10275 -3.5 -2.4 biopolymer transporter ExbD compare
HMPREF1078_RS07460 -3.4 -2.4 ABC transporter ATP-binding protein compare
HMPREF1078_RS12525 -3.4 -7.5 F0F1 ATP synthase subunit gamma compare
HMPREF1078_RS10280 -3.4 -2.4 energy transducer TonB compare
HMPREF1078_RS09885 -3.4 -11.2 alpha amylase C-terminal domain-containing protein compare
HMPREF1078_RS13560 -3.4 -5.6 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1078_RS06795 -3.4 -12.5 THUMP domain-containing protein compare
HMPREF1078_RS15270 -3.4 -8.5 RIP metalloprotease RseP compare
HMPREF1078_RS07780 -3.4 -3.5 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS07705 -3.4 -9.7 sugar transferase compare
HMPREF1078_RS04560 -3.4 -6.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
HMPREF1078_RS04655 -3.4 -3.7 penicillin-binding protein compare
HMPREF1078_RS07725 -3.3 -9.6 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS10005 -3.3 -3.3 TonB-dependent receptor compare
HMPREF1078_RS02175 -3.3 -7.4 patatin-like phospholipase family protein compare
HMPREF1078_RS16660 -3.3 -12.4 3-isopropylmalate dehydratase large subunit compare
HMPREF1078_RS07220 -3.3 -10.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS14285 -3.3 -3.9 IMP dehydrogenase compare
HMPREF1078_RS15260 -3.3 -8.6 M23 family metallopeptidase compare
HMPREF1078_RS13555 -3.3 -6.1 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS16640 -3.3 -14.5 3-isopropylmalate dehydrogenase compare
HMPREF1078_RS11105 -3.2 -3.9 type IX secretion system protein PorQ compare
HMPREF1078_RS04095 -3.2 -8.6 cardiolipin synthase compare
HMPREF1078_RS17075 -3.2 -8.3 ABC transporter permease compare
HMPREF1078_RS19575 -3.2 -2.5 hypothetical protein compare
HMPREF1078_RS12515 -3.2 -8.5 F0F1 ATP synthase subunit delta compare
HMPREF1078_RS16080 -3.2 -7.9 TrkA C-terminal domain-containing protein compare
HMPREF1078_RS10270 -3.2 -2.2 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1078_RS07610 -3.2 -7.0 glycosyltransferase family 2 protein compare
HMPREF1078_RS14945 -3.1 -6.7 DUF1282 family protein compare
HMPREF1078_RS16875 -3.1 -4.3 type I methionyl aminopeptidase compare
HMPREF1078_RS12520 -3.1 -9.0 F0F1 ATP synthase subunit alpha compare
HMPREF1078_RS10565 -3.0 -5.8 arginine repressor compare
HMPREF1078_RS12500 -3.0 -9.6 F0F1 ATP synthase subunit A compare
HMPREF1078_RS04660 -3.0 -1.3 FtsL-like putative cell division protein compare
HMPREF1078_RS12505 -3.0 -5.8 ATP synthase F0 subunit C compare
HMPREF1078_RS07775 -3.0 -4.6 twin-arginine translocase subunit TatC compare
HMPREF1078_RS12485 -3.0 -9.5 F0F1 ATP synthase subunit beta compare
HMPREF1078_RS02390 -2.9 -7.1 tetratricopeptide repeat protein compare
HMPREF1078_RS07065 -2.9 -7.8 GH3 auxin-responsive promoter family protein compare
HMPREF1078_RS07850 -2.9 -11.6 AAA family ATPase compare
HMPREF1078_RS04415 -2.9 -8.6 DUF3127 domain-containing protein compare
HMPREF1078_RS05505 -2.9 -2.8 gliding motility protein GldL compare
HMPREF1078_RS05160 -2.9 -7.5 mannose-1-phosphate guanylyltransferase compare
HMPREF1078_RS12725 -2.9 -4.9 DUF349 domain-containing protein compare
HMPREF1078_RS13185 -2.9 -3.4 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS05510 -2.9 -2.0 gliding motility protein GldM compare
HMPREF1078_RS17490 -2.9 -9.6 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS07885 -2.9 -7.8 hypothetical protein compare
HMPREF1078_RS13935 -2.9 -7.1 hypothetical protein compare
HMPREF1078_RS10645 -2.8 -4.6 AMP-binding protein compare
HMPREF1078_RS16665 -2.8 -9.8 2-isopropylmalate synthase compare
HMPREF1078_RS04820 -2.8 -3.3 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS06545 -2.8 -11.9 DUF4294 domain-containing protein compare
HMPREF1078_RS04110 -2.8 -10.6 hypothetical protein compare
HMPREF1078_RS14735 -2.8 -12.5 endolytic transglycosylase MltG compare
HMPREF1078_RS05870 -2.7 -4.6 PglZ domain-containing protein compare
HMPREF1078_RS07895 -2.7 -4.2 molecular chaperone DnaJ compare
HMPREF1078_RS03485 -2.7 -9.4 phosphomethylpyrimidine synthase ThiC compare
HMPREF1078_RS15845 -2.7 -5.4 copper homeostasis protein CutC compare
HMPREF1078_RS15325 -2.7 -6.5 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS06980 -2.7 -3.4 tRNA threonylcarbamoyladenosine dehydratase compare
HMPREF1078_RS10105 -2.7 -11.8 TolC family protein compare
HMPREF1078_RS16710 -2.7 -2.6 chorismate synthase compare
HMPREF1078_RS13690 -2.6 -5.1 3'-5' exonuclease compare
HMPREF1078_RS06745 -2.6 -1.8 uroporphyrinogen-III synthase compare
HMPREF1078_RS17675 -2.6 -3.1 adenosylcobinamide-GDP ribazoletransferase compare
HMPREF1078_RS11260 -2.6 -2.5 OmpH family outer membrane protein compare
HMPREF1078_RS05500 -2.6 -3.5 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS04510 -2.6 -11.2 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS06420 -2.6 -3.8 hypothetical protein compare
HMPREF1078_RS11320 -2.6 -8.9 hypothetical protein compare
HMPREF1078_RS20105 -2.6 -12.0 peptidylprolyl isomerase compare
HMPREF1078_RS13270 -2.5 -4.5 ATP-binding protein compare
HMPREF1078_RS02680 -2.5 -2.1 hypothetical protein compare
HMPREF1078_RS10065 -2.5 -1.3 lysine--tRNA ligase compare
HMPREF1078_RS16115 -2.5 -5.6 hypothetical protein compare
HMPREF1078_RS10100 -2.5 -8.7 efflux RND transporter periplasmic adaptor subunit compare
HMPREF1078_RS10090 -2.5 -14.0 ABC transporter permease compare
HMPREF1078_RS10145 -2.5 -5.8 bifunctional nuclease family protein compare
HMPREF1078_RS04715 -2.5 -5.8 GTPase HflX compare
HMPREF1078_RS14485 -2.4 -2.6 alkaline phosphatase family protein compare
HMPREF1078_RS04355 -2.4 -5.1 hypothetical protein compare
HMPREF1078_RS08785 -2.4 -8.5 DUF3943 domain-containing protein compare
HMPREF1078_RS07555 -2.4 -8.5 phosphoethanolamine transferase compare
HMPREF1078_RS14620 -2.4 -4.6 DNA replication and repair protein RecF compare
HMPREF1078_RS13700 -2.4 -1.3 DNA translocase FtsK compare
HMPREF1078_RS15460 -2.4 -5.9 DUF3078 domain-containing protein compare
HMPREF1078_RS12750 -2.4 -7.5 DoxX family protein compare
HMPREF1078_RS05280 -2.3 -2.8 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS05620 -2.3 -8.8 tetratricopeptide repeat protein compare
HMPREF1078_RS11630 -2.3 -1.6 HU family DNA-binding protein compare
HMPREF1078_RS13020 -2.3 -9.1 cell surface protein SprA compare
HMPREF1078_RS10025 -2.3 -7.6 biotin/lipoyl-binding protein compare
HMPREF1078_RS00565 -2.3 -6.6 phosphatidylglycerophosphatase A compare
HMPREF1078_RS04405 -2.3 -4.6 M23 family metallopeptidase compare
HMPREF1078_RS12510 -2.3 -1.7 F0F1 ATP synthase subunit B compare
HMPREF1078_RS01980 -2.3 -8.5 3'-5' exonuclease compare
HMPREF1078_RS10755 -2.3 -1.5 50S ribosomal protein L9 compare
HMPREF1078_RS17080 -2.3 -5.5 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS05495 -2.3 -3.1 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS10095 -2.2 -7.0 ABC transporter permease compare
HMPREF1078_RS04310 -2.2 -11.5 LysE family transporter compare
HMPREF1078_RS09055 -2.2 -2.2 TraL conjugative transposon family protein compare
HMPREF1078_RS19900 -2.2 -1.0 AraC family ligand binding domain-containing protein compare
HMPREF1078_RS09710 -2.2 -4.4 cobyrinate a,c-diamide synthase compare
HMPREF1078_RS00200 -2.2 -1.5 Holliday junction resolvase RuvX compare
HMPREF1078_RS12185 -2.2 -7.3 hypothetical protein compare
HMPREF1078_RS05935 -2.2 -3.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS17025 -2.2 -7.3 hypothetical protein compare
HMPREF1078_RS13970 -2.1 -5.3 glucosaminidase domain-containing protein compare
HMPREF1078_RS02130 -2.1 -6.0 hybrid sensor histidine kinase/response regulator compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Maltose monohydrate in Parabacteroides merdae CL09T00C40

For carbon source D-Maltose monohydrate across organisms