Experiment set1S417 for Parabacteroides merdae CL09T00C40

Compare to:

D-Mannose 10 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS10660 -6.9 -10.5 acetylornithine carbamoyltransferase compare
HMPREF1078_RS07755 -6.7 -4.6 outer membrane protein assembly factor BamD compare
HMPREF1078_RS13565 -6.7 -12.1 imidazole glycerol phosphate synthase subunit HisF compare
HMPREF1078_RS00125 -6.6 -6.4 phosphoribosylanthranilate isomerase compare
HMPREF1078_RS05935 -6.5 -4.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS16675 -6.3 -11.4 ketol-acid reductoisomerase compare
HMPREF1078_RS10580 -6.2 -14.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
HMPREF1078_RS16655 -6.1 -4.2 3-isopropylmalate dehydratase small subunit compare
HMPREF1078_RS04700 -5.9 -8.1 type II 3-dehydroquinate dehydratase compare
HMPREF1078_RS10390 -5.9 -9.1 cofactor-independent phosphoglycerate mutase compare
HMPREF1078_RS10395 -5.9 -12.0 threonine synthase compare
HMPREF1078_RS13575 -5.9 -15.2 imidazole glycerol phosphate synthase subunit HisH compare
HMPREF1078_RS05545 -5.8 -11.8 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS10650 -5.8 -9.7 glutamate 5-kinase compare
HMPREF1078_RS04325 -5.8 -21.8 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS12080 -5.7 -14.4 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS11820 -5.7 -6.8 M28 family peptidase compare
HMPREF1078_RS15335 -5.7 -7.8 acetylglutamate kinase compare
HMPREF1078_RS10575 -5.6 -13.1 argininosuccinate synthase compare
HMPREF1078_RS16640 -5.6 -18.9 3-isopropylmalate dehydrogenase compare
HMPREF1078_RS10570 -5.6 -10.7 GNAT family N-acetyltransferase compare
HMPREF1078_RS13530 -5.6 -13.0 pyridoxal phosphate-dependent aminotransferase compare
HMPREF1078_RS16660 -5.6 -15.3 3-isopropylmalate dehydratase large subunit compare
HMPREF1078_RS01125 -5.5 -12.9 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II compare
HMPREF1078_RS15405 -5.5 -9.3 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS11315 -5.5 -18.4 argininosuccinate lyase compare
HMPREF1078_RS02440 -5.5 -8.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
HMPREF1078_RS14700 -5.5 -19.0 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD compare
HMPREF1078_RS14200 -5.4 -3.8 shikimate dehydrogenase compare
HMPREF1078_RS07215 -5.4 -11.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
HMPREF1078_RS13545 -5.4 -14.8 diaminopimelate decarboxylase compare
HMPREF1078_RS02450 -5.4 -12.0 histidinol dehydrogenase compare
HMPREF1078_RS00135 -5.4 -11.5 anthranilate phosphoribosyltransferase compare
HMPREF1078_RS13570 -5.4 -13.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
HMPREF1078_RS00130 -5.4 -7.3 indole-3-glycerol phosphate synthase TrpC compare
HMPREF1078_RS15400 -5.3 -20.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS01130 -5.3 -16.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1078_RS04710 -5.3 -14.2 DUF4954 family protein compare
HMPREF1078_RS05835 -5.2 -4.2 M20 family metallo-hydrolase compare
HMPREF1078_RS00150 -5.2 -16.6 tryptophan synthase subunit beta compare
HMPREF1078_RS10645 -5.1 -11.1 AMP-binding protein compare
HMPREF1078_RS16650 -5.1 -16.0 alpha-isopropylmalate synthase regulatory domain-containing protein compare
HMPREF1078_RS12530 -5.1 -10.8 anaerobic ribonucleoside triphosphate reductase compare
HMPREF1078_RS17540 -5.0 -9.1 glycosyltransferase family 2 protein compare
HMPREF1078_RS16690 -5.0 -12.6 biosynthetic-type acetolactate synthase large subunit compare
HMPREF1078_RS06805 -5.0 -17.6 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS07220 -4.9 -12.4 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS13560 -4.9 -7.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
HMPREF1078_RS02445 -4.9 -8.8 histidinol-phosphate transaminase compare
HMPREF1078_RS01120 -4.9 -15.4 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
HMPREF1078_RS16160 -4.9 -15.3 gliding motility lipoprotein GldH compare
HMPREF1078_RS07705 -4.8 -10.8 sugar transferase compare
HMPREF1078_RS15315 -4.8 -12.1 DUF4831 family protein compare
HMPREF1078_RS12535 -4.8 -5.7 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1078_RS07610 -4.8 -6.6 glycosyltransferase family 2 protein compare
HMPREF1078_RS16695 -4.8 -10.8 dihydroxy-acid dehydratase compare
HMPREF1078_RS10585 -4.8 -12.0 aspartate aminotransferase family protein compare
HMPREF1078_RS02455 -4.8 -9.7 ATP phosphoribosyltransferase compare
HMPREF1078_RS00120 -4.7 -14.2 tryptophan synthase subunit alpha compare
HMPREF1078_RS01865 -4.7 -3.2 tetratricopeptide repeat protein compare
HMPREF1078_RS13915 -4.7 -11.4 tetratricopeptide repeat protein compare
HMPREF1078_RS00090 -4.7 -12.7 GNAT family N-acetyltransferase compare
HMPREF1078_RS05280 -4.6 -6.6 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS00145 -4.6 -16.8 anthranilate synthase component I family protein compare
HMPREF1078_RS16665 -4.5 -15.0 2-isopropylmalate synthase compare
HMPREF1078_RS04555 -4.5 -12.1 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS14285 -4.5 -5.3 IMP dehydrogenase compare
HMPREF1078_RS11010 -4.5 -13.5 hypothetical protein compare
HMPREF1078_RS04840 -4.5 -14.6 type IX secretion system sortase PorU compare
HMPREF1078_RS06560 -4.4 -25.0 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS10005 -4.4 -5.2 TonB-dependent receptor compare
HMPREF1078_RS11005 -4.4 -21.4 tetratricopeptide repeat protein compare
HMPREF1078_RS09885 -4.4 -15.1 alpha amylase C-terminal domain-containing protein compare
HMPREF1078_RS07205 -4.2 -6.0 shikimate kinase compare
HMPREF1078_RS00085 -4.2 -11.9 PIG-L family deacetylase compare
HMPREF1078_RS10655 -4.2 -8.2 glutamate-5-semialdehyde dehydrogenase compare
HMPREF1078_RS08915 -4.2 -1.5 helix-turn-helix domain-containing protein compare
HMPREF1078_RS01135 -4.1 -9.8 prephenate dehydratase compare
HMPREF1078_RS10620 -4.1 -8.7 pyrroline-5-carboxylate reductase compare
HMPREF1078_RS07315 -4.1 -14.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS10385 -4.0 -10.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
HMPREF1078_RS00220 -4.0 -22.6 tetratricopeptide repeat protein compare
HMPREF1078_RS07320 -4.0 -11.0 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS00075 -3.9 -12.6 glycosyltransferase compare
HMPREF1078_RS06740 -3.9 -13.8 DUF4271 domain-containing protein compare
HMPREF1078_RS04485 -3.9 -10.1 T9SS type A sorting domain-containing protein compare
HMPREF1078_RS05505 -3.9 -5.3 gliding motility protein GldL compare
HMPREF1078_RS13995 -3.9 -16.2 hypothetical protein compare
HMPREF1078_RS05515 -3.9 -7.0 gliding motility protein GldN compare
HMPREF1078_RS04820 -3.9 -4.6 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS05870 -3.9 -7.4 PglZ domain-containing protein compare
HMPREF1078_RS11105 -3.9 -7.4 type IX secretion system protein PorQ compare
HMPREF1078_RS00080 -3.8 -16.7 polysaccharide deacetylase family protein compare
HMPREF1078_RS16710 -3.8 -4.5 chorismate synthase compare
HMPREF1078_RS16525 -3.8 -2.3 tRNA-Pro compare
HMPREF1078_RS11260 -3.8 -4.5 OmpH family outer membrane protein compare
HMPREF1078_RS03090 -3.7 -11.4 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS10265 -3.7 -8.3 pyridoxine 5'-phosphate synthase compare
HMPREF1078_RS11275 -3.7 -2.6 DUF6089 family protein compare
HMPREF1078_RS10275 -3.7 -3.6 biopolymer transporter ExbD compare
HMPREF1078_RS10280 -3.6 -3.9 energy transducer TonB compare
HMPREF1078_RS17255 -3.6 -14.3 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS10020 -3.6 -14.6 OadG family transporter subunit compare
HMPREF1078_RS06745 -3.6 -4.9 uroporphyrinogen-III synthase compare
HMPREF1078_RS17495 -3.6 -25.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
HMPREF1078_RS05495 -3.6 -4.9 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS15845 -3.6 -7.8 copper homeostasis protein CutC compare
HMPREF1078_RS10270 -3.5 -5.9 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1078_RS16730 -3.5 -9.6 acyltransferase compare
HMPREF1078_RS02390 -3.5 -10.8 tetratricopeptide repeat protein compare
HMPREF1078_RS17485 -3.5 -23.1 glycosyl transferase compare
HMPREF1078_RS17490 -3.4 -17.0 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS05500 -3.4 -7.6 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS09965 -3.4 -9.3 SPOR domain-containing protein compare
HMPREF1078_RS10745 -3.4 -13.2 MlaD family protein compare
HMPREF1078_RS07160 -3.3 -3.2 DUF4254 domain-containing protein compare
HMPREF1078_RS13185 -3.3 -7.9 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS04370 -3.3 -2.3 30S ribosomal protein S1 compare
HMPREF1078_RS10030 -3.3 -19.4 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1078_RS07165 -3.3 -3.9 glycosyltransferase family 9 protein compare
HMPREF1078_RS06530 -3.3 -8.3 radical SAM protein compare
HMPREF1078_RS14210 -3.3 -3.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
HMPREF1078_RS07885 -3.2 -11.4 hypothetical protein compare
HMPREF1078_RS00925 -3.2 -12.0 UpxY family transcription antiterminator compare
HMPREF1078_RS14615 -3.2 -2.2 tetratricopeptide repeat protein compare
HMPREF1078_RS09775 -3.2 -17.2 translocation/assembly module TamB compare
HMPREF1078_RS13020 -3.2 -16.2 cell surface protein SprA compare
HMPREF1078_RS05510 -3.2 -6.8 gliding motility protein GldM compare
HMPREF1078_RS11090 -3.2 -8.4 6-phosphofructokinase compare
HMPREF1078_RS10160 -3.1 -2.2 OmpA family protein compare
HMPREF1078_RS15460 -3.1 -9.8 DUF3078 domain-containing protein compare
HMPREF1078_RS10015 -3.1 -20.6 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS17075 -3.1 -10.1 ABC transporter permease compare
HMPREF1078_RS05920 -3.0 -3.6 RNA polymerase factor sigma-54 compare
HMPREF1078_RS11310 -3.0 -5.1 polyketide cyclase compare
HMPREF1078_RS06810 -3.0 -13.2 hypothetical protein compare
HMPREF1078_RS14640 -3.0 -2.9 S41 family peptidase compare
HMPREF1078_RS12115 -3.0 -6.8 thioredoxin compare
HMPREF1078_RS15280 -3.0 -5.7 malonyl-ACP O-methyltransferase BioC compare
HMPREF1078_RS02175 -3.0 -11.6 patatin-like phospholipase family protein compare
HMPREF1078_RS16685 -2.9 -6.0 acetolactate synthase small subunit compare
HMPREF1078_RS14685 -2.9 -10.1 aspartate 1-decarboxylase compare
HMPREF1078_RS19150 -2.9 -6.5 4-phosphoerythronate dehydrogenase PdxB compare
HMPREF1078_RS16230 -2.9 -5.5 porin family protein compare
HMPREF1078_RS10025 -2.9 -8.3 biotin/lipoyl-binding protein compare
HMPREF1078_RS17685 -2.9 -1.3 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1078_RS14995 -2.9 -13.8 BamA/TamA family outer membrane protein compare
HMPREF1078_RS14540 -2.8 -15.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
HMPREF1078_RS17145 -2.8 -1.9 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1078_RS11200 -2.8 -10.7 aspartate--ammonia ligase compare
HMPREF1078_RS01830 -2.8 -1.9 MoxR family ATPase compare
HMPREF1078_RS05620 -2.8 -13.9 tetratricopeptide repeat protein compare
HMPREF1078_RS16790 -2.8 -5.7 S9 family peptidase compare
HMPREF1078_RS17650 -2.8 -3.3 hypothetical protein compare
HMPREF1078_RS15290 -2.8 -10.8 8-amino-7-oxononanoate synthase compare
HMPREF1078_RS13110 -2.8 -2.7 gamma carbonic anhydrase family protein compare
HMPREF1078_RS13375 -2.8 -12.6 NADP-specific glutamate dehydrogenase compare
HMPREF1078_RS00060 -2.8 -2.5 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
HMPREF1078_RS14680 -2.7 -2.6 pantoate--beta-alanine ligase compare
HMPREF1078_RS14525 -2.7 -3.7 SurA N-terminal domain-containing protein compare
HMPREF1078_RS07845 -2.7 -1.9 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1078_RS05845 -2.7 -7.6 peptidoglycan DD-metalloendopeptidase family protein compare
HMPREF1078_RS10115 -2.7 -1.9 hypothetical protein compare
HMPREF1078_RS15270 -2.7 -12.9 RIP metalloprotease RseP compare
HMPREF1078_RS00505 -2.7 -2.6 RecQ family ATP-dependent DNA helicase compare
HMPREF1078_RS13550 -2.6 -10.1 aspartate kinase compare
HMPREF1078_RS07725 -2.6 -9.7 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS13050 -2.6 -5.5 primosomal protein N' compare
HMPREF1078_RS17040 -2.6 -1.8 DNA helicase RecQ compare
HMPREF1078_RS15285 -2.6 -6.7 DUF452 family protein compare
HMPREF1078_RS16620 -2.5 -10.5 hypothetical protein compare
HMPREF1078_RS10565 -2.5 -4.9 arginine repressor compare
HMPREF1078_RS07175 -2.5 -6.2 lipopolysaccharide kinase InaA family protein compare
HMPREF1078_RS09490 -2.5 -2.4 PD-(D/E)XK nuclease family protein compare
HMPREF1078_RS00190 -2.5 -9.7 OmpA family protein compare
HMPREF1078_RS13700 -2.5 -2.0 DNA translocase FtsK compare
HMPREF1078_RS11135 -2.4 -1.7 hypothetical protein compare
HMPREF1078_RS17125 -2.4 -11.9 permease-like cell division protein FtsX compare
HMPREF1078_RS17480 -2.4 -16.4 glycosyltransferase compare
HMPREF1078_RS18645 -2.4 -1.2 transposase compare
HMPREF1078_RS01860 -2.4 -2.3 BatD family protein compare
HMPREF1078_RS15295 -2.4 -8.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
HMPREF1078_RS11320 -2.3 -8.1 hypothetical protein compare
HMPREF1078_RS16595 -2.3 -9.6 HD domain-containing protein compare
HMPREF1078_RS09715 -2.3 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HMPREF1078_RS10750 -2.3 -12.4 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1078_RS18150 -2.3 -13.7 polysaccharide biosynthesis/export family protein compare
HMPREF1078_RS15305 -2.3 -7.9 hypothetical protein compare
HMPREF1078_RS04825 -2.3 -8.6 decaprenyl-phosphate phosphoribosyltransferase compare
HMPREF1078_RS04660 -2.3 -1.9 FtsL-like putative cell division protein compare
HMPREF1078_RS13970 -2.3 -7.2 glucosaminidase domain-containing protein compare
HMPREF1078_RS00210 -2.3 -5.0 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS09305 -2.3 -1.9 hypothetical protein compare
HMPREF1078_RS18145 -2.2 -13.3 Wzz/FepE/Etk N-terminal domain-containing protein compare
HMPREF1078_RS15310 -2.2 -10.9 peptide MFS transporter compare
HMPREF1078_RS04805 -2.2 -7.6 UvrD-helicase domain-containing protein compare
HMPREF1078_RS07855 -2.1 -2.0 branched-chain amino acid aminotransferase compare
HMPREF1078_RS15275 -2.1 -8.1 dethiobiotin synthase compare
HMPREF1078_RS14660 -2.1 -11.8 glycosyltransferase compare
HMPREF1078_RS04365 -2.1 -3.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Parabacteroides merdae CL09T00C40 in carbon source experiments

For carbon source D-Mannose across organisms