Experiment set1S412 for Parabacteroides merdae CL09T00C40

Compare to:

marine_broth_2216 1 x carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS19900 -4.5 -1.7 AraC family ligand binding domain-containing protein compare
HMPREF1078_RS03100 -4.0 -3.3 hypothetical protein compare
HMPREF1078_RS04370 -3.2 -2.1 30S ribosomal protein S1 compare
HMPREF1078_RS10275 -3.0 -3.5 biopolymer transporter ExbD compare
HMPREF1078_RS14615 -2.9 -2.0 tetratricopeptide repeat protein compare
HMPREF1078_RS15105 -2.5 -1.7 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1078_RS07160 -2.5 -3.8 DUF4254 domain-containing protein compare
HMPREF1078_RS01830 -2.4 -1.6 MoxR family ATPase compare
HMPREF1078_RS05545 -2.3 -9.4 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS05920 -2.3 -3.1 RNA polymerase factor sigma-54 compare
HMPREF1078_RS07780 -2.2 -2.7 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS03090 -2.2 -9.3 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS09625 -2.2 -1.8 tRNA-Leu compare
HMPREF1078_RS07775 -2.1 -6.9 twin-arginine translocase subunit TatC compare
HMPREF1078_RS10280 -2.0 -3.1 energy transducer TonB compare
HMPREF1078_RS11820 -1.9 -5.7 M28 family peptidase compare
HMPREF1078_RS07165 -1.9 -5.1 glycosyltransferase family 9 protein compare
HMPREF1078_RS00210 -1.9 -4.5 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS13270 -1.9 -4.3 ATP-binding protein compare
HMPREF1078_RS17540 -1.9 -7.8 glycosyltransferase family 2 protein compare
HMPREF1078_RS17145 -1.9 -1.8 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1078_RS04110 -1.8 -10.4 hypothetical protein compare
HMPREF1078_RS07460 -1.8 -1.9 ABC transporter ATP-binding protein compare
HMPREF1078_RS02390 -1.8 -10.0 tetratricopeptide repeat protein compare
HMPREF1078_RS04820 -1.8 -4.3 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS17065 -1.8 -6.1 CPBP family intramembrane metalloprotease compare
HMPREF1078_RS06745 -1.8 -5.3 uroporphyrinogen-III synthase compare
HMPREF1078_RS09490 -1.8 -2.7 PD-(D/E)XK nuclease family protein compare
HMPREF1078_RS10270 -1.8 -4.6 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1078_RS07590 -1.7 -1.2 tRNA-Asp compare
HMPREF1078_RS17040 -1.7 -2.6 DNA helicase RecQ compare
HMPREF1078_RS00055 -1.7 -2.5 ferrous iron transport protein B compare
HMPREF1078_RS14525 -1.6 -4.0 SurA N-terminal domain-containing protein compare
HMPREF1078_RS05495 -1.6 -5.1 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS18645 -1.6 -1.0 transposase compare
HMPREF1078_RS04805 -1.6 -5.8 UvrD-helicase domain-containing protein compare
HMPREF1078_RS15325 -1.6 -5.9 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase compare
HMPREF1078_RS07845 -1.6 -3.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1078_RS00215 -1.6 -2.3 biotin/lipoyl-binding protein compare
HMPREF1078_RS11135 -1.6 -1.1 hypothetical protein compare
HMPREF1078_RS15110 -1.6 -1.5 electron transfer flavoprotein subunit beta/FixA family protein compare
HMPREF1078_RS05510 -1.6 -5.2 gliding motility protein GldM compare
HMPREF1078_RS14640 -1.5 -3.0 S41 family peptidase compare
HMPREF1078_RS08405 -1.5 -1.7 DUF2148 domain-containing protein compare
HMPREF1078_RS00505 -1.5 -1.7 RecQ family ATP-dependent DNA helicase compare
HMPREF1078_RS19855 -1.5 -2.2 hypothetical protein compare
HMPREF1078_RS00925 -1.4 -9.6 UpxY family transcription antiterminator compare
HMPREF1078_RS06425 -1.4 -5.1 DUF4252 domain-containing protein compare
HMPREF1078_RS16230 -1.4 -4.9 porin family protein compare
HMPREF1078_RS02855 -1.4 -2.7 hypothetical protein compare
HMPREF1078_RS07175 -1.4 -4.7 lipopolysaccharide kinase InaA family protein compare
HMPREF1078_RS13100 -1.4 -1.9 YIP1 family protein compare
HMPREF1078_RS04710 -1.4 -7.9 DUF4954 family protein compare
HMPREF1078_RS16165 -1.3 -5.8 regulatory iron-sulfur-containing complex subunit RicT compare
HMPREF1078_RS18895 -1.3 -1.3 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1078_RS13050 -1.3 -4.2 primosomal protein N' compare
HMPREF1078_RS02920 -1.3 -2.0 hypothetical protein compare
HMPREF1078_RS01595 -1.3 -2.8 glucosaminidase domain-containing protein compare
HMPREF1078_RS14555 -1.3 -4.4 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1078_RS19570 -1.2 -0.9 hypothetical protein compare
HMPREF1078_RS05115 -1.2 -2.4 helix-turn-helix domain-containing protein compare
HMPREF1078_RS11430 -1.2 -2.9 iron ABC transporter permease compare
HMPREF1078_RS16175 -1.2 -2.1 diacylglycerol kinase family lipid kinase compare
HMPREF1078_RS15845 -1.2 -3.5 copper homeostasis protein CutC compare
HMPREF1078_RS04470 -1.2 -1.9 DUF4248 domain-containing protein compare
HMPREF1078_RS19575 -1.2 -1.9 hypothetical protein compare
HMPREF1078_RS05870 -1.2 -3.9 PglZ domain-containing protein compare
HMPREF1078_RS13020 -1.2 -9.2 cell surface protein SprA compare
HMPREF1078_RS11260 -1.2 -4.0 OmpH family outer membrane protein compare
HMPREF1078_RS05505 -1.1 -3.8 gliding motility protein GldL compare
HMPREF1078_RS15280 -1.1 -3.6 malonyl-ACP O-methyltransferase BioC compare
HMPREF1078_RS13315 -1.1 -2.7 crossover junction endodeoxyribonuclease RuvC compare
HMPREF1078_RS18130 -1.1 -5.5 oligosaccharide flippase family protein compare
HMPREF1078_RS16215 -1.1 -5.5 preprotein translocase subunit YajC compare
HMPREF1078_RS20055 -1.1 -0.9 hypothetical protein compare
HMPREF1078_RS11005 -1.1 -7.6 tetratricopeptide repeat protein compare
HMPREF1078_RS04365 -1.1 -2.7 hypothetical protein compare
HMPREF1078_RS15460 -1.1 -5.6 DUF3078 domain-containing protein compare
HMPREF1078_RS18140 -1.0 -7.5 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
HMPREF1078_RS13175 -1.0 -1.7 hypothetical protein compare
HMPREF1078_RS06740 -1.0 -6.2 DUF4271 domain-containing protein compare
HMPREF1078_RS07755 -1.0 -3.3 outer membrane protein assembly factor BamD compare
HMPREF1078_RS14560 -1.0 -0.7 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS05500 -1.0 -4.5 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS18905 -1.0 -2.6 diacylglycerol kinase family protein compare
HMPREF1078_RS13320 -1.0 -6.1 NADP-specific glutamate dehydrogenase compare
HMPREF1078_RS00565 -1.0 -3.2 phosphatidylglycerophosphatase A compare
HMPREF1078_RS04130 -1.0 -4.3 hypothetical protein compare
HMPREF1078_RS14505 -1.0 -6.4 hypothetical protein compare
HMPREF1078_RS14295 -1.0 -5.5 SusC/RagA family TonB-linked outer membrane protein compare
HMPREF1078_RS12480 -1.0 -6.5 TonB-dependent receptor compare
HMPREF1078_RS16125 -0.9 -1.4 hypothetical protein compare
HMPREF1078_RS05855 -0.9 -4.5 tetratricopeptide repeat protein compare
HMPREF1078_RS05160 -0.9 -5.1 mannose-1-phosphate guanylyltransferase compare
HMPREF1078_RS12475 -0.9 -6.0 hypothetical protein compare
HMPREF1078_RS10160 -0.9 -4.0 OmpA family protein compare
HMPREF1078_RS13970 -0.9 -3.5 glucosaminidase domain-containing protein compare
HMPREF1078_RS08875 -0.9 -1.5 DUF1896 family protein compare
HMPREF1078_RS11090 -0.9 -3.1 6-phosphofructokinase compare
HMPREF1078_RS17005 -0.9 -4.1 DNA mismatch repair endonuclease MutL compare
HMPREF1078_RS07855 -0.9 -1.2 branched-chain amino acid aminotransferase compare
HMPREF1078_RS15270 -0.9 -4.1 RIP metalloprotease RseP compare
HMPREF1078_RS19455 -0.9 -1.0 hypothetical protein compare
HMPREF1078_RS12470 -0.9 -4.4 ABC transporter substrate-binding protein compare
HMPREF1078_RS02680 -0.9 -1.2 hypothetical protein compare
HMPREF1078_RS16710 -0.9 -3.3 chorismate synthase compare
HMPREF1078_RS12640 -0.9 -2.6 RluA family pseudouridine synthase compare
HMPREF1078_RS18115 -0.9 -5.0 glycosyltransferase family 4 protein compare
HMPREF1078_RS02130 -0.9 -3.3 hybrid sensor histidine kinase/response regulator compare
HMPREF1078_RS13730 -0.9 -2.3 porin family protein compare
HMPREF1078_RS13750 -0.9 -3.5 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS14345 -0.9 -3.3 glycine betaine ABC transporter substrate-binding protein compare
HMPREF1078_RS19445 -0.8 -2.4 hypothetical protein compare
HMPREF1078_RS10005 -0.8 -4.6 TonB-dependent receptor compare
HMPREF1078_RS11275 -0.8 -1.9 DUF6089 family protein compare
HMPREF1078_RS01860 -0.8 -0.9 BatD family protein compare
HMPREF1078_RS11335 -0.8 -0.7 tRNA-Gly compare
HMPREF1078_RS19500 -0.8 -1.9 hypothetical protein compare
HMPREF1078_RS05515 -0.8 -3.7 gliding motility protein GldN compare
HMPREF1078_RS19730 -0.8 -0.8 hypothetical protein compare
HMPREF1078_RS00960 -0.8 -1.3 V-type ATP synthase subunit D compare
HMPREF1078_RS12410 -0.8 -1.9 signal peptidase I compare
HMPREF1078_RS13835 -0.8 -1.6 MobC family plasmid mobilization relaxosome protein compare
HMPREF1078_RS14835 -0.8 -2.2 SDR family oxidoreductase compare
HMPREF1078_RS14300 -0.8 -3.7 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS03250 -0.8 -3.0 glucosaminidase domain-containing protein compare
HMPREF1078_RS16160 -0.8 -4.2 gliding motility lipoprotein GldH compare
HMPREF1078_RS14680 -0.8 -1.5 pantoate--beta-alanine ligase compare
HMPREF1078_RS07895 -0.8 -2.7 molecular chaperone DnaJ compare
HMPREF1078_RS04395 -0.8 -1.0 3-dehydroquinate synthase compare
HMPREF1078_RS15405 -0.7 -3.1 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS00030 -0.7 -3.3 HAD-IIIA family hydrolase compare
HMPREF1078_RS18710 -0.7 -1.2 DUF3873 domain-containing protein compare
HMPREF1078_RS15400 -0.7 -5.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS14085 -0.7 -1.9 lysophospholipid acyltransferase family protein compare
HMPREF1078_RS11010 -0.7 -3.9 hypothetical protein compare
HMPREF1078_RS00295 -0.7 -2.2 50S ribosomal protein L35 compare
HMPREF1078_RS09000 -0.7 -1.3 ParA family protein compare
HMPREF1078_RS16300 -0.7 -2.5 hypothetical protein compare
HMPREF1078_RS07450 -0.7 -2.1 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
HMPREF1078_RS10350 -0.7 -2.2 peptidylprolyl isomerase compare
HMPREF1078_RS09715 -0.7 -1.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HMPREF1078_RS07725 -0.7 -4.3 single-stranded-DNA-specific exonuclease RecJ compare
HMPREF1078_RS05620 -0.7 -3.8 tetratricopeptide repeat protein compare
HMPREF1078_RS11105 -0.7 -2.9 type IX secretion system protein PorQ compare
HMPREF1078_RS09295 -0.7 -0.8 DUF4133 domain-containing protein compare
HMPREF1078_RS13310 -0.7 -1.2 DUF4286 family protein compare
HMPREF1078_RS03060 -0.7 -1.8 hypothetical protein compare
HMPREF1078_RS12790 -0.7 -4.0 Lrp/AsnC ligand binding domain-containing protein compare
HMPREF1078_RS20060 -0.7 -2.2 hypothetical protein compare
HMPREF1078_RS17650 -0.7 -2.2 hypothetical protein compare
HMPREF1078_RS08660 -0.7 -3.2 glycosyltransferase family 2 protein compare
HMPREF1078_RS07905 -0.7 -2.8 PDZ domain-containing protein compare
HMPREF1078_RS13185 -0.7 -3.1 cytochrome c biogenesis protein CcdA compare
HMPREF1078_RS02510 -0.6 -2.0 NAD(P)H-dependent oxidoreductase subunit E compare
HMPREF1078_RS01510 -0.6 -2.5 DapH/DapD/GlmU-related protein compare
HMPREF1078_RS08925 -0.6 -1.4 helix-turn-helix domain-containing protein compare
HMPREF1078_RS09945 -0.6 -0.7 tRNA-Ser compare
HMPREF1078_RS19590 -0.6 -0.6 hypothetical protein compare
HMPREF1078_RS00555 -0.6 -3.3 CDP-alcohol phosphatidyltransferase family protein compare
HMPREF1078_RS20035 -0.6 -1.9 tyrosine-type recombinase/integrase compare
HMPREF1078_RS14620 -0.6 -2.3 DNA replication and repair protein RecF compare
HMPREF1078_RS01080 -0.6 -2.8 tRNA guanosine(34) transglycosylase Tgt compare
HMPREF1078_RS13915 -0.6 -3.8 tetratricopeptide repeat protein compare
HMPREF1078_RS11930 -0.6 -1.8 VOC family protein compare
HMPREF1078_RS08555 -0.6 -1.7 DUF3795 domain-containing protein compare
HMPREF1078_RS13810 -0.6 -1.7 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS14165 -0.6 -1.2 Rne/Rng family ribonuclease compare
HMPREF1078_RS00930 -0.6 -2.5 cobyric acid synthase compare
HMPREF1078_RS19610 -0.6 -1.8 hypothetical protein compare
HMPREF1078_RS17480 -0.6 -5.1 glycosyltransferase compare
HMPREF1078_RS04840 -0.6 -4.3 type IX secretion system sortase PorU compare
HMPREF1078_RS04355 -0.6 -2.0 hypothetical protein compare
HMPREF1078_RS04510 -0.6 -3.6 Gfo/Idh/MocA family oxidoreductase compare
HMPREF1078_RS15315 -0.6 -3.4 DUF4831 family protein compare
HMPREF1078_RS01295 -0.6 -2.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
HMPREF1078_RS18125 -0.6 -2.9 LicD family protein compare
HMPREF1078_RS13545 -0.6 -3.8 diaminopimelate decarboxylase compare
HMPREF1078_RS18135 -0.6 -3.7 ornithine cyclodeaminase compare
HMPREF1078_RS11545 -0.6 -3.5 S41 family peptidase compare
HMPREF1078_RS06175 -0.6 -1.0 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1078_RS10560 -0.6 -2.7 M48 family metallopeptidase compare
HMPREF1078_RS08385 -0.6 -2.4 hypothetical protein compare
HMPREF1078_RS19910 -0.6 -2.0 UDP-2,3-diacylglucosamine diphosphatase compare
HMPREF1078_RS17435 -0.6 -3.5 UDP-glucose/GDP-mannose dehydrogenase family protein compare
HMPREF1078_RS02910 -0.6 -1.7 hypothetical protein compare
HMPREF1078_RS08975 -0.6 -1.4 ATP-binding protein compare
HMPREF1078_RS02175 -0.5 -3.2 patatin-like phospholipase family protein compare
HMPREF1078_RS16655 -0.5 -0.6 3-isopropylmalate dehydratase small subunit compare
HMPREF1078_RS01905 -0.5 -2.4 hemolysin III family protein compare
HMPREF1078_RS09710 -0.5 -2.0 cobyrinate a,c-diamide synthase compare
HMPREF1078_RS17490 -0.5 -4.3 FdtA/QdtA family cupin domain-containing protein compare
HMPREF1078_RS14670 -0.5 -4.6 DUF4270 domain-containing protein compare
HMPREF1078_RS06560 -0.5 -4.5 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS04930 -0.5 -1.5 DNA repair protein RadC compare
HMPREF1078_RS14945 -0.5 -1.7 DUF1282 family protein compare
HMPREF1078_RS12245 -0.5 -1.6 ABC transporter ATP-binding protein compare
HMPREF1078_RS01815 -0.5 -3.3 30S ribosomal protein S12 methylthiotransferase RimO compare
HMPREF1078_RS19190 -0.5 -2.3 MBL fold metallo-hydrolase compare
HMPREF1078_RS17485 -0.5 -4.6 glycosyl transferase compare


Specific Phenotypes

None in this experiment

For Parabacteroides merdae CL09T00C40 in carbon source complex media experiments

For carbon source complex media marine_broth_2216 across organisms