Experiment set1S408 for Parabacteroides merdae CL09T00C40

Compare to:

Pectin from citrus peel; autoclaved 2.5 mg/mL carbon source

200 most important genes:

  gene name fitness t score description  
HMPREF1078_RS00060 -4.2 -2.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
HMPREF1078_RS15450 -4.1 -1.3 Fe-S cluster domain-containing protein compare
HMPREF1078_RS07460 -4.1 -2.8 ABC transporter ATP-binding protein compare
HMPREF1078_RS10735 -4.0 -16.7 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase compare
HMPREF1078_RS04355 -3.9 -6.0 hypothetical protein compare
HMPREF1078_RS00960 -3.9 -3.3 V-type ATP synthase subunit D compare
HMPREF1078_RS00400 -3.7 -1.1 N-acetylmuramoyl-L-alanine amidase compare
HMPREF1078_RS01900 -3.4 -1.8 hypothetical protein compare
HMPREF1078_RS12535 -3.4 -4.2 anaerobic ribonucleoside-triphosphate reductase activating protein compare
HMPREF1078_RS08340 -3.4 -1.5 sigma-70 family RNA polymerase sigma factor compare
HMPREF1078_RS08660 -3.3 -8.1 glycosyltransferase family 2 protein compare
HMPREF1078_RS05920 -3.1 -2.1 RNA polymerase factor sigma-54 compare
HMPREF1078_RS01625 -3.1 -1.4 DUF4248 domain-containing protein compare
HMPREF1078_RS19740 -3.1 -1.6 Hpt domain-containing protein compare
HMPREF1078_RS02215 -3.0 -14.9 DUF5686 and carboxypeptidase-like regulatory domain-containing protein compare
HMPREF1078_RS04820 -2.9 -5.2 type IX secretion system outer membrane channel protein PorV compare
HMPREF1078_RS17250 -2.9 -1.2 DUF177 domain-containing protein compare
HMPREF1078_RS13270 -2.8 -5.4 ATP-binding protein compare
HMPREF1078_RS12590 -2.8 -6.2 Ig-like domain-containing protein compare
HMPREF1078_RS06425 -2.8 -6.3 DUF4252 domain-containing protein compare
HMPREF1078_RS04370 -2.8 -1.8 30S ribosomal protein S1 compare
HMPREF1078_RS14580 -2.7 -1.1 preprotein translocase subunit SecG compare
HMPREF1078_RS12470 -2.7 -7.1 ABC transporter substrate-binding protein compare
HMPREF1078_RS17750 -2.7 -10.3 long-chain fatty acid--CoA ligase compare
HMPREF1078_RS08505 -2.7 -11.6 glycosyltransferase family 39 protein compare
HMPREF1078_RS10025 -2.7 -6.8 biotin/lipoyl-binding protein compare
HMPREF1078_RS00295 -2.7 -3.1 50S ribosomal protein L35 compare
HMPREF1078_RS00940 -2.6 -3.6 hypothetical protein compare
HMPREF1078_RS05935 -2.6 -2.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
HMPREF1078_RS16520 -2.6 -1.1 tRNA-Phe compare
HMPREF1078_RS13710 -2.6 -1.7 thioredoxin-disulfide reductase compare
HMPREF1078_RS04840 -2.6 -13.1 type IX secretion system sortase PorU compare
HMPREF1078_RS14680 -2.5 -1.7 pantoate--beta-alanine ligase compare
HMPREF1078_RS02390 -2.5 -10.9 tetratricopeptide repeat protein compare
HMPREF1078_RS12475 -2.5 -11.8 hypothetical protein compare
HMPREF1078_RS16115 -2.5 -5.3 hypothetical protein compare
HMPREF1078_RS12480 -2.5 -11.4 TonB-dependent receptor compare
HMPREF1078_RS11925 -2.4 -7.9 RNA polymerase sigma-70 factor compare
HMPREF1078_RS07445 -2.4 -6.4 precorrin-4 C(11)-methyltransferase compare
HMPREF1078_RS16230 -2.4 -4.6 porin family protein compare
HMPREF1078_RS13015 -2.4 -4.3 Holliday junction branch migration protein RuvA compare
HMPREF1078_RS11275 -2.4 -3.2 DUF6089 family protein compare
HMPREF1078_RS10115 -2.4 -1.6 hypothetical protein compare
HMPREF1078_RS06805 -2.3 -8.7 phosphoribosylamine--glycine ligase compare
HMPREF1078_RS01860 -2.3 -1.6 BatD family protein compare
HMPREF1078_RS05545 -2.3 -5.0 4-hydroxy-tetrahydrodipicolinate reductase compare
HMPREF1078_RS13235 -2.3 -1.5 tRNA-Thr compare
HMPREF1078_RS17065 -2.3 -6.3 CPBP family intramembrane metalloprotease compare
HMPREF1078_RS05835 -2.3 -1.6 M20 family metallo-hydrolase compare
HMPREF1078_RS13915 -2.3 -9.1 tetratricopeptide repeat protein compare
HMPREF1078_RS16205 -2.3 -1.0 dephospho-CoA kinase compare
HMPREF1078_RS05500 -2.3 -7.5 SUMF1/EgtB/PvdO family nonheme iron enzyme compare
HMPREF1078_RS07855 -2.3 -1.6 branched-chain amino acid aminotransferase compare
HMPREF1078_RS02175 -2.3 -7.8 patatin-like phospholipase family protein compare
HMPREF1078_RS19790 -2.3 -1.0 hypothetical protein compare
HMPREF1078_RS13410 -2.2 -1.6 TonB-dependent receptor compare
HMPREF1078_RS19280 -2.2 -3.1 hypothetical protein compare
HMPREF1078_RS10005 -2.2 -9.0 TonB-dependent receptor compare
HMPREF1078_RS03020 -2.2 -2.8 hypothetical protein compare
HMPREF1078_RS15315 -2.2 -8.6 DUF4831 family protein compare
HMPREF1078_RS05495 -2.2 -5.4 type IX secretion system membrane protein PorP/SprF compare
HMPREF1078_RS18645 -2.2 -0.9 transposase compare
HMPREF1078_RS17005 -2.1 -7.1 DNA mismatch repair endonuclease MutL compare
HMPREF1078_RS13230 -2.1 -4.2 hypothetical protein compare
HMPREF1078_RS06745 -2.1 -5.3 uroporphyrinogen-III synthase compare
HMPREF1078_RS07780 -2.1 -2.0 twin-arginine translocase TatA/TatE family subunit compare
HMPREF1078_RS05910 -2.1 -6.3 nucleoside kinase compare
HMPREF1078_RS13965 -2.1 -0.9 AIR synthase-related protein compare
HMPREF1078_RS04710 -2.1 -7.9 DUF4954 family protein compare
HMPREF1078_RS07775 -2.1 -6.7 twin-arginine translocase subunit TatC compare
HMPREF1078_RS04325 -2.1 -11.3 phosphoribosylformylglycinamidine synthase compare
HMPREF1078_RS06175 -2.1 -3.1 Holliday junction branch migration DNA helicase RuvB compare
HMPREF1078_RS06560 -2.1 -13.7 two-component regulator propeller domain-containing protein compare
HMPREF1078_RS16875 -2.1 -7.4 type I methionyl aminopeptidase compare
HMPREF1078_RS04095 -2.1 -5.3 cardiolipin synthase compare
HMPREF1078_RS05870 -2.0 -5.2 PglZ domain-containing protein compare
HMPREF1078_RS05620 -2.0 -9.4 tetratricopeptide repeat protein compare
HMPREF1078_RS10030 -2.0 -11.8 sodium ion-translocating decarboxylase subunit beta compare
HMPREF1078_RS00215 -2.0 -2.3 biotin/lipoyl-binding protein compare
HMPREF1078_RS13020 -2.0 -13.7 cell surface protein SprA compare
HMPREF1078_RS13175 -2.0 -3.0 hypothetical protein compare
HMPREF1078_RS07480 -2.0 -5.5 precorrin-2 C(20)-methyltransferase compare
HMPREF1078_RS07450 -2.0 -4.4 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
HMPREF1078_RS09275 -2.0 -1.2 DUF3408 domain-containing protein compare
HMPREF1078_RS11400 -2.0 -4.6 NADPH-dependent glutamate synthase compare
HMPREF1078_RS11135 -2.0 -1.3 hypothetical protein compare
HMPREF1078_RS14525 -2.0 -3.9 SurA N-terminal domain-containing protein compare
HMPREF1078_RS03090 -1.9 -6.9 helix-turn-helix transcriptional regulator compare
HMPREF1078_RS11105 -1.9 -6.2 type IX secretion system protein PorQ compare
HMPREF1078_RS05505 -1.9 -4.6 gliding motility protein GldL compare
HMPREF1078_RS04925 -1.9 -5.5 elongation factor P compare
HMPREF1078_RS17040 -1.9 -2.6 DNA helicase RecQ compare
HMPREF1078_RS09490 -1.9 -2.9 PD-(D/E)XK nuclease family protein compare
HMPREF1078_RS08300 -1.9 -2.4 hypothetical protein compare
HMPREF1078_RS06840 -1.9 -6.4 polysaccharide deacetylase family protein compare
HMPREF1078_RS16160 -1.9 -6.4 gliding motility lipoprotein GldH compare
HMPREF1078_RS16215 -1.9 -4.8 preprotein translocase subunit YajC compare
HMPREF1078_RS05510 -1.9 -5.5 gliding motility protein GldM compare
HMPREF1078_RS17010 -1.9 -6.9 hypothetical protein compare
HMPREF1078_RS03350 -1.9 -3.4 DUF4134 domain-containing protein compare
HMPREF1078_RS07160 -1.8 -4.5 DUF4254 domain-containing protein compare
HMPREF1078_RS15270 -1.8 -7.2 RIP metalloprotease RseP compare
HMPREF1078_RS17145 -1.8 -2.1 acetyl-CoA hydrolase/transferase family protein compare
HMPREF1078_RS05560 -1.8 -4.1 DUF3108 domain-containing protein compare
HMPREF1078_RS10020 -1.8 -6.2 OadG family transporter subunit compare
HMPREF1078_RS01450 -1.8 -6.5 cytochrome c biogenesis protein CcsA compare
HMPREF1078_RS07755 -1.8 -3.9 outer membrane protein assembly factor BamD compare
HMPREF1078_RS07885 -1.8 -6.9 hypothetical protein compare
HMPREF1078_RS05515 -1.8 -5.3 gliding motility protein GldN compare
HMPREF1078_RS00925 -1.8 -6.1 UpxY family transcription antiterminator compare
HMPREF1078_RS00930 -1.8 -5.5 cobyric acid synthase compare
HMPREF1078_RS06740 -1.8 -6.5 DUF4271 domain-containing protein compare
HMPREF1078_RS00970 -1.8 -4.5 hypothetical protein compare
HMPREF1078_RS19860 -1.8 -0.8 hypothetical protein compare
HMPREF1078_RS00210 -1.8 -4.6 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS11870 -1.8 -10.9 TonB-dependent receptor compare
HMPREF1078_RS17650 -1.7 -4.0 hypothetical protein compare
HMPREF1078_RS13995 -1.7 -7.6 hypothetical protein compare
HMPREF1078_RS04110 -1.7 -7.5 hypothetical protein compare
HMPREF1078_RS01865 -1.7 -2.6 tetratricopeptide repeat protein compare
HMPREF1078_RS12725 -1.7 -5.5 DUF349 domain-containing protein compare
HMPREF1078_RS10015 -1.7 -11.6 acyl-CoA carboxylase subunit beta compare
HMPREF1078_RS09005 -1.7 -1.3 DUF3408 domain-containing protein compare
HMPREF1078_RS00955 -1.7 -5.4 V-type ATP synthase subunit B compare
HMPREF1078_RS01880 -1.7 -6.1 universal stress protein compare
HMPREF1078_RS07470 -1.7 -3.4 ABC transporter substrate-binding protein compare
HMPREF1078_RS08045 -1.7 -6.0 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
HMPREF1078_RS11430 -1.7 -3.1 iron ABC transporter permease compare
HMPREF1078_RS16790 -1.7 -5.6 S9 family peptidase compare
HMPREF1078_RS12585 -1.7 -6.2 TonB-dependent receptor compare
HMPREF1078_RS03235 -1.7 -1.3 hypothetical protein compare
HMPREF1078_RS02430 -1.7 -3.4 lipocalin-like domain-containing protein compare
HMPREF1078_RS10160 -1.7 -5.6 OmpA family protein compare
HMPREF1078_RS07705 -1.7 -5.7 sugar transferase compare
HMPREF1078_RS17075 -1.6 -4.9 ABC transporter permease compare
HMPREF1078_RS04805 -1.6 -5.9 UvrD-helicase domain-containing protein compare
HMPREF1078_RS12395 -1.6 -0.8 NVEALA domain-containing protein compare
HMPREF1078_RS01870 -1.6 -3.2 phosphatase PAP2 family protein compare
HMPREF1078_RS08930 -1.6 -1.6 DUF3945 domain-containing protein compare
HMPREF1078_RS01170 -1.6 -2.7 carbon-nitrogen hydrolase compare
HMPREF1078_RS07175 -1.6 -5.1 lipopolysaccharide kinase InaA family protein compare
HMPREF1078_RS09710 -1.6 -4.5 cobyrinate a,c-diamide synthase compare
HMPREF1078_RS17685 -1.6 -1.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
HMPREF1078_RS06970 -1.6 -4.6 sodium-dependent transporter compare
HMPREF1078_RS10270 -1.6 -3.6 MotA/TolQ/ExbB proton channel family protein compare
HMPREF1078_RS07845 -1.6 -4.4 pyruvate:ferredoxin (flavodoxin) oxidoreductase compare
HMPREF1078_RS07895 -1.6 -4.1 molecular chaperone DnaJ compare
HMPREF1078_RS00190 -1.6 -5.9 OmpA family protein compare
HMPREF1078_RS08715 -1.6 -5.4 galactokinase compare
HMPREF1078_RS09715 -1.5 -2.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HMPREF1078_RS04520 -1.5 -5.6 hypothetical protein compare
HMPREF1078_RS10745 -1.5 -6.1 MlaD family protein compare
HMPREF1078_RS04440 -1.5 -2.8 AAA family ATPase compare
HMPREF1078_RS14240 -1.5 -2.5 thioredoxin domain-containing protein compare
HMPREF1078_RS09765 -1.5 -4.4 CinA family protein compare
HMPREF1078_RS00505 -1.5 -2.6 RecQ family ATP-dependent DNA helicase compare
HMPREF1078_RS00195 -1.5 -10.4 undecaprenyl-phosphate glucose phosphotransferase compare
HMPREF1078_RS06790 -1.5 -1.8 serine acetyltransferase compare
HMPREF1078_RS13050 -1.5 -4.9 primosomal protein N' compare
HMPREF1078_RS00055 -1.5 -2.2 ferrous iron transport protein B compare
HMPREF1078_RS11865 -1.5 -6.8 RagB/SusD family nutrient uptake outer membrane protein compare
HMPREF1078_RS08855 -1.4 -2.3 helix-turn-helix domain-containing protein compare
HMPREF1078_RS10465 -1.4 -10.0 hypothetical protein compare
HMPREF1078_RS19645 -1.4 -2.5 hypothetical protein compare
HMPREF1078_RS19705 -1.4 -1.5 hypothetical protein compare
HMPREF1078_RS16175 -1.4 -3.6 diacylglycerol kinase family lipid kinase compare
HMPREF1078_RS15405 -1.4 -3.2 NAD(P)-dependent oxidoreductase compare
HMPREF1078_RS13930 -1.4 -4.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
HMPREF1078_RS17080 -1.4 -3.2 ATP-binding cassette domain-containing protein compare
HMPREF1078_RS17255 -1.4 -5.5 HAMP domain-containing sensor histidine kinase compare
HMPREF1078_RS13545 -1.3 -5.4 diaminopimelate decarboxylase compare
HMPREF1078_RS14615 -1.3 -2.3 tetratricopeptide repeat protein compare
HMPREF1078_RS15105 -1.3 -1.4 electron transfer flavoprotein subunit alpha/FixB family protein compare
HMPREF1078_RS12410 -1.3 -1.3 signal peptidase I compare
HMPREF1078_RS10470 -1.3 -9.0 glycosyltransferase compare
HMPREF1078_RS10475 -1.3 -9.9 glycosyltransferase family 4 protein compare
HMPREF1078_RS17680 -1.3 -3.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HMPREF1078_RS16710 -1.3 -4.1 chorismate synthase compare
HMPREF1078_RS15400 -1.3 -6.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
HMPREF1078_RS19760 -1.3 -1.4 N-acetylgalactosamine-6-sulfatase compare
HMPREF1078_RS02130 -1.3 -3.2 hybrid sensor histidine kinase/response regulator compare
HMPREF1078_RS16165 -1.3 -3.0 regulatory iron-sulfur-containing complex subunit RicT compare
HMPREF1078_RS00120 -1.3 -4.6 tryptophan synthase subunit alpha compare
HMPREF1078_RS15845 -1.3 -3.0 copper homeostasis protein CutC compare
HMPREF1078_RS09290 -1.3 -0.8 DUF4134 domain-containing protein compare
HMPREF1078_RS00950 -1.3 -6.4 V-type ATP synthase subunit A compare
HMPREF1078_RS07220 -1.2 -4.8 2-oxoacid:ferredoxin oxidoreductase subunit beta compare
HMPREF1078_RS00070 -1.2 -6.3 glycosyltransferase compare
HMPREF1078_RS13415 -1.2 -1.4 LuxR C-terminal-related transcriptional regulator compare
HMPREF1078_RS14200 -1.2 -1.5 shikimate dehydrogenase compare
HMPREF1078_RS11320 -1.2 -3.8 hypothetical protein compare
HMPREF1078_RS14535 -1.2 -7.6 DUF4837 family protein compare
HMPREF1078_RS00255 -1.2 -1.5 ATP-binding protein compare
HMPREF1078_RS10275 -1.2 -1.4 biopolymer transporter ExbD compare
HMPREF1078_RS06810 -1.2 -4.4 hypothetical protein compare
HMPREF1078_RS08485 -1.2 -3.8 NEW3 domain-containing protein compare
HMPREF1078_RS09315 -1.2 -3.3 DUF4141 domain-containing protein compare
HMPREF1078_RS03740 -1.2 -1.2 NAD(P)H-binding protein compare
HMPREF1078_RS09305 -1.2 -1.0 hypothetical protein compare
HMPREF1078_RS10780 -1.2 -6.3 capsule assembly Wzi family protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Pectin from citrus peel in Parabacteroides merdae CL09T00C40

For carbon source Pectin from citrus peel across organisms