Experiment set1S361 for Rhodopseudomonas palustris CGA009

Compare to:

ethyl methyl sulfide sulfur source

200 most detrimental genes:

  gene name fitness t score description  
TX73_010740 +1.6 5.1 precorrin-4 C(11)-methyltransferase compare
TX73_008715 +1.5 5.7 fluoride efflux transporter CrcB compare
TX73_009795 +1.2 2.6 phage tail assembly chaperone compare
TX73_004430 +1.2 7.2 metal ABC transporter permease compare
TX73_010165 +1.0 9.3 ATP-binding protein compare
TX73_009890 +1.0 2.8 c-type cytochrome biogenesis protein CcmI compare
TX73_018705 +1.0 5.3 energy-dependent translational throttle protein EttA compare
TX73_002315 +1.0 4.8 rRNA maturation RNase YbeY compare
TX73_016285 +1.0 1.8 serine hydrolase compare
TX73_004435 +0.9 5.6 metal ABC transporter substrate-binding protein compare
TX73_018080 +0.8 4.5 FtsH protease activity modulator HflK compare
TX73_010755 +0.8 2.1 cobalt-precorrin-6A reductase compare
TX73_011275 +0.8 4.1 MaoC family dehydratase compare
TX73_013510 +0.8 3.7 flavin reductase family protein compare
TX73_019275 +0.8 4.4 branched-chain amino acid ABC transporter permease compare
TX73_019070 +0.8 6.9 AAA family ATPase compare
TX73_010785 +0.8 1.9 FAD-dependent tricarballylate dehydrogenase TcuA compare
TX73_001460 +0.8 1.8 outer membrane lipoprotein carrier protein LolA compare
TX73_004395 +0.8 6.5 PAS domain-containing hybrid sensor histidine kinase/response regulator compare
TX73_010735 +0.8 2.9 cobyrinate a,c-diamide synthase compare
TX73_001350 +0.7 2.4 HAMP domain-containing protein compare
TX73_001250 +0.7 2.5 50S ribosomal protein L19 compare
TX73_013270 +0.7 5.3 AAA family ATPase compare
TX73_018075 +0.7 3.5 protease modulator HflC compare
TX73_012075 +0.7 2.7 hypothetical protein compare
TX73_013530 +0.7 4.2 sulfonate ABC transporter substrate-binding protein compare
TX73_013525 +0.7 4.8 FMNH2-dependent alkanesulfonate monooxygenase compare
TX73_002250 +0.7 3.8 30S ribosomal protein S15 compare
TX73_005640 +0.7 2.7 YebC/PmpR family DNA-binding transcriptional regulator compare
TX73_012195 +0.7 3.7 MetQ/NlpA family ABC transporter substrate-binding protein compare
TX73_013745 +0.7 2.7 light-harvesting antenna LH1, beta subunit compare
TX73_021115 +0.7 5.5 LysR family transcriptional regulator compare
TX73_007500 +0.7 1.6 formate/nitrite transporter family protein compare
TX73_013515 +0.7 4.6 ATP-binding cassette domain-containing protein compare
TX73_000280 +0.7 4.2 Hsp20 family protein compare
TX73_010695 +0.6 1.4 EscE/YscE/SsaE family type III secretion system needle protein co-chaperone compare
TX73_021510 +0.6 2.8 hypothetical protein compare
TX73_019065 +0.6 5.3 CpaD family pilus assembly protein compare
TX73_004425 +0.6 4.6 zinc ABC transporter ATP-binding protein AztA compare
TX73_022290 +0.6 1.4 hypothetical protein compare
TX73_017840 +0.6 3.7 enoyl-CoA hydratase/isomerase family protein compare
TX73_012270 +0.6 2.2 IS5/IS1182 family transposase compare
TX73_005810 +0.6 5.0 FAD-binding protein compare
TX73_007480 +0.6 2.5 cbb3-type cytochrome c oxidase subunit I compare
TX73_016180 +0.6 0.8 50S ribosomal protein L33 compare
TX73_024515 +0.6 3.3 molybdopterin-binding protein compare
TX73_012550 +0.6 1.3 DUF2155 domain-containing protein compare
TX73_015755 +0.6 4.2 ribonuclease D compare
TX73_019280 +0.6 2.2 branched-chain amino acid ABC transporter permease compare
TX73_000405 +0.6 1.9 bifunctional tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE/phosphotransferase compare
TX73_010770 +0.6 1.9 precorrin-8X methylmutase compare
TX73_006180 +0.5 2.3 ATP-dependent Clp protease adapter ClpS compare
TX73_010675 +0.5 1.0 DUF378 domain-containing protein compare
TX73_020595 +0.5 1.6 hypothetical protein compare
TX73_005270 +0.5 1.8 cytochrome b5-like heme/steroid binding domain-containing protein compare
TX73_006950 +0.5 2.6 TonB C-terminal domain-containing protein compare
TX73_021360 +0.5 2.3 VirB3 family type IV secretion system protein compare
TX73_010910 +0.5 2.0 flavodoxin FldA compare
TX73_020585 +0.5 2.3 cytochrome c compare
TX73_011855 +0.5 4.6 CHASE3 domain-containing protein compare
TX73_017535 +0.5 0.8 GTP cyclohydrolase I FolE compare
TX73_019060 +0.5 4.7 type II and III secretion system protein family protein compare
TX73_017730 +0.5 1.7 DUF3126 family protein compare
TX73_020475 +0.5 3.3 GDP-mannose 4,6-dehydratase compare
TX73_022170 +0.5 2.5 hypothetical protein compare
TX73_013760 +0.5 1.0 beta-1-3, beta-1-6-glucan biosynthesis protein compare
TX73_013520 +0.5 3.6 aliphatic sulfonate ABC transporter permease SsuC compare
TX73_011080 +0.5 3.3 serine hydrolase compare
TX73_005805 +0.5 3.8 FAD-linked oxidase C-terminal domain-containing protein compare
TX73_006700 +0.5 2.5 tRNA 2-thiouridine(34) synthase MnmA compare
TX73_004840 +0.5 2.4 thiamine phosphate synthase compare
TX73_003470 +0.5 2.8 4-hydroxybenzoyl-CoA reductase subunit gamma compare
TX73_024845 +0.5 3.2 phosphate ABC transporter substrate-binding protein PstS compare
TX73_013500 +0.5 1.8 hypothetical protein compare
TX73_018490 +0.5 3.6 DUF4403 family protein compare
TX73_000615 +0.5 2.2 dTDP-4-dehydrorhamnose reductase compare
TX73_021060 +0.5 3.9 hypothetical protein compare
TX73_005815 +0.4 3.6 glycolate oxidase subunit GlcF compare
TX73_020625 +0.4 1.7 NAD-dependent epimerase compare
TX73_022595 +0.4 3.8 SAM-dependent methyltransferase compare
TX73_024840 +0.4 1.4 phosphate ABC transporter permease subunit PstC compare
TX73_023205 +0.4 2.0 sulfur oxidation c-type cytochrome SoxX compare
TX73_024100 +0.4 3.1 ribulose-bisphosphate carboxylase compare
TX73_008250 +0.4 2.7 Grx4 family monothiol glutaredoxin compare
TX73_009030 +0.4 3.1 acetyl-CoA acetyltransferase compare
TX73_010750 +0.4 2.1 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
TX73_022475 +0.4 1.0 hypothetical protein compare
TX73_019090 +0.4 3.7 tetratricopeptide repeat protein compare
TX73_006960 +0.4 2.0 hypothetical protein compare
TX73_000520 +0.4 2.0 ABC transporter permease compare
TX73_012220 +0.4 3.0 nitrogenase component 1 compare
TX73_006450 +0.4 2.2 zinc ribbon domain-containing protein compare
TX73_013435 +0.4 3.1 D-amino-acid transaminase compare
TX73_009235 +0.4 2.4 DUF3124 domain-containing protein compare
TX73_012385 +0.4 2.2 hypothetical protein compare
TX73_013240 +0.4 2.4 amino acid ABC transporter substrate-binding protein compare
TX73_016885 +0.4 3.1 FAD-dependent oxidoreductase compare
TX73_013065 +0.4 2.3 hypothetical protein compare
TX73_020235 +0.4 3.3 efflux RND transporter permease subunit compare
TX73_013060 +0.4 2.0 hypothetical protein compare
TX73_003705 +0.4 2.2 cobaltochelatase subunit CobN compare
TX73_021040 +0.4 2.4 glycosyltransferase family 2 protein compare
TX73_003945 +0.4 2.0 EF-hand domain-containing protein compare
TX73_016880 +0.4 2.8 ATP-binding cassette domain-containing protein compare
TX73_003700 +0.4 2.6 cobalamin biosynthesis protein CobW compare
TX73_021550 +0.4 1.1 AsmA family protein compare
TX73_000040 +0.4 2.5 circadian clock KaiB family protein compare
TX73_023215 +0.4 1.9 thioredoxin family protein compare
TX73_020640 +0.4 3.2 nucleoside-diphosphate sugar epimerase/dehydratase compare
TX73_000570 +0.4 1.5 sulfite exporter TauE/SafE family protein compare
TX73_012160 +0.4 1.4 cupin domain-containing protein compare
TX73_004195 +0.4 3.2 hypothetical protein compare
TX73_021375 +0.4 1.9 DUF6527 family protein compare
TX73_006095 +0.4 1.3 DUF6111 family protein compare
TX73_009780 +0.4 1.5 DUF3168 domain-containing protein compare
TX73_017145 +0.4 1.9 hypothetical protein compare
TX73_018580 +0.4 2.3 hypothetical protein compare
TX73_005960 +0.4 1.5 exodeoxyribonuclease VII large subunit compare
TX73_013490 +0.4 1.8 hypothetical protein compare
TX73_006105 +0.4 2.0 DUF2158 domain-containing protein compare
TX73_004390 +0.4 1.9 response regulator transcription factor compare
TX73_010765 +0.4 1.0 precorrin-2 C(20)-methyltransferase compare
TX73_020880 +0.4 2.0 hypothetical protein compare
TX73_015985 +0.4 1.2 CvpA family protein compare
TX73_012150 +0.4 2.1 PLP-dependent transferase compare
TX73_013275 +0.4 2.3 hypothetical protein compare
TX73_013415 +0.4 2.9 nitrogen regulation protein NR(II) compare
TX73_019685 +0.4 2.3 xanthine dehydrogenase family protein subunit M compare
TX73_008030 +0.4 2.1 carbon-nitrogen hydrolase family protein compare
TX73_008845 +0.4 2.2 YkgJ family cysteine cluster protein compare
TX73_002580 +0.4 1.6 GNAT family N-acetyltransferase compare
TX73_002045 +0.4 0.7 phosphatase PAP2 family protein compare
TX73_002130 +0.3 2.2 GNAT family N-acetyltransferase compare
TX73_006625 +0.3 1.3 type II toxin-antitoxin system RelE/ParE family toxin compare
TX73_012405 +0.3 1.3 DUF2149 domain-containing protein compare
TX73_017430 +0.3 1.8 hypothetical protein compare
TX73_021350 +0.3 2.7 P-type conjugative transfer protein TrbJ compare
TX73_021140 +0.3 3.1 Flp pilus assembly protein CpaB compare
TX73_018520 +0.3 0.6 FAD-dependent oxidoreductase compare
TX73_003745 +0.3 2.9 HoxN/HupN/NixA family nickel/cobalt transporter compare
TX73_023910 +0.3 2.7 FAD-dependent monooxygenase compare
TX73_010450 +0.3 2.2 hypothetical protein compare
TX73_007170 +0.3 1.9 carbohydrate ABC transporter permease compare
TX73_006515 +0.3 1.7 hypothetical protein compare
TX73_021020 +0.3 2.5 glycosyltransferase family 2 protein compare
TX73_002255 +0.3 3.0 tRNA pseudouridine(55) synthase TruB compare
TX73_024620 +0.3 1.6 response regulator compare
TX73_011215 +0.3 1.8 GNAT family N-acetyltransferase compare
TX73_005410 +0.3 1.7 hypothetical protein compare
TX73_007215 +0.3 2.0 urea carboxylase-associated family protein compare
TX73_002510 +0.3 2.1 enoyl-CoA hydratase compare
TX73_010730 +0.3 2.0 uroporphyrinogen-III C-methyltransferase compare
TX73_022550 +0.3 1.3 hypothetical protein compare
TX73_017490 +0.3 2.8 DUF2336 domain-containing protein compare
TX73_007795 +0.3 0.8 hypothetical protein compare
TX73_012565 +0.3 2.7 leucyl/phenylalanyl-tRNA--protein transferase compare
TX73_011500 +0.3 0.9 putative entry exclusion protein TrbK-alt compare
TX73_012140 +0.3 2.4 nitrogenase component 1 compare
TX73_010980 +0.3 1.9 hypothetical protein compare
TX73_012655 +0.3 2.2 biotin transporter BioY compare
TX73_019285 +0.3 2.5 ABC transporter substrate-binding protein compare
TX73_014140 +0.3 1.1 transcription antitermination factor NusB compare
TX73_006305 +0.3 2.0 2-oxoacid:acceptor oxidoreductase family protein compare
TX73_003310 +0.3 1.4 hypothetical protein compare
TX73_019055 +0.3 2.3 Flp pilus assembly protein CpaB compare
TX73_011940 +0.3 2.2 iron ABC transporter permease compare
TX73_017220 +0.3 1.1 curli assembly protein CsgF compare
TX73_003665 +0.3 2.2 zinc ribbon domain-containing protein compare
TX73_022380 +0.3 1.9 hypothetical protein compare
TX73_020240 +0.3 2.2 efflux RND transporter periplasmic adaptor subunit compare
TX73_024745 +0.3 1.4 hypothetical protein compare
TX73_022240 +0.3 1.0 light-harvesting protein compare
TX73_018805 +0.3 2.6 amidase family protein compare
TX73_007110 +0.3 1.0 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
TX73_018570 +0.3 1.7 hypothetical protein compare
TX73_000575 +0.3 2.1 aldehyde dehydrogenase family protein compare
TX73_019085 +0.3 2.3 type II secretion system F family protein compare
TX73_024465 +0.3 1.9 thioesterase family protein compare
TX73_000470 +0.3 2.1 hypothetical protein compare
TX73_023680 +0.3 1.0 MaoC family dehydratase compare
TX73_002270 +0.3 0.8 RNA-binding protein compare
TX73_004130 +0.3 1.4 DUF6460 domain-containing protein compare
TX73_023710 +0.3 1.7 hotdog domain-containing protein compare
TX73_013095 +0.3 2.5 glycosyltransferase family 4 protein compare
TX73_000455 +0.3 1.7 hypothetical protein compare
TX73_019185 +0.3 1.4 GIY-YIG nuclease family protein compare
TX73_021790 +0.3 1.0 hypothetical protein compare
TX73_017850 +0.3 0.9 type II toxin-antitoxin system VapC family toxin compare
TX73_019330 +0.3 1.9 aminobacteriohopanetriol synthase HpnO compare
TX73_012210 +0.3 1.6 PLP-dependent transferase compare
TX73_019550 +0.3 2.4 efflux RND transporter periplasmic adaptor subunit compare
TX73_009015 +0.3 1.5 hydroxypyruvate isomerase family protein compare
TX73_003660 +0.3 1.9 divalent-cation tolerance protein CutA compare
TX73_014230 +0.3 2.2 hypothetical protein compare
TX73_019905 +0.3 2.6 cation:proton antiporter compare
TX73_015460 +0.3 1.8 hypothetical protein compare
TX73_017045 +0.3 2.5 substrate-binding protein compare
TX73_010775 +0.3 1.5 hypothetical protein compare
TX73_017035 +0.3 1.8 branched-chain amino acid ABC transporter permease compare
TX73_020750 +0.3 0.9 30S ribosomal protein S21 compare


Specific Phenotypes

None in this experiment

For Rhodopseudomonas palustris CGA009 in sulfur source experiments

For sulfur source L-Malic acid disodium salt across organisms