Experiment set1S338 for Rhodopseudomonas palustris CGA009

Compare to:

Pimelic acid carbon source; anaerobic

200 most important genes:

  gene name fitness t score description  
TX73_019180 -3.7 -3.4 methionine synthase compare
TX73_024775 -3.4 -16.0 O-succinylhomoserine sulfhydrylase compare
TX73_019175 -3.3 -6.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_015245 -3.2 -2.1 NADH-quinone oxidoreductase subunit NuoI compare
TX73_019145 -3.2 -8.5 prephenate dehydratase compare
TX73_001320 -3.1 -18.6 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_005330 -3.0 -4.0 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_018140 -2.8 -3.7 ribbon-helix-helix domain-containing protein compare
TX73_024675 -2.4 -2.9 FAD-binding protein compare
TX73_008350 -2.3 -7.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
TX73_012525 -2.3 -6.1 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_005625 -2.3 -11.0 acyl-CoA dehydrogenase compare
TX73_012445 -2.0 -1.6 hypothetical protein compare
TX73_003880 -1.6 -4.8 phosphoadenylyl-sulfate reductase compare
TX73_004835 -1.6 -7.1 tetratricopeptide repeat protein compare
TX73_019235 -1.6 -6.4 pimeloyl-CoA dehydrogenase small subunit compare
TX73_022590 -1.6 -1.8 prolipoprotein diacylglyceryl transferase compare
TX73_019240 -1.5 -9.2 pimeloyl-CoA dehydrogenase large subunit compare
TX73_001570 -1.5 -2.3 protein-export chaperone SecB compare
TX73_012420 -1.4 -1.6 hypothetical protein compare
TX73_003885 -1.3 -9.0 sulfate adenylyltransferase subunit 2 compare
TX73_021835 -1.3 -3.5 DUF934 domain-containing protein compare
TX73_021840 -1.3 -6.0 nitrite/sulfite reductase compare
TX73_013960 -1.3 -3.9 pyridoxine 5'-phosphate synthase compare
TX73_007345 -1.2 -2.2 hypothetical protein compare
TX73_024670 -1.2 -5.2 3-hydroxybutyryl-CoA dehydrogenase compare
TX73_018540 -1.2 -9.3 phosphomethylpyrimidine synthase ThiC compare
TX73_015855 -1.1 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_000395 -1.1 -1.6 nucleotidyltransferase family protein compare
TX73_013760 -1.1 -1.5 beta-1-3, beta-1-6-glucan biosynthesis protein compare
TX73_007415 -1.1 -1.8 hypothetical protein compare
TX73_013355 -1.1 -7.9 protein-L-isoaspartate O-methyltransferase compare
TX73_021975 -1.0 -4.8 CBS domain-containing protein compare
TX73_014750 -1.0 -3.0 Sec-independent protein translocase protein TatB compare
TX73_021105 -1.0 -5.9 Lrp/AsnC family transcriptional regulator compare
TX73_005530 -1.0 -2.9 FAD-binding oxidoreductase compare
TX73_012935 -1.0 -3.5 LL-diaminopimelate aminotransferase compare
TX73_014645 -1.0 -8.0 phytoene/squalene synthase family protein compare
TX73_003890 -1.0 -7.0 adenylyl-sulfate kinase compare
TX73_018875 -0.9 -5.5 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_014180 -0.9 -2.6 outer membrane protein assembly factor BamE compare
TX73_002745 -0.9 -5.2 polyhydroxyalkanoate synthesis repressor PhaR compare
TX73_024110 -0.9 -0.9 transketolase compare
TX73_005435 -0.9 -4.2 hypothetical protein compare
TX73_014140 -0.9 -2.3 transcription antitermination factor NusB compare
TX73_001065 -0.8 -0.9 heme exporter protein CcmD compare
TX73_002960 -0.8 -2.6 ActR/PrrA/RegA family redox response regulator transcription factor compare
TX73_018335 -0.8 -2.7 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
TX73_018925 -0.8 -2.7 DUF6496 domain-containing protein compare
TX73_002300 -0.8 -2.5 helix-turn-helix domain-containing protein compare
TX73_010535 -0.7 -4.6 biotin synthase BioB compare
TX73_017010 -0.7 -0.9 TetR/AcrR family transcriptional regulator compare
TX73_015270 -0.7 -2.1 NADH-quinone oxidoreductase subunit NuoE compare
TX73_022860 -0.7 -2.3 glycerol-3-phosphate dehydrogenase compare
TX73_010300 -0.7 -1.5 hypothetical protein compare
TX73_005760 -0.7 -6.0 EAL domain-containing protein compare
TX73_002045 -0.7 -1.9 phosphatase PAP2 family protein compare
TX73_022015 -0.7 -3.5 response regulator compare
TX73_010825 -0.7 -0.9 XapX domain-containing protein compare
TX73_013665 -0.7 -2.4 L-2-amino-thiazoline-4-carboxylic acid hydrolase compare
TX73_004390 -0.7 -3.1 response regulator transcription factor compare
TX73_016285 -0.7 -1.2 serine hydrolase compare
TX73_002805 -0.7 -1.4 disulfide bond formation protein B compare
TX73_017535 -0.6 -0.7 GTP cyclohydrolase I FolE compare
TX73_011020 -0.6 -1.1 c-type cytochrome compare
TX73_018340 -0.6 -2.3 N-acetylmuramoyl-L-alanine amidase compare
TX73_000335 -0.6 -1.9 30S ribosomal protein S1 compare
TX73_003845 -0.6 -2.0 high potential iron sulfur protein compare
TX73_023355 -0.6 -4.2 hypothetical protein compare
TX73_014430 -0.6 -1.4 DUF3309 family protein compare
TX73_002315 -0.6 -2.9 rRNA maturation RNase YbeY compare
TX73_024230 -0.6 -2.2 trehalose-phosphatase compare
TX73_024970 -0.6 -2.7 hypothetical protein compare
TX73_000405 -0.6 -2.3 bifunctional tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE/phosphotransferase compare
TX73_020290 -0.6 -2.1 flagellar biosynthesis repressor FlbT compare
TX73_016090 -0.6 -0.8 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC compare
TX73_021845 -0.6 -1.4 DUF2849 domain-containing protein compare
TX73_018135 -0.6 -1.7 DUF4169 family protein compare
TX73_009180 -0.6 -1.5 DUF3237 domain-containing protein compare
TX73_016155 -0.6 -2.0 type I DNA topoisomerase compare
TX73_019780 -0.6 -1.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
TX73_003075 -0.6 -2.5 (deoxy)nucleoside triphosphate pyrophosphohydrolase compare
TX73_010460 -0.6 -2.8 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
TX73_021115 -0.6 -4.1 LysR family transcriptional regulator compare
TX73_024995 -0.5 -3.4 ABC transporter ATP-binding protein compare
TX73_005055 -0.5 -3.6 IclR family transcriptional regulator compare
TX73_004850 -0.5 -1.8 type II toxin-antitoxin system PemK/MazF family toxin compare
TX73_013945 -0.5 -2.7 NYN domain-containing protein compare
TX73_000115 -0.5 -2.9 2-hydroxychromene-2-carboxylate isomerase compare
TX73_007900 -0.5 -3.5 transcriptional regulator PpsR compare
TX73_005630 -0.5 -2.1 MBL fold metallo-hydrolase compare
TX73_018695 -0.5 -2.8 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_022515 -0.5 -2.0 DUF1902 domain-containing protein compare
TX73_001420 -0.5 -3.1 P-II family nitrogen regulator compare
TX73_010530 -0.5 -2.4 NUDIX hydrolase compare
TX73_020750 -0.5 -1.6 30S ribosomal protein S21 compare
TX73_010685 -0.5 -1.9 response regulator compare
TX73_000980 -0.5 -2.7 2-oxoglutarate dehydrogenase E1 component compare
TX73_001350 -0.5 -1.7 HAMP domain-containing protein compare
TX73_000835 -0.5 -2.1 hypothetical protein compare
TX73_009780 -0.5 -2.1 DUF3168 domain-containing protein compare
TX73_021000 -0.5 -3.2 NAD-dependent epimerase/dehydratase family protein compare
TX73_007475 -0.5 -0.7 cytochrome c compare
TX73_002535 -0.5 -2.7 CarD family transcriptional regulator compare
TX73_006630 -0.5 -1.9 transposase compare
TX73_023365 -0.5 -2.4 hypothetical protein compare
TX73_003870 -0.5 -2.0 sulfate ABC transporter permease subunit CysT compare
TX73_017210 -0.5 -2.3 curli-like amyloid fiber formation chaperone CsgH compare
TX73_020450 -0.5 -2.0 DUF2147 domain-containing protein compare
TX73_003875 -0.5 -2.1 sulfate ABC transporter substrate-binding protein compare
TX73_002625 -0.4 -2.8 site-specific tyrosine recombinase XerD compare
TX73_008135 -0.4 -2.7 YcjX family protein compare
TX73_010985 -0.4 -1.5 hypothetical protein compare
TX73_023110 -0.4 -1.8 pyridoxal-dependent decarboxylase compare
TX73_006185 -0.4 -1.7 DUF1194 domain-containing protein compare
TX73_002780 -0.4 -2.1 acetyl-CoA hydrolase/transferase family protein compare
TX73_007110 -0.4 -1.5 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein compare
TX73_013975 -0.4 -1.1 ribonuclease III compare
TX73_009990 -0.4 -0.8 ATP-binding protein compare
TX73_020925 -0.4 -1.9 hypothetical protein compare
TX73_014735 -0.4 -1.2 hypothetical protein compare
TX73_001340 -0.4 -3.2 heme biosynthesis HemY N-terminal domain-containing protein compare
TX73_012530 -0.4 -2.9 DJ-1/PfpI family protein compare
TX73_015590 -0.4 -0.9 light-harvesting protein compare
TX73_025000 -0.4 -3.6 FtsX-like permease family protein compare
TX73_004925 -0.4 -3.0 hypothetical protein compare
TX73_012405 -0.4 -1.4 DUF2149 domain-containing protein compare
TX73_009785 -0.4 -2.0 phage major tail protein, TP901-1 family compare
TX73_007285 -0.4 -3.1 CusA/CzcA family heavy metal efflux RND transporter compare
TX73_013425 -0.4 -1.6 HAMP domain-containing histidine kinase compare
TX73_002755 -0.4 -1.8 beta-ketoacyl-ACP reductase compare
TX73_010245 -0.4 -1.2 AraC family transcriptional regulator compare
TX73_009400 -0.4 -1.4 hypothetical protein compare
TX73_007215 -0.4 -2.0 urea carboxylase-associated family protein compare
TX73_010190 -0.4 -1.4 TRAP transporter small permease subunit compare
TX73_017730 -0.4 -1.3 DUF3126 family protein compare
TX73_013065 -0.4 -2.1 hypothetical protein compare
TX73_010270 -0.4 -0.6 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_015240 -0.4 -0.7 NADH-quinone oxidoreductase subunit J compare
TX73_021860 -0.4 -0.9 CsbD family protein compare
TX73_019930 -0.4 -2.2 glycine cleavage system protein GcvH compare
TX73_015410 -0.4 -1.4 dethiobiotin synthase compare
TX73_008570 -0.4 -1.2 bacteriochlorophyll 4-vinyl reductase compare
TX73_006830 -0.4 -2.1 cupin domain-containing protein compare
TX73_017785 -0.4 -1.0 hypothetical protein compare
TX73_009435 -0.4 -2.9 methylmalonyl-CoA mutase compare
TX73_004685 -0.4 -2.3 hypothetical protein compare
TX73_005685 -0.4 -1.7 nuclear transport factor 2 family protein compare
TX73_021850 -0.4 -2.3 siroheme synthase CysG compare
TX73_002890 -0.4 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
TX73_009970 -0.4 -1.1 hypothetical protein compare
TX73_006085 -0.4 -2.7 DUF1285 domain-containing protein compare
TX73_011170 -0.4 -1.5 co-chaperone GroES compare
TX73_002500 -0.4 -2.3 enoyl-CoA hydratase/isomerase family protein compare
TX73_007175 -0.4 -2.2 ABC transporter ATP-binding protein compare
TX73_014160 -0.4 -1.2 hypothetical protein compare
TX73_015935 -0.4 -1.7 50S ribosomal protein L9 compare
TX73_001075 -0.4 -1.3 helix-hairpin-helix domain-containing protein compare
TX73_022190 -0.4 -2.8 BLUF domain-containing protein compare
TX73_014235 -0.4 -1.7 hypothetical protein compare
TX73_009050 -0.4 -1.3 DUF6285 domain-containing protein compare
TX73_003830 -0.4 -2.1 MoxR family ATPase compare
TX73_010065 -0.4 -1.1 DUF1656 domain-containing protein compare
TX73_009445 -0.4 -3.1 methylmalonyl-CoA mutase subunit beta compare
TX73_020875 -0.4 -2.5 ABC transporter substrate-binding protein compare
TX73_021500 -0.4 -2.2 ribose-phosphate pyrophosphokinase compare
TX73_010125 -0.4 -2.2 hypothetical protein compare
TX73_005395 -0.4 -1.7 DUF3096 domain-containing protein compare
TX73_005145 -0.4 -1.8 hypothetical protein compare
TX73_019425 -0.4 -2.2 cache domain-containing protein compare
TX73_013475 -0.4 -2.2 peptidylprolyl isomerase compare
TX73_006785 -0.4 -1.1 DUF3551 domain-containing protein compare
TX73_006990 -0.4 -1.5 hypothetical protein compare
TX73_025005 -0.4 -2.5 lipocalin-like domain-containing protein compare
TX73_010935 -0.4 -1.3 hypothetical protein compare
TX73_006780 -0.4 -1.8 sensor histidine kinase compare
TX73_005985 -0.4 -2.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
TX73_006945 -0.4 -1.0 hypothetical protein compare
TX73_012760 -0.4 -0.6 SUF system Fe-S cluster assembly protein compare
TX73_003000 -0.4 -1.1 hypothetical protein compare
TX73_013215 -0.4 -1.4 glycosyltransferase family 39 protein compare
TX73_010165 -0.4 -2.8 ATP-binding protein compare
TX73_006030 -0.4 -2.3 response regulator compare
TX73_008130 -0.4 -0.8 TIGR01620 family protein compare
TX73_005980 -0.4 -3.0 pseudouridine synthase compare
TX73_017375 -0.3 -1.6 hypothetical protein compare
TX73_008360 -0.3 -1.3 hybrid sensor histidine kinase/response regulator compare
TX73_018035 -0.3 -1.2 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_015885 -0.3 -1.9 endolytic transglycosylase MltG compare
TX73_013340 -0.3 -1.9 hypothetical protein compare
TX73_011270 -0.3 -2.1 NADPH:quinone oxidoreductase family protein compare
TX73_007970 -0.3 -1.7 hypothetical protein compare
TX73_001470 -0.3 -1.9 cyclic nucleotide-binding domain-containing protein compare
TX73_000960 -0.3 -1.7 dihydrolipoyl dehydrogenase compare
TX73_005640 -0.3 -1.4 YebC/PmpR family DNA-binding transcriptional regulator compare
TX73_007535 -0.3 -1.4 GntR family transcriptional regulator compare
TX73_023835 -0.3 -2.3 lipopolysaccharide biosynthesis protein compare
TX73_012895 -0.3 -1.6 RidA family protein compare
TX73_010225 -0.3 -2.8 3-deoxy-7-phosphoheptulonate synthase class II compare
TX73_024885 -0.3 -2.6 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB compare


Specific Phenotypes

None in this experiment

For Rhodopseudomonas palustris CGA009 in carbon source experiments

For carbon source Pimelic acid across organisms