Experiment set1S318 for Rhodopseudomonas palustris CGA009

Compare to:

Butyric Acid carbon source; anaerobic

200 most important genes:

  gene name fitness t score description  
TX73_024775 -4.5 -18.0 O-succinylhomoserine sulfhydrylase compare
TX73_019175 -4.1 -4.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
TX73_019145 -3.7 -6.6 prephenate dehydratase compare
TX73_018875 -3.5 -10.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
TX73_001320 -3.5 -17.0 NAD(P)-dependent glycerol-3-phosphate dehydrogenase compare
TX73_017750 -3.2 -7.6 zinc-finger domain-containing protein compare
TX73_018135 -3.0 -3.0 DUF4169 family protein compare
TX73_024230 -2.9 -5.8 trehalose-phosphatase compare
TX73_018140 -2.9 -4.3 ribbon-helix-helix domain-containing protein compare
TX73_013960 -2.7 -5.0 pyridoxine 5'-phosphate synthase compare
TX73_022015 -2.6 -8.7 response regulator compare
TX73_018540 -2.6 -16.9 phosphomethylpyrimidine synthase ThiC compare
TX73_005530 -2.6 -3.9 FAD-binding oxidoreductase compare
TX73_010270 -2.6 -2.7 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_015855 -2.4 -3.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
TX73_021975 -2.1 -7.2 CBS domain-containing protein compare
TX73_009990 -2.0 -1.9 ATP-binding protein compare
TX73_012525 -1.9 -5.0 NADH:ubiquinone oxidoreductase subunit NDUFA12 compare
TX73_008350 -1.9 -7.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
TX73_021105 -1.8 -9.5 Lrp/AsnC family transcriptional regulator compare
TX73_017010 -1.7 -2.9 TetR/AcrR family transcriptional regulator compare
TX73_012420 -1.6 -1.6 hypothetical protein compare
TX73_021000 -1.6 -9.6 NAD-dependent epimerase/dehydratase family protein compare
TX73_018705 -1.6 -5.0 energy-dependent translational throttle protein EttA compare
TX73_022760 -1.4 -3.8 metallophosphoesterase compare
TX73_010535 -1.4 -8.0 biotin synthase BioB compare
TX73_005330 -1.3 -3.3 electron transfer flavoprotein-ubiquinone oxidoreductase compare
TX73_004935 -1.3 -8.7 acyl-CoA dehydrogenase compare
TX73_016325 -1.3 -2.9 hypothetical protein compare
TX73_022415 -1.3 -6.6 SulP family inorganic anion transporter compare
TX73_020625 -1.2 -4.3 NAD-dependent epimerase compare
TX73_007900 -1.2 -8.4 transcriptional regulator PpsR compare
TX73_007345 -1.2 -1.6 hypothetical protein compare
TX73_010695 -1.2 -1.7 EscE/YscE/SsaE family type III secretion system needle protein co-chaperone compare
TX73_015245 -1.2 -1.4 NADH-quinone oxidoreductase subunit NuoI compare
TX73_015405 -1.1 -4.5 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
TX73_009360 -1.1 -2.0 hypothetical protein compare
TX73_019180 -1.1 -1.0 methionine synthase compare
TX73_021835 -1.1 -3.9 DUF934 domain-containing protein compare
TX73_024675 -1.1 -1.4 FAD-binding protein compare
TX73_001250 -1.1 -2.4 50S ribosomal protein L19 compare
TX73_014645 -1.0 -7.6 phytoene/squalene synthase family protein compare
TX73_015270 -1.0 -4.6 NADH-quinone oxidoreductase subunit NuoE compare
TX73_024595 -1.0 -1.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
TX73_015410 -1.0 -2.6 dethiobiotin synthase compare
TX73_000395 -1.0 -1.5 nucleotidyltransferase family protein compare
TX73_018925 -1.0 -3.1 DUF6496 domain-containing protein compare
TX73_005630 -1.0 -4.6 MBL fold metallo-hydrolase compare
TX73_002250 -1.0 -2.4 30S ribosomal protein S15 compare
TX73_021845 -0.9 -1.7 DUF2849 domain-containing protein compare
TX73_019280 -0.9 -2.5 branched-chain amino acid ABC transporter permease compare
TX73_018170 -0.9 -1.2 type II toxin-antitoxin system HicB family antitoxin compare
TX73_019265 -0.9 -3.3 ABC transporter ATP-binding protein compare
TX73_024565 -0.9 -7.6 glycogen/starch/alpha-glucan phosphorylase compare
TX73_020450 -0.9 -3.8 DUF2147 domain-containing protein compare
TX73_002745 -0.9 -5.1 polyhydroxyalkanoate synthesis repressor PhaR compare
TX73_013225 -0.9 -2.5 glycosyltransferase family 2 protein compare
TX73_003225 -0.8 -2.4 tRNA pseudouridine(38-40) synthase TruA compare
TX73_018870 -0.8 -6.6 4-alpha-glucanotransferase compare
TX73_024670 -0.8 -4.4 3-hydroxybutyryl-CoA dehydrogenase compare
TX73_014755 -0.8 -1.2 twin-arginine translocase TatA/TatE family subunit compare
TX73_007485 -0.8 -2.2 CbbQ/NirQ/NorQ/GpvN family protein compare
TX73_015415 -0.8 -4.2 8-amino-7-oxononanoate synthase compare
TX73_001000 -0.8 -6.3 cell division protein ZapE compare
TX73_004430 -0.8 -4.4 metal ABC transporter permease compare
TX73_012070 -0.8 -1.3 YtxH domain-containing protein compare
TX73_017865 -0.8 -4.8 TetR/AcrR family transcriptional regulator compare
TX73_017130 -0.8 -1.6 hypothetical protein compare
TX73_009115 -0.8 -5.7 phosphoenolpyruvate carboxylase compare
TX73_011820 -0.8 -5.1 peptide chain release factor 3 compare
TX73_010825 -0.8 -1.0 XapX domain-containing protein compare
TX73_018335 -0.8 -2.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
TX73_019960 -0.7 -1.9 hypothetical protein compare
TX73_013760 -0.7 -1.1 beta-1-3, beta-1-6-glucan biosynthesis protein compare
TX73_001795 -0.7 -3.2 sulfate transporter family protein compare
TX73_006140 -0.7 -5.4 SDR family NAD(P)-dependent oxidoreductase compare
TX73_000270 -0.7 -3.1 PTS IIA-like nitrogen regulatory protein PtsN compare
TX73_021900 -0.7 -4.0 sigma-70 family RNA polymerase sigma factor compare
TX73_013475 -0.7 -4.2 peptidylprolyl isomerase compare
TX73_022860 -0.7 -2.2 glycerol-3-phosphate dehydrogenase compare
TX73_019275 -0.7 -3.1 branched-chain amino acid ABC transporter permease compare
TX73_023110 -0.7 -2.5 pyridoxal-dependent decarboxylase compare
TX73_004440 -0.7 -4.7 GTP-binding protein compare
TX73_021840 -0.7 -3.2 nitrite/sulfite reductase compare
TX73_014700 -0.7 -3.6 response regulator compare
TX73_019270 -0.7 -3.4 ABC transporter ATP-binding protein compare
TX73_003275 -0.7 -1.8 ribonuclease P protein component compare
TX73_001535 -0.7 -5.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
TX73_005010 -0.7 -2.2 hydrogenase maturation nickel metallochaperone HypA compare
TX73_021890 -0.7 -4.2 response regulator compare
TX73_008175 -0.7 -5.1 glutamate racemase compare
TX73_018565 -0.7 -1.4 DUF1778 domain-containing protein compare
TX73_007080 -0.6 -2.2 V-containing nitrogenase subunit delta compare
TX73_022290 -0.6 -1.0 hypothetical protein compare
TX73_000945 -0.6 -3.5 tyrosine recombinase XerC compare
TX73_000345 -0.6 -0.6 integration host factor subunit beta compare
TX73_001905 -0.6 -5.2 RluA family pseudouridine synthase compare
TX73_007015 -0.6 -1.7 thiosulfate oxidation carrier complex protein SoxZ compare
TX73_012580 -0.6 -5.1 histidine kinase dimerization/phosphoacceptor domain -containing protein compare
TX73_008015 -0.6 -1.5 ribulose bisphosphate carboxylase small subunit compare
TX73_016155 -0.6 -2.5 type I DNA topoisomerase compare
TX73_011020 -0.6 -1.4 c-type cytochrome compare
TX73_015830 -0.6 -4.8 leucyl aminopeptidase compare
TX73_014285 -0.6 -1.2 DUF2842 domain-containing protein compare
TX73_024040 -0.6 -1.1 4Fe-4S binding protein compare
TX73_007415 -0.6 -1.1 hypothetical protein compare
TX73_020010 -0.6 -4.0 hypothetical protein compare
TX73_012480 -0.6 -1.2 ABC transporter ATP-binding protein compare
TX73_004425 -0.6 -3.7 zinc ABC transporter ATP-binding protein AztA compare
TX73_013800 -0.6 -2.4 succinate dehydrogenase assembly factor 2 compare
TX73_007980 -0.6 -2.3 putative photosynthetic complex assembly protein PuhE compare
TX73_018520 -0.6 -0.5 FAD-dependent oxidoreductase compare
TX73_003130 -0.6 -3.4 phosphoenolpyruvate--protein phosphotransferase compare
TX73_013415 -0.6 -4.4 nitrogen regulation protein NR(II) compare
TX73_015670 -0.6 -2.8 potassium transporter Kup compare
TX73_011500 -0.6 -1.3 putative entry exclusion protein TrbK-alt compare
TX73_000335 -0.6 -1.6 30S ribosomal protein S1 compare
TX73_007795 -0.6 -1.8 hypothetical protein compare
TX73_001420 -0.6 -3.1 P-II family nitrogen regulator compare
TX73_020080 -0.6 -2.5 hypothetical protein compare
TX73_004435 -0.5 -3.1 metal ABC transporter substrate-binding protein compare
TX73_001720 -0.5 -1.8 nucleotide exchange factor GrpE compare
TX73_019320 -0.5 -3.5 GMC family oxidoreductase N-terminal domain-containing protein compare
TX73_009180 -0.5 -1.2 DUF3237 domain-containing protein compare
TX73_002750 -0.5 -4.3 acetyl-CoA C-acetyltransferase compare
TX73_002270 -0.5 -0.8 RNA-binding protein compare
TX73_008340 -0.5 -3.6 DUF1134 domain-containing protein compare
TX73_018880 -0.5 -4.2 maltose alpha-D-glucosyltransferase compare
TX73_013215 -0.5 -1.9 glycosyltransferase family 39 protein compare
TX73_015240 -0.5 -0.8 NADH-quinone oxidoreductase subunit J compare
TX73_019930 -0.5 -2.7 glycine cleavage system protein GcvH compare
TX73_023050 -0.5 -2.2 L,D-transpeptidase compare
TX73_004485 -0.5 -3.8 type III PLP-dependent enzyme compare
TX73_007115 -0.5 -2.4 phosphonate ABC transporter ATP-binding protein compare
TX73_005685 -0.5 -2.0 nuclear transport factor 2 family protein compare
TX73_015715 -0.5 -3.5 CreA family protein compare
TX73_000405 -0.5 -1.2 bifunctional tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE/phosphotransferase compare
TX73_017760 -0.5 -1.5 twin-arginine translocation pathway signal compare
TX73_007800 -0.5 -2.4 carotenoid 1,2-hydratase compare
TX73_008455 -0.5 -1.7 DUF3222 family protein compare
TX73_005960 -0.5 -1.7 exodeoxyribonuclease VII large subunit compare
TX73_021010 -0.5 -1.8 GtrA family protein compare
TX73_001235 -0.5 -1.7 hypothetical protein compare
TX73_006700 -0.5 -2.7 tRNA 2-thiouridine(34) synthase MnmA compare
TX73_010685 -0.5 -1.3 response regulator compare
TX73_004445 -0.5 -3.8 WD40 repeat domain-containing protein compare
TX73_009785 -0.5 -1.8 phage major tail protein, TP901-1 family compare
TX73_017690 -0.5 -2.2 transglutaminase-like cysteine peptidase compare
TX73_006630 -0.5 -2.2 transposase compare
TX73_015935 -0.5 -2.1 50S ribosomal protein L9 compare
TX73_001530 -0.5 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
TX73_006085 -0.5 -3.5 DUF1285 domain-containing protein compare
TX73_014770 -0.5 -3.8 beta-N-acetylhexosaminidase compare
TX73_001980 -0.5 -3.8 glucose-1-phosphate adenylyltransferase compare
TX73_006580 -0.5 -1.6 metalloregulator ArsR/SmtB family transcription factor compare
TX73_014210 -0.5 -1.9 MerR family transcriptional regulator compare
TX73_020990 -0.4 -2.1 SDR family NAD(P)-dependent oxidoreductase compare
TX73_001610 -0.4 -3.0 DUF2628 domain-containing protein compare
TX73_007150 -0.4 -2.1 pyridoxamine 5'-phosphate oxidase family protein compare
TX73_009965 -0.4 -3.1 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase compare
TX73_013065 -0.4 -2.0 hypothetical protein compare
TX73_003605 -0.4 -1.1 hypothetical protein compare
TX73_009715 -0.4 -1.8 hypothetical protein compare
TX73_004215 -0.4 -2.7 acetyl-CoA C-acetyltransferase compare
TX73_002300 -0.4 -1.4 helix-turn-helix domain-containing protein compare
TX73_021375 -0.4 -1.8 DUF6527 family protein compare
TX73_015275 -0.4 -2.8 FkbM family methyltransferase compare
TX73_017785 -0.4 -1.4 hypothetical protein compare
TX73_022840 -0.4 -2.7 carbohydrate ABC transporter permease compare
TX73_012590 -0.4 -3.4 CHASE3 domain-containing protein compare
TX73_024515 -0.4 -1.5 molybdopterin-binding protein compare
TX73_022190 -0.4 -2.4 BLUF domain-containing protein compare
TX73_016515 -0.4 -1.7 Zn-ribbon domain-containing OB-fold protein compare
TX73_012065 -0.4 -2.8 heavy metal translocating P-type ATPase compare
TX73_000035 -0.4 -3.8 HWE histidine kinase domain-containing protein compare
TX73_006520 -0.4 -1.4 DUF1488 domain-containing protein compare
TX73_013975 -0.4 -0.9 ribonuclease III compare
TX73_014140 -0.4 -1.2 transcription antitermination factor NusB compare
TX73_006990 -0.4 -1.8 hypothetical protein compare
TX73_002155 -0.4 -2.2 YggT family protein compare
TX73_009015 -0.4 -2.2 hydroxypyruvate isomerase family protein compare
TX73_017910 -0.4 -2.0 hypothetical protein compare
TX73_008615 -0.4 -2.0 hybrid sensor histidine kinase/response regulator compare
TX73_019935 -0.4 -3.5 aminomethyl-transferring glycine dehydrogenase compare
TX73_002310 -0.4 -3.2 hemolysin family protein compare
TX73_005710 -0.4 -2.0 DUF2934 domain-containing protein compare
TX73_000655 -0.4 -1.9 carbohydrate ABC transporter permease compare
TX73_019925 -0.4 -3.3 glycine cleavage system aminomethyltransferase GcvT compare
TX73_018695 -0.4 -1.7 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
TX73_011515 -0.4 -2.1 VirB3 family type IV secretion system protein compare
TX73_002370 -0.4 -2.8 adenosine kinase compare
TX73_021850 -0.4 -2.6 siroheme synthase CysG compare
TX73_022925 -0.4 -1.6 DUF3775 domain-containing protein compare
TX73_022445 -0.4 -3.0 glutathione S-transferase family protein compare
TX73_022005 -0.4 -2.3 PAS domain S-box protein compare
TX73_019335 -0.4 -3.5 MMPL family transporter compare
TX73_000890 -0.4 -2.4 RNA pyrophosphohydrolase compare
TX73_001485 -0.4 -2.6 YggS family pyridoxal phosphate-dependent enzyme compare
TX73_001570 -0.4 -0.8 protein-export chaperone SecB compare
TX73_004560 -0.4 -2.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Rhodopseudomonas palustris CGA009 in carbon source experiments

For carbon source Butyric Acid across organisms